Rmu_co8474907.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474907.1
OG0000349
Physical Location & Seq
Forward (+)
1795 .. 2092
298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474907.1_g000002.1.cds

Sequence Viewer

Length: 298 bp
atgctcccagaaattatggaacaagccagtactgaaattcaagccccaaatccaaaccctagtcgaaccctaaacgatctccccgacgaaatcctgatccaaatcctctccttgattccgaccttagaggccatccacaactctctcgtctcccgccaatggcgatccctctggtcccgtctccccttcctcgacttctcctaccaccgcttcccggtcaacgacgccgaacctctccccgtcacgagccaccgcttcgccgagttcgtcgaccgcgctctcatcctccgccccaatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

99

Amino Acids

11.46

Weight (kDa)

5.19

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 276
AciI CCGC 5 cut(s) 154, 208, 253, 274, 289
AclWI GGATC 2 cut(s) 91, 159
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 159, 214
AgsI TTSAA 1 cut(s) 41
Alw26I GTCTC 2 cut(s) 154, 185
AlwI GGATC 2 cut(s) 91, 159
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 36
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 174
BauI CACGAG 1 cut(s) 244
BccI CCATC 1 cut(s) 140
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 154, 185
BfaI CTAG 1 cut(s) 60
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 214
Bse1I ACTGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 101
BseGI GGATG 2 cut(s) 132, 282
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 2 cut(s) 159, 214
BseNI ACTGG 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 159, 214
BsmAI GTCTC 2 cut(s) 154, 185
BsmBI CGTCTC 2 cut(s) 154, 185
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 76, 96, 164
BspACI CCGC 5 cut(s) 154, 208, 253, 274, 289
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 176
BspPI GGATC 2 cut(s) 91, 159
BsrI ACTGG 1 cut(s) 27
BssMI GATC 3 cut(s) 76, 96, 164
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 244
Bst2BI CACGAG 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 124
BstF5I GGATG 2 cut(s) 132, 282
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 3 cut(s) 79, 99, 167
BstMAI GTCTC 2 cut(s) 154, 185
BstMBI GATC 3 cut(s) 76, 96, 164
BstMCI CGRYCG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 1 cut(s) 276
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 132, 282
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 174
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 30
CviJI RGCY 4 cut(s) 26, 44, 131, 249
CviKI_1 RGCY 4 cut(s) 26, 44, 131, 249
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 1 cut(s) 124
DpnI GATC 3 cut(s) 78, 98, 166
DpnII GATC 3 cut(s) 76, 96, 164
EciI GGCGGA 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 174
Esp3I CGTCTC 2 cut(s) 154, 185
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 160
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 270
FokI GGATG 2 cut(s) 119, 269
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HincII GTYRAC 2 cut(s) 220, 271
HindII GTYRAC 2 cut(s) 220, 271
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 220, 271
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 94, 244
Hpy8I GTNNAC 2 cut(s) 220, 271
Hpy99I CGWCG 3 cut(s) 89, 227, 272
HpyAV CCTTC 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 1 cut(s) 276
Kzo9I GATC 3 cut(s) 76, 96, 164
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 21, 40, 107, 157, 228
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 78, 98, 166
MboI GATC 3 cut(s) 76, 96, 164
MluCI AATT 2 cut(s) 12, 36
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 6 cut(s) 116, 121, 179, 200, 243, 296
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 276
NciI CCSGG 1 cut(s) 215
NdeII GATC 3 cut(s) 76, 96, 164
NlaIV GGNNCC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 264
PfeI GAWTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SalI GTCGAC 1 cut(s) 269
Sau3AI GATC 3 cut(s) 76, 96, 164
Sau96I GGNCC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 215
SetI ASST 2 cut(s) 125, 235
SinI GGWCC 1 cut(s) 174
Sse9I AATT 2 cut(s) 12, 36
SsiI CCGC 5 cut(s) 154, 208, 253, 274, 289
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 213
TaqI TCGA 3 cut(s) 64, 192, 270
TasI AATT 2 cut(s) 12, 36
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 1 cut(s) 115
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 270
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.