Rh7BG171700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000349
Physical Location & Seq
Forward (+)
13382235 .. 13383816
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG171700.1

Sequence Viewer

Length: 249 bp
ATGGTTGCACTGCTTGGTCATTGTCCCAATCTCGAGACAATGGTTCTTTATCACCTTCGCACGAGGAATGAAGATGAGAAGCTACCAGAAGACGTCTTAGGTAAACTAGTTGAGCTCATAATGCCAAGGATCAAGCTACTTAAGATGAGAGGGTATTTTAGAACACAAGATGTCTTCAAGTTTGTGACTATGTTGAGAAGGCAAGGAGTAGTGGCGGAGAAGAATGTAGTTGATTCTCCTCAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

82

Amino Acids

9.6

Weight (kDa)

9.3

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 178
AhlI ACTAGT 1 cut(s) 106
AluBI AGCT 3 cut(s) 82, 115, 136
AluI AGCT 3 cut(s) 82, 115, 136
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 117
BauI CACGAG 1 cut(s) 61
BbsI GAAGAC 2 cut(s) 96, 166
Bbv12I GWGCWC 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 29
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 1 cut(s) 107
BfrI CTTAAG 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 96, 166
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 97
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 96, 166
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 8
CviJI RGCY 3 cut(s) 82, 115, 136
CviKI_1 RGCY 3 cut(s) 82, 115, 136
DdeI CTNAG 1 cut(s) 97
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 125
FaiI YATR 2 cut(s) 119, 191
FaqI GGGAC 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 93
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 2 cut(s) 32, 34
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 65, 192
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 1 cut(s) 99
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 4 cut(s) 83, 101, 166, 232
MhlI GDGCHC 1 cut(s) 117
MnlI CCTC 3 cut(s) 57, 143, 249
MseI TTAA 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 32
PfeI GAWTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 117
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 57, 84, 96, 103, 117, 138
Sfr274I CTCGAG 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 32, 140
SmoI CTYRAG 2 cut(s) 32, 140
SpeI ACTAGT 1 cut(s) 106
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 117
StyI CCWWGG 1 cut(s) 125
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 33
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 1 cut(s) 107
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.