Rw2G045590

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000349
Physical Location & Seq
Forward (+)
72603375 .. 72603785
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045590.1

Sequence Viewer

Length: 300 bp
ATGGCTGCAGTACTTGAACTTTGTCCCAATCTTGAGACAATGATTCTTGATTACCTTCGCAAGATAGAAGTTGATGAGAGTTTACCAGAAGAGATCTTAAATAAACCAGTTAGATTCAATATGCCAAGACTCAAGCAAGTTAAGATGCTGAAATTTTTTGGATCGGAAGATGAAAATAATTTTGTGACTTTGTTGAAAAAGCAAGGAGTTGTCTTACAAAAGATTACACTTTTTCCTATCAAAGTCGAGGGGAACTCATGCCACCAATATCCTCCAATAGTTCTACGTAGAAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

99

Amino Acids

11.51

Weight (kDa)

8.62

Isoelectric Point (pI)

63.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 3 cut(s) 17, 118, 196
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmcAI AGTACT 1 cut(s) 12
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 2 cut(s) 53, 116
BsaAI YACGTR 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 93, 161
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 107
BssMI GATC 2 cut(s) 93, 161
Bst6I CTCTTC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 287
BstKTI GATC 2 cut(s) 96, 164
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 2 cut(s) 93, 161
BstSFI CTRYAG 1 cut(s) 6
BstSNI TACGTA 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 258
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 11
DpnI GATC 2 cut(s) 95, 163
DpnII GATC 2 cut(s) 93, 161
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco105I TACGTA 1 cut(s) 287
FaeI CATG 1 cut(s) 261
FaiI YATR 2 cut(s) 122, 259
FaqI GGGAC 1 cut(s) 9
FatI CATG 1 cut(s) 257
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 261
HinfI GANTC 3 cut(s) 43, 114, 129
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 32, 47
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 93, 161
LpnPI CCDG 2 cut(s) 99, 120
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 95, 163
MboI GATC 2 cut(s) 93, 161
MboII GAAGA 2 cut(s) 101, 179
MflI RGATCY 1 cut(s) 93
MluCI AATT 2 cut(s) 152, 178
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 2 cut(s) 241, 282
MseI TTAA 2 cut(s) 98, 141
NdeII GATC 2 cut(s) 93, 161
NlaIII CATG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 43, 114
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 287
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 2 cut(s) 98, 141
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 93, 161
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 123
SetI ASST 2 cut(s) 57, 289
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 32, 131
SmoI CTYRAG 2 cut(s) 32, 131
SnaBI TACGTA 1 cut(s) 287
Sse9I AATT 2 cut(s) 152, 178
TaiI ACGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 152, 178
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 43, 114
Tru1I TTAA 2 cut(s) 98, 141
Tru9I TTAA 2 cut(s) 98, 141
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 186
XapI RAATTY 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.