Rorug06G0149200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000349
Physical Location & Seq
Reverse (-)
21319717 .. 21320234
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0149200.1

Sequence Viewer

Length: 285 bp
ATGGCGATGGTGCAGTGGTGCGGCGCAGCGGCGAGGCGAGTGTTGGTGAGGGAGCACCGTGCCCTCTTCACGACCTCGTCATCGCCGACGTCATCAGCTCAAAGCAGTGTAATCGGGGCTCCGATGCTGTGCGGGCGAGGGGACAAGAAGACGAAGAAGGGGAAGCGGTTCAAAGGGTCGTACGGGAACGCTAGGCCGAAGAAGGAGAAGATGATCGAGCGCATCAAGGACAAGGTTGAGGTTCCCAGGTCCACTCCTTGGCCTCTCCCTTTCAAGCTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

94

Amino Acids

10.47

Weight (kDa)

10.86

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPS31 PF17067 23 - 86 5.4e-12 Ribosomal protein S31e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 4 cut(s) 21, 29, 132, 166
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 2 cut(s) 172, 274
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 2 cut(s) 98, 277
AluI AGCT 2 cut(s) 98, 277
Alw21I GWGCWC 1 cut(s) 57
AoxI GGCC 2 cut(s) 194, 260
ApeKI GCWGC 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 2 cut(s) 26, 222
AspS9I GGNCC 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 192
BisI GCNGC 3 cut(s) 22, 27, 30
BlsI GCNGC 3 cut(s) 23, 28, 31
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 120, 243
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 114, 231
BpiI GAAGAC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 245, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 245, 257
BseLI CCNNNNNNNGG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 2 cut(s) 196, 262
BsiHKAI GWGCWC 1 cut(s) 57
BsiWI CGTACG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 2 cut(s) 196, 262
Bsp1286I GDGCHC 3 cut(s) 57, 64, 121
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 4 cut(s) 21, 29, 132, 166
BspANI GGCC 2 cut(s) 196, 262
BspLI GGNNCC 2 cut(s) 120, 243
BssECI CCNNGG 2 cut(s) 245, 257
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 134
BstHHI GCGC 2 cut(s) 26, 222
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 245
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 196, 262
BtgZI GCGATG 2 cut(s) 20, 66
BtsI GCAGTG 2 cut(s) 20, 112
BtsIMutI CAGTG 2 cut(s) 20, 112
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 2 cut(s) 26, 222
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 5 cut(s) 98, 119, 196, 262, 277
CviKI_1 RGCY 5 cut(s) 98, 119, 196, 262, 277
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 257
FaqI GGGAC 1 cut(s) 155
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 22, 27, 30
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 3 cut(s) 22, 27, 30
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 25, 221
GluI GCNGC 3 cut(s) 22, 27, 30
HaeIII GGCC 2 cut(s) 196, 262
HhaI GCGC 2 cut(s) 26, 222
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 2 cut(s) 24, 220
HinP1I GCGC 2 cut(s) 24, 220
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 151, 196
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 2 cut(s) 24, 220
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 52, 124
LpnPI CCDG 2 cut(s) 232, 259
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 114, 231
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 89
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 58, 160, 166, 211, 220
MhlI GDGCHC 3 cut(s) 57, 64, 121
MnlI CCTC 7 cut(s) 27, 42, 74, 85, 131, 232, 273
MroXI GAANNNNTTC 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 1 cut(s) 213
NlaIV GGNNCC 2 cut(s) 120, 243
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 167
Pfl23II CGTACG 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 3 cut(s) 23, 28, 31
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspLI CGTACG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 120, 243
PspPI GGNCC 1 cut(s) 249
PsyI GACNNNGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 3 cut(s) 22, 27, 30
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 3 cut(s) 57, 64, 121
SetI ASST 7 cut(s) 77, 92, 100, 237, 243, 251, 279
SfaNI GCATC 2 cut(s) 114, 231
SinI GGWCC 1 cut(s) 249
SsiI CCGC 4 cut(s) 21, 29, 132, 166
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 216
TauI GCSGC 2 cut(s) 24, 32
TscAI CASTG 2 cut(s) 20, 112
TseI GCWGC 1 cut(s) 26
TspRI CASTG 2 cut(s) 20, 112
Tth111I GACNNNGTC 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.