Rmu_sc0024525.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024525.1
OG0000349
Physical Location & Seq
Reverse (-)
1922 .. 2449
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024525.1_g000002.1.cds

Sequence Viewer

Length: 528 bp
ctgatccaaatcctctccttgattccgaccttagaggccatccacaactccctcgtctgccgccaatggcgatccctctggtctcgtctccccttcctcgacttctcctaccacctcttcctggtcaacgatgccttacccctccccgtcacgagccacggcttcgccgagttcgttaatcgcgctctcattctccgccccaattcttcgattaaaaccttatgcctctctttcatcttctaccagtactacacctcccacgtcgactcttgggtgcgctccgccatcaagcgcttccgggtgcgtgagactgacctcgacttcttcatcgacaaagagtaccatctctggagcgaggaagatcgagccccgtgtggaggcagatttctcagacttttgctcactgatttcgctaatttcgaggtccgagtcaccgagcttccggtactacaacactgtcttctggtcctgcttggcaatgatggtagttggtctgagagagctcctccgcctccggaggcttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

175

Amino Acids

20.38

Weight (kDa)

6.32

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 4 cut(s) 61, 196, 282, 509
AclWI GGATC 1 cut(s) 66
AfaI GTAC 3 cut(s) 248, 341, 447
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 121, 377
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 2 cut(s) 439, 503
AluI AGCT 2 cut(s) 439, 503
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 3 cut(s) 87, 92, 302
AlwI GGATC 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 514
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 1 cut(s) 36
AspLEI GCGC 3 cut(s) 185, 279, 294
AspS9I GGNCC 2 cut(s) 424, 466
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 424
AvaII GGWCC 2 cut(s) 424, 466
BanII GRGCYC 2 cut(s) 370, 505
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 505
BccI CCATC 4 cut(s) 47, 293, 351, 476
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 122
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 87, 92, 302
BfoI RGCGCY 1 cut(s) 295
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 122, 299
Bme18I GGWCC 2 cut(s) 424, 466
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 424, 466
BmrFI CCNGG 2 cut(s) 122, 299
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 2 cut(s) 442, 514
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 377
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 121, 377
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 403, 486
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 3 cut(s) 298, 443, 515
BslI CCNNNNNNNGG 2 cut(s) 121, 377
BsmAI GTCTC 3 cut(s) 87, 92, 302
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 370, 505
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 3 cut(s) 3, 71, 361
BspACI CCGC 4 cut(s) 61, 196, 282, 509
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 402, 487
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 183
BspPI GGATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 3, 71, 361
BssSI CACGAG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 31, 389, 495
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 3 cut(s) 185, 279, 294
BstKTI GATC 3 cut(s) 6, 74, 364
BstMAI GTCTC 3 cut(s) 87, 92, 302
BstMBI GATC 3 cut(s) 3, 71, 361
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 120, 297
BstUI CGCG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 402, 454
CfoI GCGC 3 cut(s) 185, 279, 294
Cfr13I GGNCC 2 cut(s) 424, 466
Csp6I GTAC 3 cut(s) 247, 340, 446
CviJI RGCY 7 cut(s) 38, 156, 162, 368, 439, 503, 521
CviKI_1 RGCY 7 cut(s) 38, 156, 162, 368, 439, 503, 521
CviQI GTAC 3 cut(s) 247, 340, 446
DdeI CTNAG 3 cut(s) 31, 389, 495
DpnI GATC 3 cut(s) 5, 73, 363
DpnII GATC 3 cut(s) 3, 71, 361
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 3 cut(s) 185, 271, 498
Ecl136II GAGCTC 1 cut(s) 503
Eco24I GRGCYC 2 cut(s) 370, 505
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 424, 466
Eco47III AGCGCT 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 120
EcoT38I GRGCYC 2 cut(s) 370, 505
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 1 cut(s) 223
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 2 cut(s) 370, 505
Fsp4HI GCNGC 1 cut(s) 61
GlaI GCGC 3 cut(s) 184, 278, 293
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 1 cut(s) 38
HapII CCGG 3 cut(s) 298, 443, 515
HhaI GCGC 3 cut(s) 185, 279, 294
Hin6I GCGC 3 cut(s) 183, 277, 292
HinP1I GCGC 3 cut(s) 183, 277, 292
HincII GTYRAC 2 cut(s) 127, 265
HindII GTYRAC 2 cut(s) 127, 265
HinfI GANTC 3 cut(s) 22, 266, 429
HpaII CCGG 3 cut(s) 298, 443, 515
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 127, 265
Hpy188I TCNGA 4 cut(s) 27, 392, 428, 496
Hpy188III TCNNGA 4 cut(s) 151, 349, 515, 525
Hpy8I GTNNAC 2 cut(s) 127, 265
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 261
HpyF3I CTNAG 3 cut(s) 31, 389, 495
HpySE526I ACGT 1 cut(s) 261
HspAI GCGC 3 cut(s) 183, 277, 292
Kpn2I TCCGGA 1 cut(s) 514
Kzo9I GATC 3 cut(s) 3, 71, 361
LmnI GCTCC 3 cut(s) 284, 351, 508
LpnPI CCDG 9 cut(s) 64, 107, 134, 257, 311, 334, 449, 456, 482
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 148, 430
MalI GATC 3 cut(s) 5, 73, 363
MboI GATC 3 cut(s) 3, 71, 361
MboII GAAGA 6 cut(s) 109, 198, 229, 316, 371, 452
MhlI GDGCHC 2 cut(s) 370, 505
MluCI AATT 2 cut(s) 202, 415
MlyI GAGTC 2 cut(s) 260, 438
MmeI TCCRAC 1 cut(s) 50
MroI TCCGGA 1 cut(s) 514
MseI TTAA 2 cut(s) 177, 213
MspI CCGG 3 cut(s) 298, 443, 515
MspR9I CCNGG 2 cut(s) 122, 299
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 183
NciI CCSGG 1 cut(s) 299
NdeII GATC 3 cut(s) 3, 71, 361
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 148, 430
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 171, 417
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 2 cut(s) 260, 437
PpsI GAGTC 2 cut(s) 260, 437
Psp124BI GAGCTC 1 cut(s) 505
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 2 cut(s) 424, 466
RsaI GTAC 3 cut(s) 248, 341, 447
RsaNI GTAC 3 cut(s) 247, 340, 446
SacI GAGCTC 1 cut(s) 505
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 177, 213
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 3 cut(s) 3, 71, 361
Sau96I GGNCC 2 cut(s) 424, 466
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 2 cut(s) 260, 438
ScrFI CCNGG 2 cut(s) 122, 299
SduI GDGCHC 2 cut(s) 370, 505
SetI ASST 9 cut(s) 32, 117, 221, 257, 264, 318, 426, 441, 505
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 2 cut(s) 424, 466
Sse9I AATT 2 cut(s) 202, 415
SsiI CCGC 4 cut(s) 61, 196, 282, 509
SstI GAGCTC 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 120, 297
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 1 cut(s) 264
TaqI TCGA 7 cut(s) 99, 209, 264, 318, 330, 364, 420
TasI AATT 2 cut(s) 202, 415
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 177, 213
Tru9I TTAA 2 cut(s) 177, 213
TscAI CASTG 2 cut(s) 409, 461
TseFI GTSAC 2 cut(s) 148, 430
Tsp45I GTSAC 2 cut(s) 148, 430
TspDTI ATGAA 2 cut(s) 223, 316
TspRI CASTG 2 cut(s) 409, 461
VpaK11BI GGWCC 2 cut(s) 424, 466
XmiI GTMKAC 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.