Rroxscaffold_2G00089420

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000349
Physical Location & Seq
Reverse (-)
11437604 .. 11441527
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089420.1

Sequence Viewer

Length: 1377 bp
ATGGGCAGCATGGCAGCAGTTGCTCAAGTCCTTCTCCTCCACGCCAGACGCCTCCGCTGCCCTAACCGGAGCCTCAACGACCTCCCCGACGAGATCCTCCTCCACATCCTCTCCTTCCTCCCCACCCTCGACTCCGTCAACACCTCTCTCATCTCCCGCAGATGGCGACCCCTCTGGTCCCTCGTTCCGTCCTTGAACTTCTCCTACCACCTCTTCCCTCCCGCCCCCCGATCCGATCTCAACCCGACCCAGGCCCAGGCCCAATTCTTCTCCGACTTTGTCGATCGCGCTCTCATTCTCCGCCCCGACTCCCCCATCCAAACCTTCCGCCTCTCCTTCATCTTCCACCAAGGCTACCACATCCACGTCGACTCTTGGATCCGCTGCGCCGTTACGCGTCTCAAGGCGCGTCAGCTGCACCTCGACTTCTTCATCGACGATAACTACCACGACGGAGACATCTGGTTTTATGATTTTCATCTCTCGTTGCTCAGACATGGATGTGTAGAAGTCTTGAGGCTCACGCATTGCTTCGTCACATTGCCGGCTAACATGTCCGCCATGAAGCTCAGCTCGCTGAGGTCAATTTTTATCGAACGAATTGATCTGACGGATGAGATGGTCCGGGATTTGGTTTCGGGGTGTCCGAATCTCGAGGACTTGGAGCTTCGGAGCTGTGTGGGGTTGAAGAATTTGAATATATGTAGCAGTAGGATTAAGAAGCTAGCGCTTGGGTATGATTATGATAGTGAGTCCAAGCAGAGCATTGAGATTGATTGCCCAAATCTTTGTTCGTTGAGTTTTAGTGACTGTAGTTCTGCTCAGTTTGTGCTTAAGGAAGCGTCGGCCCTGGTTGAGTTTCGTGTTGATTTTGCTTGCTTAACTGATAAGTACTTTGATTTGTGGAGTAAGATTGTGAGGCTACTGGAGCAGGCGCCTCATGTTGAGAAGCTTAATGTGCAAAATTGGTGGTATAAGCTTCTGATATCCGAGGATCCTTTCCCTAAAGATTTTAAGCTCAATAATCTCAACCATTTAGAGCTACGGACTGGTCATACTCAATATGATCTGGTTGGCATGGCTGCACTGCTTAAACTTTGTCCCAATCTCCAGACAATGGTTCTTGATTACATTGACAAGATGAAAGAAGATGAGAATTTACCGGAAGAGTTCTTAAATGAACTAGTTGAGTTCAACATGCCAAAGCTGAAGAAAGTTACAATCATAGCGTATACTGGAACAGAAGTGCAACTTAATTTTGTGACTATCTTGAAAAAGCAAGGAGTAAAGATTGAACTTGCTTACGTCTTATATCTTGAGATTTATGCTTTGGCGAATTCTCCCGAAAACGCCTCGGAGTACGCCTTAATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

458

Amino Acids

52.9

Weight (kDa)

5.8

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 63 7.4e-09 F-box domain
F-box-like PF12937 25 - 56 5.2e-08 F-box-like
LRR_At1g61320_AtMIF1 PF23622 108 - 413 1.1e-24 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 160 - 270 6.7e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 934
AccB7I CCANNNNNTGG 1 cut(s) 1117
AccI GTMKAC 2 cut(s) 369, 1232
AccII CGCG 3 cut(s) 288, 397, 409
AciI CCGC 7 cut(s) 55, 157, 222, 301, 328, 382, 558
AclWI GGATC 6 cut(s) 88, 225, 373, 386, 989, 1002
AcsI RAATTY 3 cut(s) 691, 1156, 1336
AcuI CTGAAG 1 cut(s) 1229
AcyI GRCGYC 2 cut(s) 49, 935
AfaI GTAC 2 cut(s) 893, 1361
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 5 cut(s) 162, 250, 256, 631, 1117
AflII CTTAAG 1 cut(s) 833
AflIII ACRYGT 2 cut(s) 395, 552
AgsI TTSAA 6 cut(s) 196, 688, 697, 1195, 1273, 1295
AhlI ACTAGT 1 cut(s) 1183
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 3 cut(s) 249, 255, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
Alw26I GTCTC 2 cut(s) 404, 450
AlwI GGATC 6 cut(s) 88, 225, 373, 386, 989, 1002
Ama87I CYCGRG 1 cut(s) 653
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 3 cut(s) 252, 258, 846
ApeKI GCWGC 6 cut(s) 6, 14, 57, 384, 415, 1082
ApoI RAATTY 3 cut(s) 691, 1156, 1336
AspLEI GCGC 5 cut(s) 290, 389, 409, 730, 937
AspS9I GGNCC 5 cut(s) 177, 253, 259, 622, 847
AsuC2I CCSGG 1 cut(s) 626
AsuNHI GCTAGC 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 2 cut(s) 177, 622
BamHI GGATCC 2 cut(s) 378, 994
BanI GGYRCC 1 cut(s) 934
BbvCI CCTCAGC 1 cut(s) 578
BbvI GCAGC 6 cut(s) 18, 26, 44, 371, 402, 1069
BccI CCATC 3 cut(s) 156, 323, 613
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 3 cut(s) 251, 257, 851
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 404, 450
BcuI ACTAGT 1 cut(s) 1183
BfaI CTAG 2 cut(s) 725, 1184
BfmI CTRYAG 1 cut(s) 811
BfoI RGCGCY 2 cut(s) 731, 938
BfrI CTTAAG 1 cut(s) 833
BisI GCNGC 6 cut(s) 7, 15, 58, 385, 416, 1083
BlpI GCTNAGC 1 cut(s) 569
BlsI GCNGC 6 cut(s) 8, 16, 59, 386, 417, 1084
BmcAI AGTACT 1 cut(s) 893
Bme1390I CCNGG 4 cut(s) 251, 257, 626, 851
Bme18I GGWCC 2 cut(s) 177, 622
BmeT110I CYCGRG 1 cut(s) 653
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 5 cut(s) 177, 253, 259, 622, 847
BmiI GGNNCC 5 cut(s) 71, 179, 380, 936, 996
BmrFI CCNGG 4 cut(s) 251, 257, 626, 851
BmtI GCTAGC 1 cut(s) 728
BpmI CTGGAG 2 cut(s) 947, 1094
Bpu10I CCTNAGC 1 cut(s) 578
Bpu1102I GCTNAGC 1 cut(s) 569
BpuEI CTTGAG 4 cut(s) 9, 386, 535, 1337
BpuMI CCSGG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 477
BsaHI GRCGYC 2 cut(s) 49, 935
BsaJI CCNNGG 6 cut(s) 249, 255, 349, 849, 990, 1353
BsaWI WCCGGW 2 cut(s) 66, 1162
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 250, 256, 631, 1117
Bse118I RCCGGY 1 cut(s) 544
Bse1I ACTGG 3 cut(s) 930, 1054, 1240
Bse3DI GCAATG 2 cut(s) 526, 539
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 3 cut(s) 251, 257, 851
BseDI CCNNGG 6 cut(s) 249, 255, 349, 849, 990, 1353
BseGI GGATG 5 cut(s) 105, 315, 360, 506, 619
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 5 cut(s) 162, 250, 256, 631, 1117
BseMI GCAATG 2 cut(s) 526, 539
BseMII CTCAG 4 cut(s) 505, 569, 583, 836
BseNI ACTGG 3 cut(s) 930, 1054, 1240
BseRI GAGGAG 2 cut(s) 26, 89
BseXI GCAGC 6 cut(s) 18, 26, 44, 371, 402, 1069
BsgI GTGCAG 2 cut(s) 401, 1068
Bsh1236I CGCG 3 cut(s) 288, 397, 409
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 3 cut(s) 254, 260, 848
BshNI GGYRCC 1 cut(s) 934
BsiEI CGRYCG 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 4 cut(s) 67, 545, 625, 1163
BslFI GGGAC 2 cut(s) 163, 1086
BslI CCNNNNNNNGG 5 cut(s) 162, 250, 256, 631, 1117
BsmAI GTCTC 2 cut(s) 404, 450
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 2 cut(s) 163, 1086
BsnI GGCC 3 cut(s) 254, 260, 848
BsoBI CYCGRG 1 cut(s) 653
Bsp143I GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
Bsp1720I GCTNAGC 1 cut(s) 569
BspACI CCGC 7 cut(s) 55, 157, 222, 301, 328, 382, 558
BspANI GGCC 3 cut(s) 254, 260, 848
BspCNI CTCAG 4 cut(s) 504, 570, 582, 835
BspFNI CGCG 3 cut(s) 288, 397, 409
BspLI GGNNCC 5 cut(s) 71, 179, 380, 936, 996
BspOI GCTAGC 1 cut(s) 728
BspPI GGATC 6 cut(s) 88, 225, 373, 386, 989, 1002
BspT107I GGYRCC 1 cut(s) 934
BspTI CTTAAG 1 cut(s) 833
BsrDI GCAATG 2 cut(s) 526, 539
BsrFI RCCGGY 1 cut(s) 544
BsrI ACTGG 3 cut(s) 930, 1054, 1240
BssAI RCCGGY 1 cut(s) 544
BssECI CCNNGG 6 cut(s) 249, 255, 349, 849, 990, 1353
BssMI GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
BssNAI GTATAC 1 cut(s) 1233
BssNI GRCGYC 2 cut(s) 49, 935
BssT1I CCWWGG 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 1233
Bst2UI CCWGG 3 cut(s) 251, 257, 851
Bst4CI ACNGT 1 cut(s) 812
Bst6I CTCTTC 2 cut(s) 218, 1161
BstACI GRCGYC 2 cut(s) 49, 935
BstAFI CTTAAG 1 cut(s) 833
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 5 cut(s) 546, 575, 726, 877, 933
BstDEI CTNAG 4 cut(s) 491, 569, 578, 822
BstF5I GGATG 5 cut(s) 105, 315, 360, 506, 619
BstFNI CGCG 3 cut(s) 288, 397, 409
BstH2I RGCGCY 2 cut(s) 731, 938
BstHHI GCGC 5 cut(s) 290, 389, 409, 730, 937
BstKTI GATC 8 cut(s) 96, 233, 238, 286, 381, 607, 997, 1069
BstMAI GTCTC 2 cut(s) 404, 450
BstMBI GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 6 cut(s) 20, 57, 415, 574, 928, 958
BstNI CCWGG 3 cut(s) 251, 257, 851
BstNSI RCATGY 2 cut(s) 556, 1201
BstSCI CCNGG 4 cut(s) 249, 255, 624, 849
BstSFI CTRYAG 1 cut(s) 811
BstUI CGCG 3 cut(s) 288, 397, 409
BstV1I GCAGC 6 cut(s) 18, 26, 44, 371, 402, 1069
BstX2I RGATCY 3 cut(s) 93, 378, 994
BstYI RGATCY 3 cut(s) 93, 378, 994
BstZ17I GTATAC 1 cut(s) 1233
BsuRI GGCC 3 cut(s) 254, 260, 848
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 5 cut(s) 105, 315, 360, 506, 619
BtsI GCAGTG 1 cut(s) 1085
BtsIMutI CAGTG 1 cut(s) 1085
Cac8I GCNNGC 5 cut(s) 546, 575, 726, 877, 933
CfoI GCGC 5 cut(s) 290, 389, 409, 730, 937
Cfr10I RCCGGY 1 cut(s) 544
Cfr13I GGNCC 5 cut(s) 177, 253, 259, 622, 847
CseI GACGC 4 cut(s) 57, 386, 398, 831
Csp6I GTAC 2 cut(s) 892, 1360
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 7 cut(s) 10, 497, 553, 562, 941, 1078, 1198
CviQI GTAC 2 cut(s) 892, 1360
DdeI CTNAG 4 cut(s) 491, 569, 578, 822
DinI GGCGCC 1 cut(s) 936
DpnI GATC 8 cut(s) 95, 232, 237, 285, 380, 606, 996, 1068
DpnII GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
Eam1104I CTCTTC 2 cut(s) 218, 1161
EarI CTCTTC 2 cut(s) 218, 1161
EciI GGCGGA 3 cut(s) 290, 317, 547
Eco130I CCWWGG 1 cut(s) 349
Eco32I GATATC 1 cut(s) 987
Eco47I GGWCC 2 cut(s) 177, 622
Eco47III AGCGCT 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 1229
Eco88I CYCGRG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 1336
EcoRII CCWGG 3 cut(s) 249, 255, 849
EcoRV GATATC 1 cut(s) 987
EcoT14I CCWWGG 1 cut(s) 349
EgeI GGCGCC 1 cut(s) 936
EheI GGCGCC 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 7 cut(s) 13, 500, 556, 565, 944, 1081, 1201
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 2 cut(s) 163, 1086
FatI CATG 7 cut(s) 9, 496, 552, 561, 940, 1077, 1197
FauI CCCGC 2 cut(s) 164, 229
FblI GTMKAC 2 cut(s) 369, 1232
Fnu4HI GCNGC 6 cut(s) 7, 15, 58, 385, 416, 1083
FokI GGATG 5 cut(s) 92, 302, 347, 513, 626
Fsp4HI GCNGC 6 cut(s) 7, 15, 58, 385, 416, 1083
FspBI CTAG 2 cut(s) 725, 1184
GlaI GCGC 5 cut(s) 289, 388, 408, 729, 936
GluI GCNGC 6 cut(s) 7, 15, 58, 385, 416, 1083
GsuI CTGGAG 2 cut(s) 947, 1094
HaeII RGCGCY 2 cut(s) 731, 938
HaeIII GGCC 3 cut(s) 254, 260, 848
HapII CCGG 4 cut(s) 67, 545, 625, 1163
HgaI GACGC 4 cut(s) 57, 386, 398, 831
HhaI GCGC 5 cut(s) 290, 389, 409, 730, 937
Hin1I GRCGYC 2 cut(s) 49, 935
Hin1II CATG 7 cut(s) 13, 500, 556, 565, 944, 1081, 1201
Hin6I GCGC 5 cut(s) 288, 387, 407, 728, 935
HinP1I GCGC 5 cut(s) 288, 387, 407, 728, 935
HincII GTYRAC 2 cut(s) 139, 370
HindII GTYRAC 2 cut(s) 139, 370
HindIII AAGCTT 2 cut(s) 950, 977
HinfI GANTC 5 cut(s) 131, 308, 371, 649, 752
HpaII CCGG 4 cut(s) 67, 545, 625, 1163
Hpy166II GTNNAC 3 cut(s) 139, 370, 1233
Hpy188I TCNGA 9 cut(s) 235, 274, 494, 609, 648, 672, 984, 991, 1357
Hpy188III TCNNGA 7 cut(s) 514, 653, 1111, 1124, 1270, 1316, 1343
Hpy8I GTNNAC 3 cut(s) 139, 370, 1233
Hpy99I CGWCG 5 cut(s) 92, 371, 440, 455, 847
HpyAV CCTTC 4 cut(s) 41, 124, 334, 346
HpyCH4III ACNGT 1 cut(s) 812
HpyCH4IV ACGT 2 cut(s) 366, 1305
HpyCH4V TGCA 4 cut(s) 418, 961, 1085, 1249
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 57, 415, 574, 928, 958
HpyF3I CTNAG 4 cut(s) 491, 569, 578, 822
HpySE526I ACGT 2 cut(s) 366, 1305
Hsp92I GRCGYC 2 cut(s) 49, 935
Hsp92II CATG 7 cut(s) 13, 500, 556, 565, 944, 1081, 1201
HspAI GCGC 5 cut(s) 288, 387, 407, 728, 935
KasI GGCGCC 1 cut(s) 934
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
LmnI GCTCC 4 cut(s) 69, 664, 672, 928
Lsp1109I GCAGC 6 cut(s) 18, 26, 44, 371, 402, 1069
MaeI CTAG 2 cut(s) 725, 1184
MaeII ACGT 2 cut(s) 366, 1305
MaeIII GTNAC 5 cut(s) 391, 535, 806, 1216, 1261
MalI GATC 8 cut(s) 95, 232, 237, 285, 380, 606, 996, 1068
MboI GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
MboII GAAGA 8 cut(s) 205, 259, 334, 421, 700, 1160, 1178, 1222
MflI RGATCY 3 cut(s) 93, 378, 994
MluCI AATT 8 cut(s) 263, 585, 600, 691, 964, 1156, 1255, 1336
MluI ACGCGT 1 cut(s) 395
Mly113I GGCGCC 1 cut(s) 935
MlyI GAGTC 4 cut(s) 125, 302, 365, 761
MmeI TCCRAC 1 cut(s) 297
MroNI GCCGGC 1 cut(s) 544
MslI CAYNNNNRTG 1 cut(s) 501
MspA1I CMGCKG 3 cut(s) 57, 384, 415
MspCI CTTAAG 1 cut(s) 833
MspI CCGG 4 cut(s) 67, 545, 625, 1163
MspR9I CCNGG 4 cut(s) 251, 257, 626, 851
MvaI CCWGG 3 cut(s) 251, 257, 851
MvnI CGCG 3 cut(s) 288, 397, 409
MwoI GCNNNNNNNGC 6 cut(s) 20, 57, 415, 574, 928, 958
NaeI GCCGGC 1 cut(s) 546
NarI GGCGCC 1 cut(s) 935
NciI CCSGG 1 cut(s) 626
NdeII GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
NgoMIV GCCGGC 1 cut(s) 544
NheI GCTAGC 1 cut(s) 724
NlaIII CATG 7 cut(s) 13, 500, 556, 565, 944, 1081, 1201
NlaIV GGNNCC 5 cut(s) 71, 179, 380, 936, 996
NmuCI GTSAC 3 cut(s) 535, 806, 1261
NspI RCATGY 2 cut(s) 556, 1201
PaeR7I CTCGAG 1 cut(s) 653
PciI ACATGT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 644
PdiI GCCGGC 1 cut(s) 546
PfeI GAWTC 1 cut(s) 649
PflFI GACNNNGTC 2 cut(s) 134, 278
PflMI CCANNNNNTGG 1 cut(s) 1117
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 6 cut(s) 8, 16, 59, 386, 417, 1084
Ple19I CGATCG 1 cut(s) 286
PleI GAGTC 4 cut(s) 125, 302, 365, 760
PluTI GGCGCC 1 cut(s) 938
PpsI GAGTC 4 cut(s) 125, 302, 365, 760
PscI ACATGT 1 cut(s) 552
Psp6I CCWGG 3 cut(s) 249, 255, 849
PspGI CCWGG 3 cut(s) 249, 255, 849
PspN4I GGNNCC 5 cut(s) 71, 179, 380, 936, 996
PspPI GGNCC 5 cut(s) 177, 253, 259, 622, 847
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
PsuI RGATCY 3 cut(s) 93, 378, 994
PsyI GACNNNGTC 2 cut(s) 134, 278
PvuI CGATCG 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 2 cut(s) 893, 1361
RsaNI GTAC 2 cut(s) 892, 1360
RseI CAYNNNNRTG 1 cut(s) 501
SalI GTCGAC 1 cut(s) 368
SatI GCNGC 6 cut(s) 7, 15, 58, 385, 416, 1083
Sau3AI GATC 8 cut(s) 93, 230, 235, 283, 378, 604, 994, 1066
Sau96I GGNCC 5 cut(s) 177, 253, 259, 622, 847
ScaI AGTACT 1 cut(s) 893
SchI GAGTC 4 cut(s) 125, 302, 365, 761
ScrFI CCNGG 4 cut(s) 251, 257, 626, 851
SfcI CTRYAG 1 cut(s) 811
SfoI GGCGCC 1 cut(s) 936
Sfr274I CTCGAG 1 cut(s) 653
SinI GGWCC 2 cut(s) 177, 622
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 6 cut(s) 24, 401, 514, 653, 833, 1316
SmoI CTYRAG 6 cut(s) 24, 401, 514, 653, 833, 1316
SpeI ACTAGT 1 cut(s) 1183
Sse9I AATT 8 cut(s) 263, 585, 600, 691, 964, 1156, 1255, 1336
SsiI CCGC 7 cut(s) 55, 157, 222, 301, 328, 382, 558
SspDI GGCGCC 1 cut(s) 934
SspMI CTAG 2 cut(s) 725, 1184
StyD4I CCNGG 4 cut(s) 249, 255, 624, 849
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 812
TaiI ACGT 2 cut(s) 369, 1308
TaqI TCGA 7 cut(s) 129, 282, 369, 423, 435, 594, 654
TasI AATT 8 cut(s) 263, 585, 600, 691, 964, 1156, 1255, 1336
TatI WGTACW 1 cut(s) 891
TfiI GAWTC 1 cut(s) 649
TscAI CASTG 1 cut(s) 1092
TseFI GTSAC 3 cut(s) 535, 806, 1261
TseI GCWGC 6 cut(s) 6, 14, 57, 384, 415, 1082
Tsp45I GTSAC 3 cut(s) 535, 806, 1261
TspDTI ATGAA 6 cut(s) 328, 421, 467, 578, 1157, 1194
TspGWI ACGGA 5 cut(s) 124, 177, 468, 626, 1060
TspRI CASTG 1 cut(s) 1092
Tth111I GACNNNGTC 2 cut(s) 134, 278
Van91I CCANNNNNTGG 1 cut(s) 1117
Vha464I CTTAAG 1 cut(s) 833
VpaK11BI GGWCC 2 cut(s) 177, 622
XapI RAATTY 3 cut(s) 691, 1156, 1336
XceI RCATGY 2 cut(s) 556, 1201
XhoI CTCGAG 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 369, 1232
XspI CTAG 2 cut(s) 725, 1184
ZrmI AGTACT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.