FvH4_6g43990

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000349
Physical Location & Seq
Forward (+)
33953255 .. 33955164
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43990.t1

Sequence Viewer

Length: 792 bp
ATGTCCGCCATGAATCTTCGCTCGTTGAGATCCATCTATCTTACAGGGGTTTATTTGACGGATGAGAGGGTCCATGATTTGATTCTGGGGTGTCCCAATCTGGAGGACCTCAAGCTTAAATATTGTTATGGGATGAAAAAGTTGAGTATATGTAGCACCAGGCTTAAGAAGCTAGTCGTGTGGGGTGAGATTTATATTAGATCATGTGAGGTTGATTGCCCAAACCTTAGTTCGATACGTATCGATAGCTTTAGCCGATTTGTATTCAAGAATGCCTCTTCCCTGGTTCACTTTTGTTTCGGCAAGAATTTCCTATTATACAAGCACTACTATGATTTGTGGCGTACAACAGTAGTGGGGATACTCAAGCAAGCGCCTCAGCTTAGGAATCTAACTGTTCCCAATCTGTGGTTTAAGCCTCTGTCATCAAAGGATCCTTATTACCTCAAAAGTTTTATGCTCCACAATCTCAACCATCTAGAGCTATACACAGACTATTCTCAAACTTTTCTCGTTGGCATGGCTGCACTGCTTGAACTTTGCCCTAATCTTGAGACGATGGTTCTTAACGACATCGAAATTAAGGATTTACCGGAAGAGTTCCCAAATGAATCAATTCAGTTCAAAATTCCAAGGCTCAAGCAAGTTACAATGAAATTATATGATGAATCAAAAAATCAACGCAATTTGCTGACTATCTTAAAAATGCAAGGAGTGGTCTTGGAAAAGATTGTGCTTGTGTCTAGCAGGCGTGGTGAAAAGAACATCGTAATTTCTTCTGTTAGAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

264

Amino Acids

30.64

Weight (kDa)

9.2

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 3 - 79 1.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 5 - 190 9e-13 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 408
AciI CCGC 1 cut(s) 6
AclWI GGATC 3 cut(s) 24, 428, 441
AcsI RAATTY 2 cut(s) 307, 627
AfaI GTAC 1 cut(s) 346
AfiI CCNNNNNNNGG 1 cut(s) 408
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 268, 536, 625
AjnI CCWGG 2 cut(s) 158, 282
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 5 cut(s) 115, 172, 249, 382, 484
AluI AGCT 5 cut(s) 115, 172, 249, 382, 484
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 3 cut(s) 24, 428, 441
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 2 cut(s) 307, 627
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 70, 106
AsuHPI GGTGA 2 cut(s) 197, 767
AvaII GGWCC 2 cut(s) 70, 106
BamHI GGATCC 1 cut(s) 433
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 511
BccI CCATC 3 cut(s) 41, 483, 553
BciT130I CCWGG 2 cut(s) 160, 284
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 3 cut(s) 173, 479, 744
BfoI RGCGCY 1 cut(s) 377
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 1 cut(s) 525
BlsI GCNGC 1 cut(s) 526
Bme1390I CCNGG 2 cut(s) 160, 284
Bme18I GGWCC 2 cut(s) 70, 106
BmgT120I GGNCC 2 cut(s) 70, 106
BmiI GGNNCC 2 cut(s) 71, 435
BmrFI CCNGG 2 cut(s) 160, 284
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 2 cut(s) 378, 383
BpuEI CTTGAG 4 cut(s) 95, 350, 572, 623
Bsa29I ATCGAT 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 282, 632
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 239
BseBI CCWGG 2 cut(s) 160, 284
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 282, 632
BseGI GGATG 2 cut(s) 67, 138
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 511
BsgI GTGCAG 1 cut(s) 510
BshVI ATCGAT 1 cut(s) 243
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 1 cut(s) 548
BsmBI CGTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 29, 200, 433
BspACI CCGC 1 cut(s) 6
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 71, 435
BspPI GGATC 3 cut(s) 24, 428, 441
BspTI CTTAAG 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 282, 632
BssMI GATC 3 cut(s) 29, 200, 433
BssT1I CCWWGG 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 160, 284
Bst4CI ACNGT 2 cut(s) 352, 397
Bst6I CTCTTC 2 cut(s) 283, 591
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 372, 749
BstDEI CTNAG 4 cut(s) 227, 378, 383, 789
BstF5I GGATG 2 cut(s) 67, 138
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 3 cut(s) 32, 203, 436
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 3 cut(s) 29, 200, 433
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 2 cut(s) 160, 284
BstSCI CCNGG 2 cut(s) 158, 282
BstSNI TACGTA 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 2 cut(s) 29, 433
BstYI RGATCY 2 cut(s) 29, 433
Bsu15I ATCGAT 1 cut(s) 243
BsuI GTATCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 243
BtsCI GGATG 2 cut(s) 67, 138
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 1 cut(s) 527
Cac8I GCNNGC 2 cut(s) 372, 749
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 70, 106
ClaI ATCGAT 1 cut(s) 243
Csp6I GTAC 1 cut(s) 345
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 4 cut(s) 10, 74, 204, 520
CviQI GTAC 1 cut(s) 345
DdeI CTNAG 4 cut(s) 227, 378, 383, 789
DpnI GATC 3 cut(s) 31, 202, 435
DpnII GATC 3 cut(s) 29, 200, 433
Eam1104I CTCTTC 2 cut(s) 283, 591
EarI CTCTTC 2 cut(s) 283, 591
Eco105I TACGTA 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 632
Eco47I GGWCC 2 cut(s) 70, 106
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 158, 282
EcoT14I CCWWGG 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 632
Esp3I CGTCTC 1 cut(s) 548
FaeI CATG 4 cut(s) 13, 77, 207, 523
FaqI GGGAC 1 cut(s) 78
FatI CATG 4 cut(s) 9, 73, 203, 519
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 2 cut(s) 74, 145
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 3 cut(s) 173, 479, 744
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 377
HapII CCGG 1 cut(s) 593
HhaI GCGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 13, 77, 207, 523
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 5 cut(s) 13, 82, 388, 611, 668
HpaII CCGG 1 cut(s) 593
HphI GGTGA 2 cut(s) 197, 767
Hpy166II GTNNAC 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 101, 268, 479, 551
Hpy8I GTNNAC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 352, 397
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 527, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 4 cut(s) 227, 378, 383, 789
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 4 cut(s) 13, 77, 207, 523
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 3 cut(s) 29, 200, 433
LmnI GCTCC 1 cut(s) 465
LpnPI CCDG 9 cut(s) 30, 71, 86, 145, 172, 269, 296, 606, 733
Lsp1109I GCAGC 1 cut(s) 511
MaeI CTAG 3 cut(s) 173, 479, 744
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 646
MalI GATC 3 cut(s) 31, 202, 435
MboI GATC 3 cut(s) 29, 200, 433
MboII GAAGA 4 cut(s) 8, 270, 608, 768
MflI RGATCY 2 cut(s) 29, 433
MluCI AATT 7 cut(s) 307, 579, 615, 627, 656, 685, 771
MnlI CCTC 8 cut(s) 60, 97, 119, 202, 286, 387, 429, 455
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 6 cut(s) 117, 165, 414, 567, 582, 701
MslI CAYNNNNRTG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 2 cut(s) 160, 284
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 2 cut(s) 160, 284
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeII GATC 3 cut(s) 29, 200, 433
NlaIII CATG 4 cut(s) 13, 77, 207, 523
NlaIV GGNNCC 2 cut(s) 71, 435
PctI GAATGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 13, 82, 388, 611, 668
PflMI CCANNNNNTGG 1 cut(s) 408
PkrI GCNGC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 158, 282
PspGI CCWGG 2 cut(s) 158, 282
PspN4I GGNNCC 2 cut(s) 71, 435
PspPI GGNCC 2 cut(s) 70, 106
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 2 cut(s) 29, 433
RsaI GTAC 1 cut(s) 346
RsaNI GTAC 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 6 cut(s) 117, 165, 414, 567, 582, 701
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 29, 200, 433
Sau96I GGNCC 2 cut(s) 70, 106
ScrFI CCNGG 2 cut(s) 160, 284
SinI GGWCC 2 cut(s) 70, 106
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 5 cut(s) 110, 164, 365, 551, 638
SmoI CTYRAG 5 cut(s) 110, 164, 365, 551, 638
SnaBI TACGTA 1 cut(s) 239
Sse9I AATT 7 cut(s) 307, 579, 615, 627, 656, 685, 771
SsiI CCGC 1 cut(s) 6
SspI AATATT 1 cut(s) 122
SspMI CTAG 3 cut(s) 173, 479, 744
StyD4I CCNGG 2 cut(s) 158, 282
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 2 cut(s) 352, 397
TaiI ACGT 1 cut(s) 241
TaqI TCGA 3 cut(s) 233, 243, 576
TasI AATT 7 cut(s) 307, 579, 615, 627, 656, 685, 771
TfiI GAWTC 5 cut(s) 13, 82, 388, 611, 668
Tru1I TTAA 6 cut(s) 117, 165, 414, 567, 582, 701
Tru9I TTAA 6 cut(s) 117, 165, 414, 567, 582, 701
TscAI CASTG 1 cut(s) 534
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 5 cut(s) 26, 149, 624, 668, 681
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 408
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 70, 106
XapI RAATTY 2 cut(s) 307, 627
XbaI TCTAGA 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 3 cut(s) 173, 479, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.