Rh2BG217000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000349
Physical Location & Seq
Forward (+)
20774599 .. 20790179
15581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG217000.1

Sequence Viewer

Length: 897 bp
ATGAAGCAAGCACTACAGGTCTACAAGACATGCAGCTGGTGCGTTGAAGGCTTTGATTACCACTGCACGAAGTGGAGTGCTATTGCAGGAGCCCGACTATCCGGTTCTGATGATGTAGATTTGGATTATCCTAATCATAAAGTTTCTAAGGCAACAAGAACCAATTATCAAAATTTTTCAGCTGTTTTAGAGGATATATTTCTAGATAATCGCCGGCGGTGGGATGTGGAAATTGGGTTGGGTGGCCTGGGTGCCCAAATCAAAATGGGTATGGGCTTGGATATGTGTTGGTTTGGTACGGGACTTGGATCTAAGACCAACTTTTGGGCCCGAATTTGGGATCCAGAGGCCATCCACAACTCCCTCGTCTCCCGCCAATGGCGATCCTTCTGGTCCCGTCTCCCCTTACTCGACTTCTCCTACCACCTCTTCCCAGTCAACGACGCCGAACCCCTCCCCATCACGAGCCACAGCTTCACTGAGTTAGTCAACCGCGCTCTCATTCTCCACCCTAATTCTCCGATCAAAACCTTTCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCGCTCCGCCGTCACGCGCTTCCGGGTGCATGAGCCTGACCTCGACTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTACTGAGAAACGGCTGTGTTGAGAGGCTCACGCGCGTCGATCTCGCGTTGCCGGCGAGCATGGCCACGGCGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGACGGACCAAATGTGGGAGAGTTTGATTTTGGGGCTCAGTGTCGCCGAAATGGCCTCCGCCCCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

298

Amino Acids

34.29

Weight (kDa)

5.71

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 2 cut(s) 21, 576
AccII CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
AciI CCGC 7 cut(s) 217, 373, 493, 594, 683, 782, 885
AclWI GGATC 4 cut(s) 316, 335, 348, 378
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 172, 333
AcyI GRCGYC 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 72
AfaI GTAC 4 cut(s) 298, 560, 653, 714
AfiI CCNNNNNNNGG 6 cut(s) 220, 324, 336, 337, 378, 841
AgsI TTSAA 1 cut(s) 47
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 4 cut(s) 36, 182, 474, 792
AluI AGCT 4 cut(s) 36, 182, 474, 792
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 2 cut(s) 373, 404
AlwI GGATC 4 cut(s) 316, 335, 348, 378
AoxI GGCC 5 cut(s) 244, 327, 348, 774, 879
ApaI GGGCCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 2 cut(s) 172, 333
AspLEI GCGC 4 cut(s) 497, 591, 606, 747
AspS9I GGNCC 5 cut(s) 327, 328, 393, 801, 832
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 1 cut(s) 808
AvaII GGWCC 3 cut(s) 393, 801, 832
BaeGI GKGCMC 2 cut(s) 256, 331
BalI TGGCCA 1 cut(s) 776
BamHI GGATCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 5 cut(s) 94, 331, 682, 794, 864
BauI CACGAG 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 794
BbvI GCAGC 1 cut(s) 45
BccI CCATC 3 cut(s) 359, 467, 663
BceAI ACGGC 3 cut(s) 581, 739, 795
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 2 cut(s) 373, 404
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 878
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 2 cut(s) 248, 611
Bme18I GGWCC 3 cut(s) 393, 801, 832
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 5 cut(s) 327, 328, 393, 801, 832
BmiI GGNNCC 5 cut(s) 91, 253, 329, 342, 395
BmrFI CCNGG 2 cut(s) 248, 611
BmrI ACTGGG 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 1 cut(s) 611
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 247, 777
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bsc4I CCNNNNNNNGG 6 cut(s) 220, 324, 336, 337, 378, 841
Bse118I RCCGGY 2 cut(s) 213, 763
Bse1I ACTGG 2 cut(s) 434, 556
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 247, 777
BseGI GGATG 3 cut(s) 229, 351, 823
BseLI CCNNNNNNNGG 6 cut(s) 220, 324, 336, 337, 378, 841
BseMII CTCAG 3 cut(s) 471, 707, 877
BseNI ACTGG 2 cut(s) 434, 556
BseSI GKGCMC 2 cut(s) 256, 331
BseXI GCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
BshFI GGCC 5 cut(s) 246, 329, 350, 776, 881
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 794
BsiSI CCGG 4 cut(s) 102, 214, 610, 764
BslFI GGGAC 2 cut(s) 315, 379
BslI CCNNNNNNNGG 6 cut(s) 220, 324, 336, 337, 378, 841
BsmAI GTCTC 2 cut(s) 373, 404
BsmBI CGTCTC 2 cut(s) 373, 404
BsmFI GGGAC 2 cut(s) 315, 379
BsnI GGCC 5 cut(s) 246, 329, 350, 776, 881
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 6 cut(s) 94, 256, 331, 682, 794, 864
Bsp143I GATC 6 cut(s) 308, 340, 383, 522, 673, 751
BspACI CCGC 7 cut(s) 217, 373, 493, 594, 683, 782, 885
BspANI GGCC 5 cut(s) 246, 329, 350, 776, 881
BspCNI CTCAG 3 cut(s) 472, 708, 876
BspFNI CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
BspLI GGNNCC 5 cut(s) 91, 253, 329, 342, 395
BspPI GGATC 4 cut(s) 316, 335, 348, 378
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 213, 763
BsrI ACTGG 2 cut(s) 434, 556
BssAI RCCGGY 2 cut(s) 213, 763
BssECI CCNNGG 2 cut(s) 247, 777
BssMI GATC 6 cut(s) 308, 340, 383, 522, 673, 751
BssNI GRCGYC 1 cut(s) 444
BssSI CACGAG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 4 cut(s) 9, 215, 765, 769
BstDEI CTNAG 5 cut(s) 147, 312, 480, 716, 863
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 229, 351, 823
BstFNI CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
BstHHI GCGC 4 cut(s) 497, 591, 606, 747
BstKTI GATC 6 cut(s) 311, 343, 386, 525, 676, 754
BstMAI GTCTC 2 cut(s) 373, 404
BstMBI GATC 6 cut(s) 308, 340, 383, 522, 673, 751
BstMWI GCNNNNNNNGC 5 cut(s) 39, 48, 764, 773, 878
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 246, 609
BstSFI CTRYAG 1 cut(s) 14
BstSLI GKGCMC 2 cut(s) 256, 331
BstUI CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 308, 340
BstYI RGATCY 2 cut(s) 308, 340
BsuRI GGCC 5 cut(s) 246, 329, 350, 776, 881
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 574
BtsCI GGATG 3 cut(s) 229, 351, 823
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 3 cut(s) 61, 477, 871
Cac8I GCNNGC 4 cut(s) 9, 215, 765, 769
CfoI GCGC 4 cut(s) 497, 591, 606, 747
Cfr10I RCCGGY 2 cut(s) 213, 763
Cfr13I GGNCC 5 cut(s) 327, 328, 393, 801, 832
CseI GACGC 2 cut(s) 452, 736
Csp6I GTAC 4 cut(s) 297, 559, 652, 713
CviAII CATG 4 cut(s) 30, 617, 772, 805
CviQI GTAC 4 cut(s) 297, 559, 652, 713
DdeI CTNAG 5 cut(s) 147, 312, 480, 716, 863
DpnI GATC 6 cut(s) 310, 342, 385, 524, 675, 753
DpnII GATC 6 cut(s) 308, 340, 383, 522, 673, 751
DraIII CACNNNGTG 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 774
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 2 cut(s) 583, 874
Ecl136II GAGCTC 1 cut(s) 792
Eco24I GRGCYC 5 cut(s) 94, 331, 682, 794, 864
Eco47I GGWCC 3 cut(s) 393, 801, 832
Eco53kI GAGCTC 1 cut(s) 792
EcoICRI GAGCTC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 5 cut(s) 94, 331, 682, 794, 864
Esp3I CGTCTC 2 cut(s) 373, 404
FaeI CATG 4 cut(s) 33, 620, 775, 808
FaiI YATR 9 cut(s) 31, 138, 197, 272, 284, 618, 696, 773, 806
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FaqI GGGAC 2 cut(s) 315, 379
FatI CATG 4 cut(s) 29, 616, 771, 804
FauI CCCGC 3 cut(s) 380, 690, 775
FblI GTMKAC 2 cut(s) 21, 576
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 3 cut(s) 236, 338, 830
FriOI GRGCYC 5 cut(s) 94, 331, 682, 794, 864
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 203
GlaI GCGC 4 cut(s) 496, 590, 605, 746
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 5 cut(s) 246, 329, 350, 776, 881
HapII CCGG 4 cut(s) 102, 214, 610, 764
HgaI GACGC 2 cut(s) 452, 736
HhaI GCGC 4 cut(s) 497, 591, 606, 747
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 4 cut(s) 33, 620, 775, 808
Hin6I GCGC 4 cut(s) 495, 589, 604, 745
HinP1I GCGC 4 cut(s) 495, 589, 604, 745
HincII GTYRAC 3 cut(s) 439, 490, 577
HindII GTYRAC 3 cut(s) 439, 490, 577
HinfI GANTC 1 cut(s) 578
HpaII CCGG 4 cut(s) 102, 214, 610, 764
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 4 cut(s) 22, 439, 490, 577
Hpy188I TCNGA 3 cut(s) 109, 522, 896
Hpy188III TCNNGA 5 cut(s) 203, 344, 463, 661, 812
Hpy8I GTNNAC 4 cut(s) 22, 439, 490, 577
Hpy99I CGWCG 3 cut(s) 446, 578, 752
HpyAV CCTTC 2 cut(s) 41, 397
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 4 cut(s) 33, 66, 86, 616
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 48, 764, 773, 878
HpyF3I CTNAG 5 cut(s) 147, 312, 480, 716, 863
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 4 cut(s) 33, 620, 775, 808
HspAI GCGC 4 cut(s) 495, 589, 604, 745
KroI GCCGGC 2 cut(s) 213, 763
KroNI GCCGGC 2 cut(s) 215, 765
Kzo9I GATC 6 cut(s) 308, 340, 383, 522, 673, 751
LmnI GCTCC 3 cut(s) 89, 596, 663
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 598, 686
MalI GATC 6 cut(s) 310, 342, 385, 524, 675, 753
MboI GATC 6 cut(s) 308, 340, 383, 522, 673, 751
MboII GAAGA 4 cut(s) 421, 541, 628, 683
MflI RGATCY 2 cut(s) 308, 340
MhlI GDGCHC 6 cut(s) 94, 256, 331, 682, 794, 864
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 5 cut(s) 163, 172, 231, 333, 514
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 1 cut(s) 572
Mox20I TGGCCA 1 cut(s) 776
MreI CGCCGGCG 1 cut(s) 213
MroNI GCCGGC 2 cut(s) 213, 763
MscI TGGCCA 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 776
MspA1I CMGCKG 2 cut(s) 36, 182
MspI CCGG 4 cut(s) 102, 214, 610, 764
MspR9I CCNGG 2 cut(s) 248, 611
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 6 cut(s) 495, 604, 685, 745, 747, 758
MwoI GCNNNNNNNGC 5 cut(s) 39, 48, 764, 773, 878
NaeI GCCGGC 2 cut(s) 215, 765
NciI CCSGG 1 cut(s) 611
NdeII GATC 6 cut(s) 308, 340, 383, 522, 673, 751
NgoMIV GCCGGC 2 cut(s) 213, 763
NlaIII CATG 4 cut(s) 33, 620, 775, 808
NlaIV GGNNCC 5 cut(s) 91, 253, 329, 342, 395
NmuCI GTSAC 2 cut(s) 598, 686
NspI RCATGY 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 682
PdiI GCCGGC 2 cut(s) 215, 765
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 794
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 5 cut(s) 91, 253, 329, 342, 395
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 5 cut(s) 327, 328, 393, 801, 832
PsuI RGATCY 2 cut(s) 308, 340
PvuII CAGCTG 2 cut(s) 36, 182
RsaI GTAC 4 cut(s) 298, 560, 653, 714
RsaNI GTAC 4 cut(s) 297, 559, 652, 713
SacI GAGCTC 1 cut(s) 794
SalI GTCGAC 1 cut(s) 575
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 6 cut(s) 308, 340, 383, 522, 673, 751
Sau96I GGNCC 5 cut(s) 327, 328, 393, 801, 832
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 248, 611
SduI GDGCHC 6 cut(s) 94, 256, 331, 682, 794, 864
SfcI CTRYAG 1 cut(s) 14
SgrAI CRCCGGYG 1 cut(s) 213
SinI GGWCC 3 cut(s) 393, 801, 832
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 5 cut(s) 163, 172, 231, 333, 514
SsiI CCGC 7 cut(s) 217, 373, 493, 594, 683, 782, 885
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 794
StyD4I CCNGG 2 cut(s) 246, 609
TaiI ACGT 1 cut(s) 576
TaqI TCGA 6 cut(s) 411, 576, 630, 642, 676, 750
TasI AATT 5 cut(s) 163, 172, 231, 333, 514
TatI WGTACW 2 cut(s) 558, 712
TscAI CASTG 3 cut(s) 68, 484, 871
TseFI GTSAC 2 cut(s) 598, 686
TseI GCWGC 1 cut(s) 33
Tsp45I GTSAC 2 cut(s) 598, 686
TspDTI ATGAA 3 cut(s) 17, 535, 628
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 3 cut(s) 68, 484, 871
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 3 cut(s) 393, 801, 832
XapI RAATTY 2 cut(s) 172, 333
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 33
XmiI GTMKAC 2 cut(s) 21, 576
XspI CTAG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.