LRR-repeat protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| F-box | PF00646 | 56 - 97 | 2.4e-09 | F-box domain |
| F-box-like | PF12937 | 56 - 87 | 1e-06 | F-box-like |
| LRR_At1g61320_AtMIF1 | PF23622 | 125 - 349 | 1.2e-20 | At1g61320/AtMIF1, LRR domain |
| LRR_At5g56370 | PF24758 | 182 - 295 | 2.5e-09 | FBD-associated F-box protein At5g56370, LRR repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 455 |
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AccI | GTMKAC | 3 cut(s) | 360, 447, 618 |
| AccII | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| AcoI | YGGCCR | 1 cut(s) | 642 |
| AcsI | RAATTY | 2 cut(s) | 290, 871 |
| AcuI | CTGAAG | 2 cut(s) | 740, 824 |
| AcyI | GRCGYC | 2 cut(s) | 225, 588 |
| AfaI | GTAC | 3 cut(s) | 524, 557, 733 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 16, 17, 255, 571, 651 |
| AgsI | TTSAA | 2 cut(s) | 547, 604 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 325, 403 |
| AjiI | CACGTC | 1 cut(s) | 445 |
| AjnI | CCWGG | 3 cut(s) | 104, 452, 936 |
| AleI | CACNNNNGTG | 1 cut(s) | 486 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 30, 62 |
| AluBI | AGCT | 9 cut(s) | 207, 493, 607, 669, 754, 802, 811, 888, 1039 |
| AluI | AGCT | 9 cut(s) | 207, 493, 607, 669, 754, 802, 811, 888, 1039 |
| Alw21I | GWGCWC | 4 cut(s) | 306, 495, 671, 921 |
| Alw26I | GTCTC | 3 cut(s) | 411, 533, 664 |
| Ama87I | CYCGRG | 2 cut(s) | 10, 740 |
| AoxI | GGCC | 5 cut(s) | 19, 26, 380, 642, 933 |
| ApaI | GGGCCC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 2 cut(s) | 462, 1036 |
| ApoI | RAATTY | 2 cut(s) | 290, 871 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 71 |
| AspLEI | GCGC | 8 cut(s) | 368, 467, 487, 590, 615, 931, 1024, 1087 |
| AspS9I | GGNCC | 9 cut(s) | 19, 26, 27, 270, 381, 457, 574, 700, 934 |
| AsuC2I | CCSGG | 2 cut(s) | 518, 596 |
| AsuHPI | GGTGA | 1 cut(s) | 616 |
| AvaI | CYCGRG | 2 cut(s) | 10, 740 |
| AvaII | GGWCC | 4 cut(s) | 270, 457, 574, 700 |
| BaeGI | GKGCMC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 4 cut(s) | 30, 495, 657, 671 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 59, 91 |
| Bbv12I | GWGCWC | 4 cut(s) | 306, 495, 671, 921 |
| BbvI | GCAGC | 2 cut(s) | 449, 1048 |
| BccI | CCATC | 3 cut(s) | 401, 700, 766 |
| BceAI | ACGGC | 4 cut(s) | 212, 310, 452, 575 |
| BciT130I | CCWGG | 3 cut(s) | 106, 454, 938 |
| BcnI | CCSGG | 2 cut(s) | 518, 596 |
| BcoDI | GTCTC | 3 cut(s) | 411, 533, 664 |
| BfmI | CTRYAG | 1 cut(s) | 898 |
| BfoI | RGCGCY | 2 cut(s) | 591, 1025 |
| BisI | GCNGC | 3 cut(s) | 463, 645, 1037 |
| BlsI | GCNGC | 3 cut(s) | 464, 646, 1038 |
| Bme1390I | CCNGG | 5 cut(s) | 106, 454, 518, 596, 938 |
| Bme18I | GGWCC | 4 cut(s) | 270, 457, 574, 700 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 325, 403 |
| BmeT110I | CYCGRG | 2 cut(s) | 10, 740 |
| BmgBI | CACGTC | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 9 cut(s) | 19, 26, 27, 270, 381, 457, 574, 700, 934 |
| BmiI | GGNNCC | 6 cut(s) | 28, 152, 272, 383, 458, 589 |
| BmrFI | CCNGG | 5 cut(s) | 106, 454, 518, 596, 938 |
| Bpu10I | CCTNAGC | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 2 cut(s) | 905, 1034 |
| BpuMI | CCSGG | 2 cut(s) | 518, 596 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 588 |
| BsaI | GGTCTC | 1 cut(s) | 533 |
| BsaJI | CCNNGG | 4 cut(s) | 22, 453, 648, 936 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 30, 60, 434, 464 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 16, 17, 255, 571, 651 |
| Bse118I | RCCGGY | 2 cut(s) | 631, 931 |
| Bse1I | ACTGG | 1 cut(s) | 1058 |
| BseBI | CCWGG | 3 cut(s) | 106, 454, 938 |
| BseDI | CCNNGG | 4 cut(s) | 22, 453, 648, 936 |
| BseGI | GGATG | 3 cut(s) | 198, 688, 777 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 16, 17, 255, 571, 651 |
| BseMII | CTCAG | 3 cut(s) | 109, 194, 656 |
| BseNI | ACTGG | 1 cut(s) | 1058 |
| BseRI | GAGGAG | 2 cut(s) | 182, 467 |
| BseSI | GKGCMC | 1 cut(s) | 30 |
| BseXI | GCAGC | 2 cut(s) | 449, 1048 |
| Bsh1236I | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| Bsh1285I | CGRYCG | 3 cut(s) | 364, 430, 517 |
| BshFI | GGCC | 5 cut(s) | 21, 28, 382, 644, 935 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BsiEI | CGRYCG | 3 cut(s) | 364, 430, 517 |
| BsiHKAI | GWGCWC | 4 cut(s) | 306, 495, 671, 921 |
| BsiHKCI | CYCGRG | 2 cut(s) | 10, 740 |
| BsiSI | CCGG | 5 cut(s) | 379, 517, 595, 632, 932 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 16, 17, 255, 571, 651 |
| BsmAI | GTCTC | 3 cut(s) | 411, 533, 664 |
| BsmBI | CGTCTC | 1 cut(s) | 664 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsnI | GGCC | 5 cut(s) | 21, 28, 382, 644, 935 |
| Bso31I | GGTCTC | 1 cut(s) | 533 |
| BsoBI | CYCGRG | 2 cut(s) | 10, 740 |
| Bsp120I | GGGCCC | 1 cut(s) | 26 |
| Bsp1286I | GDGCHC | 6 cut(s) | 30, 306, 495, 657, 671, 921 |
| Bsp19I | CCATGG | 1 cut(s) | 648 |
| BspANI | GGCC | 5 cut(s) | 21, 28, 382, 644, 935 |
| BspCNI | CTCAG | 3 cut(s) | 108, 195, 657 |
| BspFNI | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| BspLI | GGNNCC | 6 cut(s) | 28, 152, 272, 383, 458, 589 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BspTNI | GGTCTC | 1 cut(s) | 533 |
| BsrFI | RCCGGY | 2 cut(s) | 631, 931 |
| BsrI | ACTGG | 1 cut(s) | 1058 |
| BssAI | RCCGGY | 2 cut(s) | 631, 931 |
| BssECI | CCNNGG | 4 cut(s) | 22, 453, 648, 936 |
| BssNI | GRCGYC | 2 cut(s) | 225, 588 |
| BssT1I | CCWWGG | 2 cut(s) | 22, 648 |
| Bst2UI | CCWGG | 3 cut(s) | 106, 454, 938 |
| Bst4CI | ACNGT | 3 cut(s) | 764, 899, 912 |
| BstACI | GRCGYC | 2 cut(s) | 225, 588 |
| BstC8I | GCNNGC | 6 cut(s) | 633, 637, 813, 933, 1020, 1083 |
| BstDEI | CTNAG | 4 cut(s) | 95, 203, 578, 665 |
| BstDSI | CCRYGG | 1 cut(s) | 648 |
| BstF5I | GGATG | 3 cut(s) | 198, 688, 777 |
| BstFNI | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| BstH2I | RGCGCY | 2 cut(s) | 591, 1025 |
| BstHHI | GCGC | 8 cut(s) | 368, 467, 487, 590, 615, 931, 1024, 1087 |
| BstMAI | GTCTC | 3 cut(s) | 411, 533, 664 |
| BstMCI | CGRYCG | 3 cut(s) | 364, 430, 517 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 641, 808, 1015, 1045 |
| BstNI | CCWGG | 3 cut(s) | 106, 454, 938 |
| BstSCI | CCNGG | 5 cut(s) | 104, 452, 516, 594, 936 |
| BstSFI | CTRYAG | 1 cut(s) | 898 |
| BstSLI | GKGCMC | 1 cut(s) | 30 |
| BstUI | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| BstV1I | GCAGC | 2 cut(s) | 449, 1048 |
| BsuRI | GGCC | 5 cut(s) | 21, 28, 382, 644, 935 |
| BtgI | CCRYGG | 1 cut(s) | 648 |
| BtrI | CACGTC | 1 cut(s) | 445 |
| BtsCI | GGATG | 3 cut(s) | 198, 688, 777 |
| Cac8I | GCNNGC | 6 cut(s) | 633, 637, 813, 933, 1020, 1083 |
| CfoI | GCGC | 8 cut(s) | 368, 467, 487, 590, 615, 931, 1024, 1087 |
| Cfr10I | RCCGGY | 2 cut(s) | 631, 931 |
| Cfr13I | GGNCC | 9 cut(s) | 19, 26, 27, 270, 381, 457, 574, 700, 934 |
| CseI | GACGC | 2 cut(s) | 233, 604 |
| Csp6I | GTAC | 3 cut(s) | 523, 556, 732 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1037, 1072 |
| CviAII | CATG | 2 cut(s) | 640, 649 |
| CviQI | GTAC | 3 cut(s) | 523, 556, 732 |
| DdeI | CTNAG | 4 cut(s) | 95, 203, 578, 665 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 455 |
| DriI | GACNNNNNGTC | 2 cut(s) | 325, 403 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 455 |
| EaeI | YGGCCR | 1 cut(s) | 642 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 325, 403 |
| EciI | GGCGGA | 1 cut(s) | 38 |
| Ecl136II | GAGCTC | 2 cut(s) | 493, 669 |
| Eco130I | CCWWGG | 2 cut(s) | 22, 648 |
| Eco24I | GRGCYC | 4 cut(s) | 30, 495, 657, 671 |
| Eco31I | GGTCTC | 1 cut(s) | 533 |
| Eco32I | GATATC | 1 cut(s) | 723 |
| Eco47I | GGWCC | 4 cut(s) | 270, 457, 574, 700 |
| Eco53kI | GAGCTC | 2 cut(s) | 493, 669 |
| Eco57I | CTGAAG | 2 cut(s) | 740, 824 |
| Eco88I | CYCGRG | 2 cut(s) | 10, 740 |
| EcoICRI | GAGCTC | 2 cut(s) | 493, 669 |
| EcoRII | CCWGG | 3 cut(s) | 104, 452, 936 |
| EcoRV | GATATC | 1 cut(s) | 723 |
| EcoT14I | CCWWGG | 2 cut(s) | 22, 648 |
| EcoT38I | GRGCYC | 4 cut(s) | 30, 495, 657, 671 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| ErhI | CCWWGG | 2 cut(s) | 22, 648 |
| Esp3I | CGTCTC | 1 cut(s) | 664 |
| FaeI | CATG | 2 cut(s) | 643, 652 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 2 cut(s) | 639, 648 |
| FauI | CCCGC | 3 cut(s) | 257, 281, 330 |
| FblI | GTMKAC | 3 cut(s) | 360, 447, 618 |
| Fnu4HI | GCNGC | 3 cut(s) | 463, 645, 1037 |
| FokI | GGATG | 3 cut(s) | 185, 695, 784 |
| FriOI | GRGCYC | 4 cut(s) | 30, 495, 657, 671 |
| Fsp4HI | GCNGC | 3 cut(s) | 463, 645, 1037 |
| GlaI | GCGC | 8 cut(s) | 367, 466, 486, 589, 614, 930, 1023, 1086 |
| GluI | GCNGC | 3 cut(s) | 463, 645, 1037 |
| HaeII | RGCGCY | 2 cut(s) | 591, 1025 |
| HaeIII | GGCC | 5 cut(s) | 21, 28, 382, 644, 935 |
| HapII | CCGG | 5 cut(s) | 379, 517, 595, 632, 932 |
| HgaI | GACGC | 2 cut(s) | 233, 604 |
| HhaI | GCGC | 8 cut(s) | 368, 467, 487, 590, 615, 931, 1024, 1087 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 588 |
| Hin1II | CATG | 2 cut(s) | 643, 652 |
| Hin6I | GCGC | 8 cut(s) | 366, 465, 485, 588, 613, 929, 1022, 1085 |
| HinP1I | GCGC | 8 cut(s) | 366, 465, 485, 588, 613, 929, 1022, 1085 |
| HincII | GTYRAC | 3 cut(s) | 361, 448, 619 |
| HindII | GTYRAC | 3 cut(s) | 361, 448, 619 |
| HindIII | AAGCTT | 1 cut(s) | 886 |
| HinfI | GANTC | 4 cut(s) | 13, 449, 736, 833 |
| HpaII | CCGG | 5 cut(s) | 379, 517, 595, 632, 932 |
| HphI | GGTGA | 1 cut(s) | 616 |
| Hpy166II | GTNNAC | 3 cut(s) | 361, 448, 619 |
| Hpy188I | TCNGA | 6 cut(s) | 98, 150, 331, 666, 759, 838 |
| Hpy188III | TCNNGA | 5 cut(s) | 202, 214, 232, 680, 740 |
| Hpy8I | GTNNAC | 3 cut(s) | 361, 448, 619 |
| Hpy99I | CGWCG | 8 cut(s) | 136, 139, 185, 227, 362, 449, 539, 620 |
| HpyAV | CCTTC | 2 cut(s) | 424, 553 |
| HpyCH4III | ACNGT | 3 cut(s) | 764, 899, 912 |
| HpyCH4IV | ACGT | 1 cut(s) | 444 |
| HpyCH4V | TGCA | 2 cut(s) | 64, 1048 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 641, 808, 1015, 1045 |
| HpyF3I | CTNAG | 4 cut(s) | 95, 203, 578, 665 |
| HpySE526I | ACGT | 1 cut(s) | 444 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 588 |
| Hsp92II | CATG | 2 cut(s) | 643, 652 |
| HspAI | GCGC | 8 cut(s) | 366, 465, 485, 588, 613, 929, 1022, 1085 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| KroI | GCCGGC | 2 cut(s) | 631, 931 |
| KroNI | GCCGGC | 2 cut(s) | 633, 933 |
| LmnI | GCTCC | 5 cut(s) | 480, 498, 751, 973, 993 |
| Lsp1109I | GCAGC | 2 cut(s) | 449, 1048 |
| MaeII | ACGT | 1 cut(s) | 444 |
| MaeIII | GTNAC | 2 cut(s) | 469, 1066 |
| MboII | GAAGA | 6 cut(s) | 202, 337, 499, 790, 796, 817 |
| MhlI | GDGCHC | 6 cut(s) | 30, 306, 495, 657, 671, 921 |
| MluCI | AATT | 5 cut(s) | 71, 290, 746, 871, 1042 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 2 cut(s) | 22, 443 |
| MroNI | GCCGGC | 2 cut(s) | 631, 931 |
| MroXI | GAANNNNTTC | 1 cut(s) | 71 |
| MseI | TTAA | 2 cut(s) | 1041, 1062 |
| MslI | CAYNNNNRTG | 1 cut(s) | 486 |
| MspA1I | CMGCKG | 1 cut(s) | 462 |
| MspI | CCGG | 5 cut(s) | 379, 517, 595, 632, 932 |
| MspR9I | CCNGG | 5 cut(s) | 106, 454, 518, 596, 938 |
| MvaI | CCWGG | 3 cut(s) | 106, 454, 938 |
| MvnI | CGCG | 7 cut(s) | 339, 366, 485, 487, 572, 613, 615 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 641, 808, 1015, 1045 |
| NaeI | GCCGGC | 2 cut(s) | 633, 933 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NciI | CCSGG | 2 cut(s) | 518, 596 |
| NcoI | CCATGG | 1 cut(s) | 648 |
| NgoMIV | GCCGGC | 2 cut(s) | 631, 931 |
| NlaIII | CATG | 2 cut(s) | 643, 652 |
| NlaIV | GGNNCC | 6 cut(s) | 28, 152, 272, 383, 458, 589 |
| NmeAIII | GCCGAG | 1 cut(s) | 376 |
| NmuCI | GTSAC | 1 cut(s) | 469 |
| OliI | CACNNNNGTG | 1 cut(s) | 486 |
| PaeR7I | CTCGAG | 1 cut(s) | 740 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 177, 354, 441, 731 |
| PdiI | GCCGGC | 2 cut(s) | 633, 933 |
| PdmI | GAANNNNTTC | 1 cut(s) | 71 |
| PfeI | GAWTC | 2 cut(s) | 736, 833 |
| PflFI | GACNNNGTC | 1 cut(s) | 227 |
| PfoI | TCCNGGA | 1 cut(s) | 104 |
| PkrI | GCNGC | 3 cut(s) | 464, 646, 1038 |
| PleI | GAGTC | 2 cut(s) | 21, 443 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PpsI | GAGTC | 2 cut(s) | 21, 443 |
| Psp124BI | GAGCTC | 2 cut(s) | 495, 671 |
| Psp6I | CCWGG | 3 cut(s) | 104, 452, 936 |
| PspGI | CCWGG | 3 cut(s) | 104, 452, 936 |
| PspN4I | GGNNCC | 6 cut(s) | 28, 152, 272, 383, 458, 589 |
| PspOMI | GGGCCC | 1 cut(s) | 26 |
| PspPI | GGNCC | 9 cut(s) | 19, 26, 27, 270, 381, 457, 574, 700, 934 |
| PsyI | GACNNNGTC | 1 cut(s) | 227 |
| RsaI | GTAC | 3 cut(s) | 524, 557, 733 |
| RsaNI | GTAC | 3 cut(s) | 523, 556, 732 |
| RseI | CAYNNNNRTG | 1 cut(s) | 486 |
| SacI | GAGCTC | 2 cut(s) | 495, 671 |
| SalI | GTCGAC | 3 cut(s) | 359, 446, 617 |
| SaqAI | TTAA | 2 cut(s) | 1041, 1062 |
| SatI | GCNGC | 3 cut(s) | 463, 645, 1037 |
| Sau96I | GGNCC | 9 cut(s) | 19, 26, 27, 270, 381, 457, 574, 700, 934 |
| SchI | GAGTC | 2 cut(s) | 22, 443 |
| ScrFI | CCNGG | 5 cut(s) | 106, 454, 518, 596, 938 |
| SduI | GDGCHC | 6 cut(s) | 30, 306, 495, 657, 671, 921 |
| SfcI | CTRYAG | 1 cut(s) | 898 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| Sfr274I | CTCGAG | 1 cut(s) | 740 |
| SinI | GGWCC | 4 cut(s) | 270, 457, 574, 700 |
| SlaI | CTCGAG | 1 cut(s) | 740 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 486 |
| SmlI | CTYRAG | 3 cut(s) | 740, 920, 1013 |
| SmoI | CTYRAG | 3 cut(s) | 740, 920, 1013 |
| Sse9I | AATT | 5 cut(s) | 71, 290, 746, 871, 1042 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SstI | GAGCTC | 2 cut(s) | 495, 671 |
| StyD4I | CCNGG | 5 cut(s) | 104, 452, 516, 594, 936 |
| StyI | CCWWGG | 2 cut(s) | 22, 648 |
| TaaI | ACNGT | 3 cut(s) | 764, 899, 912 |
| TaiI | ACGT | 1 cut(s) | 447 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TasI | AATT | 5 cut(s) | 71, 290, 746, 871, 1042 |
| TauI | GCSGC | 1 cut(s) | 647 |
| TfiI | GAWTC | 2 cut(s) | 736, 833 |
| Tru1I | TTAA | 2 cut(s) | 1041, 1062 |
| Tru9I | TTAA | 2 cut(s) | 1041, 1062 |
| TseFI | GTSAC | 1 cut(s) | 469 |
| TseI | GCWGC | 2 cut(s) | 462, 1036 |
| Tsp45I | GTSAC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 3 cut(s) | 406, 499, 797 |
| TspGWI | ACGGA | 1 cut(s) | 713 |
| Tth111I | GACNNNGTC | 1 cut(s) | 227 |
| VpaK11BI | GGWCC | 4 cut(s) | 270, 457, 574, 700 |
| XapI | RAATTY | 2 cut(s) | 290, 871 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 121 |
| XhoI | CTCGAG | 1 cut(s) | 740 |
| XmiI | GTMKAC | 3 cut(s) | 360, 447, 618 |
| XmnI | GAANNNNTTC | 1 cut(s) | 71 |