Rh1AG011000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000349
Physical Location & Seq
Forward (+)
1801369 .. 1801863
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG011000.1

Sequence Viewer

Length: 495 bp
ATGGCGATCCCTCTGGTCCTGTCTCCCCTTCCTCGAATTCTCCTACCACCTCTTCCGGTCAATGACGCCGAACCCCTCCCCGTCACGAGCCACGGCTTCGCCGAGTTCATCAATTGCGCTCTCATTCTCCGCCCCAATTCTCCGATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCGCTCTGCTGTCACTCGCTTCCGGGTGCGTGAGCCTAACCTCAACTTCTTCATCGACAAAGAGTACCATCTCTGGAGCAAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCACGCACGTCGATCTCACATTACCAGCCAGCATGGCCATGGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGACGGACCAGATGTGGGAGAGTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

164

Amino Acids

18.92

Weight (kDa)

6.19

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 130, 157, 305
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 182, 275
AfiI CCNNNNNNNGG 1 cut(s) 463
AjiI CACGTC 2 cut(s) 196, 370
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw21I GWGCWC 1 cut(s) 416
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 36
AspLEI GCGC 2 cut(s) 119, 213
AspS9I GGNCC 3 cut(s) 16, 423, 454
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 3 cut(s) 16, 423, 454
BalI TGGCCA 1 cut(s) 398
BanII GRGCYC 2 cut(s) 304, 416
BauI CACGAG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 416
BccI CCATC 1 cut(s) 285
BceAI ACGGC 2 cut(s) 109, 361
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 395
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 3 cut(s) 16, 423, 454
BmgBI CACGTC 2 cut(s) 196, 370
BmgT120I GGNCC 3 cut(s) 16, 423, 454
BmrFI CCNGG 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 91, 399
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 91, 399
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 416
BsiSI CCGG 2 cut(s) 56, 232
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 304, 416
Bsp143I GATC 4 cut(s) 6, 144, 295, 373
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 3 cut(s) 130, 157, 305
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 330
BspFNI CGCG 1 cut(s) 307
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 91, 399
BssMI GATC 4 cut(s) 6, 144, 295, 373
BssNI GRCGYC 1 cut(s) 66
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 338
BstDSI CCRYGG 2 cut(s) 91, 399
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 307
BstHHI GCGC 2 cut(s) 119, 213
BstKTI GATC 4 cut(s) 9, 147, 298, 376
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 6, 144, 295, 373
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 231
BstUI CGCG 1 cut(s) 307
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 2 cut(s) 91, 399
BtrI CACGTC 2 cut(s) 196, 370
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 2 cut(s) 119, 213
Cfr13I GGNCC 3 cut(s) 16, 423, 454
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 181, 274
CviAII CATG 3 cut(s) 394, 400, 427
CviQI GTAC 2 cut(s) 181, 274
DdeI CTNAG 1 cut(s) 338
DpnI GATC 4 cut(s) 8, 146, 297, 375
DpnII GATC 4 cut(s) 6, 144, 295, 373
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 2 cut(s) 119, 146
Ecl136II GAGCTC 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 399
Eco24I GRGCYC 2 cut(s) 304, 416
Eco47I GGWCC 3 cut(s) 16, 423, 454
Eco53kI GAGCTC 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 399
EcoT38I GRGCYC 2 cut(s) 304, 416
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 3 cut(s) 397, 403, 430
FaiI YATR 5 cut(s) 318, 395, 401, 428, 493
FatI CATG 3 cut(s) 393, 399, 426
FauI CCCGC 1 cut(s) 312
FblI GTMKAC 1 cut(s) 198
FokI GGATG 1 cut(s) 452
FriOI GRGCYC 2 cut(s) 304, 416
GlaI GCGC 2 cut(s) 118, 212
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 56, 232
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 119, 213
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 3 cut(s) 397, 403, 430
Hin6I GCGC 2 cut(s) 117, 211
HinP1I GCGC 2 cut(s) 117, 211
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 56, 232
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 85, 283, 434
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 200, 374
HpyAV CCTTC 2 cut(s) 38, 163
HpyCH4IV ACGT 2 cut(s) 195, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 2 cut(s) 195, 369
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 3 cut(s) 397, 403, 430
HspAI GCGC 2 cut(s) 117, 211
Kzo9I GATC 4 cut(s) 6, 144, 295, 373
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 8 cut(s) 32, 69, 191, 245, 268, 399, 403, 470
MaeII ACGT 2 cut(s) 195, 369
MaeIII GTNAC 3 cut(s) 82, 220, 308
MalI GATC 4 cut(s) 8, 146, 297, 375
MboI GATC 4 cut(s) 6, 144, 295, 373
MboII GAAGA 4 cut(s) 44, 163, 250, 305
MfeI CAATTG 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 304, 416
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 3 cut(s) 36, 112, 136
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 398
Msp20I TGGCCA 1 cut(s) 398
MspI CCGG 2 cut(s) 56, 232
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 112
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 399
NdeII GATC 4 cut(s) 6, 144, 295, 373
NlaIII CATG 3 cut(s) 397, 403, 430
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 3 cut(s) 82, 220, 308
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 304
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 416
PspPI GGNCC 3 cut(s) 16, 423, 454
RsaI GTAC 2 cut(s) 182, 275
RsaNI GTAC 2 cut(s) 181, 274
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 416
SalI GTCGAC 1 cut(s) 197
Sau3AI GATC 4 cut(s) 6, 144, 295, 373
Sau96I GGNCC 3 cut(s) 16, 423, 454
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 304, 416
SetI ASST 8 cut(s) 52, 155, 191, 198, 252, 372, 416, 425
SinI GGWCC 3 cut(s) 16, 423, 454
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 36, 112, 136
SsiI CCGC 3 cut(s) 130, 157, 305
SstI GAGCTC 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 399
TaiI ACGT 2 cut(s) 198, 372
TaqI TCGA 5 cut(s) 34, 198, 264, 298, 372
TasI AATT 3 cut(s) 36, 112, 136
TatI WGTACW 1 cut(s) 180
TseFI GTSAC 3 cut(s) 82, 220, 308
Tsp45I GTSAC 3 cut(s) 82, 220, 308
TspDTI ATGAA 3 cut(s) 97, 157, 250
TspGWI ACGGA 1 cut(s) 467
VpaK11BI GGWCC 3 cut(s) 16, 423, 454
XapI RAATTY 1 cut(s) 36
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 198
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.