pycom09g02550

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000349
Physical Location & Seq
Reverse (-)
1906126 .. 1908017
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02550.2

Sequence Viewer

Length: 924 bp
ATGCGATTTTGGACGATTCGGTCCTTGCTTCTCGATATGGTTTGTTTGGAGGACCAGATGATGAATGATTTGATATTGGGTTGCCCTAATTTGGAAGATTTGGAGCTTCAAAACTGTTGGGGACATCATCACTTGAAGATATGTAGCAAAAGGCTCAAGAGGCTGGCATTTGGGTTCTTCTATGATTCCGAAATCAGAGAGACTGTTTCGATTGATTGCCCAAATCTTTGTTCGATTAGCTTTGATTGCTGTAGCTTTTACAGGTTTTCCCTGAAGAATGCTGCGTCCCTGGTTTATTTTCGTGTCCAGATTGTGAACATAATGGAACGTTACTATGACTTGTGGAGCAGGACGGTTAAGCTAATTGAGCAAGCGCCTAATCTTAAGCATCTCGATGCACTAAATTGGTGGTTTAAGTTTCTGACATCAACGGACTCCTTCCCCGAAAGTTTTATGCTCCACAATCTGAAGTTCTTAGAGCTACAAACAGGATTTACCAAGCATGATCTCATTGGCATGGCTGCACTGCTTAAACATTGTCCCAATCTGGAGACAATGATTCTAGAATACCCTTTCAAGTCCGGGGAAGATGAGAGTTTACCAGAAGAGTTGTCGGATAAATCAGTTGAGTTTAGCATCCCAAGTCTCAAGCAAGTTACAATCAAACCGTATACAGGAACAGAAGATGAAGGTAATTTTGTGAAAATCTTGACTGAGCAAGGAGTTGTCCTAGAAAAGATTGTACTTGTTCCTGGCCAAGTTGGCGAGAACGGAATAGTTCTGATGCAGGTTCCCCCAATCGTTCTGTATAAAAAGGATTCACAAAGTTGGAAGTACTCTCTCCTCCGCAACGCCAGATATACTCTGAGCTTTAAATTGGGAATCCATCGGCTCAGCCAGTTTCCGTGTTATTTCTTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

308

Amino Acids

35.74

Weight (kDa)

5.94

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 778
AccI GTMKAC 1 cut(s) 671
AciI CCGC 1 cut(s) 847
AclI AACGTT 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 754
AcuI CTGAAG 2 cut(s) 293, 488
AfaI GTAC 2 cut(s) 744, 836
AfiI CCNNNNNNNGG 2 cut(s) 91, 674
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 110, 136, 577
AjnI CCWGG 2 cut(s) 288, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 6 cut(s) 106, 240, 255, 361, 481, 870
AluI AGCT 6 cut(s) 106, 240, 255, 361, 481, 870
Alw26I GTCTC 3 cut(s) 194, 545, 650
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 2 cut(s) 281, 521
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 21, 52
AsuC2I CCSGG 1 cut(s) 583
AvaII GGWCC 2 cut(s) 21, 52
BalI TGGCCA 1 cut(s) 756
BbvI GCAGC 2 cut(s) 268, 508
BccI CCATC 1 cut(s) 894
BciT130I CCWGG 2 cut(s) 290, 753
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 3 cut(s) 194, 545, 650
BfaI CTAG 2 cut(s) 563, 731
BfmI CTRYAG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 377
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 778
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 2 cut(s) 282, 522
BlpI GCTNAGC 1 cut(s) 893
BlsI GCNGC 2 cut(s) 283, 523
BmcAI AGTACT 1 cut(s) 836
Bme1390I CCNGG 3 cut(s) 290, 583, 753
Bme18I GGWCC 2 cut(s) 21, 52
BmgT120I GGNCC 2 cut(s) 21, 52
BmiI GGNNCC 1 cut(s) 792
BmrFI CCNGG 3 cut(s) 290, 583, 753
BmsI GCATC 4 cut(s) 385, 397, 645, 774
BpmI CTGGAG 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 140, 632
BpuMI CCSGG 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 288, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 674
Bse1I ACTGG 1 cut(s) 898
BseBI CCWGG 2 cut(s) 290, 753
BseDI CCNNGG 2 cut(s) 288, 582
BseGI GGATG 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 91, 674
BseMII CTCAG 3 cut(s) 705, 857, 907
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 2 cut(s) 268, 508
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 756
BsiSI CCGG 1 cut(s) 582
BslFI GGGAC 3 cut(s) 135, 271, 525
BslI CCNNNNNNNGG 2 cut(s) 91, 674
BsmAI GTCTC 3 cut(s) 194, 545, 650
BsmFI GGGAC 3 cut(s) 135, 271, 525
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 756
Bsp143I GATC 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 893
BspACI CCGC 1 cut(s) 847
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 3 cut(s) 706, 858, 906
BspLI GGNNCC 1 cut(s) 792
BspMI ACCTGC 1 cut(s) 778
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 1 cut(s) 898
BssECI CCNNGG 2 cut(s) 288, 582
BssMI GATC 1 cut(s) 505
BssNAI GTATAC 1 cut(s) 672
Bst1107I GTATAC 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 290, 753
Bst4CI ACNGT 4 cut(s) 116, 205, 355, 669
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 165, 372
BstDEI CTNAG 5 cut(s) 475, 714, 866, 893, 916
BstF5I GGATG 1 cut(s) 636
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 3 cut(s) 194, 545, 650
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 4 cut(s) 160, 246, 367, 762
BstNI CCWGG 2 cut(s) 290, 753
BstSCI CCNGG 3 cut(s) 288, 581, 751
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 268, 508
BstZ17I GTATAC 1 cut(s) 672
BsuRI GGCC 1 cut(s) 756
BtsCI GGATG 1 cut(s) 636
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 1 cut(s) 524
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 2 cut(s) 165, 372
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 21, 52
CseI GACGC 1 cut(s) 273
Csp6I GTAC 2 cut(s) 743, 835
CviAII CATG 2 cut(s) 503, 517
CviQI GTAC 2 cut(s) 743, 835
DdeI CTNAG 5 cut(s) 475, 714, 866, 893, 916
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
DraI TTTAAA 1 cut(s) 874
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 21, 52
Eco57I CTGAAG 2 cut(s) 293, 488
EcoRII CCWGG 2 cut(s) 288, 751
FaeI CATG 2 cut(s) 506, 520
FaqI GGGAC 3 cut(s) 135, 271, 525
FatI CATG 2 cut(s) 502, 516
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 2 cut(s) 282, 522
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 2 cut(s) 282, 522
FspBI CTAG 2 cut(s) 563, 731
GlaI GCGC 1 cut(s) 375
GluI GCNGC 2 cut(s) 282, 522
GsuI CTGGAG 1 cut(s) 569
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 1 cut(s) 756
HapII CCGG 1 cut(s) 582
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 376
Hin1II CATG 2 cut(s) 506, 520
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 6 cut(s) 16, 185, 434, 559, 818, 882
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 3 cut(s) 316, 599, 672
Hpy188I TCNGA 7 cut(s) 190, 197, 423, 468, 616, 783, 867
Hpy188III TCNNGA 7 cut(s) 32, 157, 307, 392, 548, 563, 709
Hpy8I GTNNAC 3 cut(s) 316, 599, 672
HpyAV CCTTC 2 cut(s) 448, 683
HpyCH4III ACNGT 4 cut(s) 116, 205, 355, 669
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 3 cut(s) 398, 524, 787
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 246, 367, 762
HpyF3I CTNAG 5 cut(s) 475, 714, 866, 893, 916
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 2 cut(s) 506, 520
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 3 cut(s) 103, 345, 462
Lsp1109I GCAGC 2 cut(s) 268, 508
LweI GCATC 4 cut(s) 385, 397, 645, 774
MaeI CTAG 2 cut(s) 563, 731
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 329, 655
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 7 cut(s) 107, 148, 169, 286, 599, 617, 695
MlsI TGGCCA 1 cut(s) 756
MluCI AATT 5 cut(s) 88, 363, 403, 694, 875
MluNI TGGCCA 1 cut(s) 756
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 594, 809
MnlI CCTC 3 cut(s) 43, 153, 854
Mox20I TGGCCA 1 cut(s) 756
MscI TGGCCA 1 cut(s) 756
MseI TTAA 5 cut(s) 357, 384, 414, 531, 873
MslI CAYNNNNRTG 2 cut(s) 393, 515
Msp20I TGGCCA 1 cut(s) 756
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 3 cut(s) 290, 583, 753
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 2 cut(s) 290, 753
MwoI GCNNNNNNNGC 4 cut(s) 160, 246, 367, 762
NciI CCSGG 1 cut(s) 583
NdeII GATC 1 cut(s) 505
NlaIII CATG 2 cut(s) 506, 520
NlaIV GGNNCC 1 cut(s) 792
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 5 cut(s) 16, 185, 559, 818, 882
PkrI GCNGC 2 cut(s) 283, 523
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp1406I AACGTT 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 288, 751
PspGI CCWGG 2 cut(s) 288, 751
PspN4I GGNNCC 1 cut(s) 792
PspPI GGNCC 2 cut(s) 21, 52
RsaI GTAC 2 cut(s) 744, 836
RsaNI GTAC 2 cut(s) 743, 835
RseI CAYNNNNRTG 2 cut(s) 393, 515
SaqAI TTAA 5 cut(s) 357, 384, 414, 531, 873
SatI GCNGC 2 cut(s) 282, 522
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 2 cut(s) 21, 52
ScaI AGTACT 1 cut(s) 836
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 3 cut(s) 290, 583, 753
SfaNI GCATC 4 cut(s) 385, 397, 645, 774
SfcI CTRYAG 1 cut(s) 250
SinI GGWCC 2 cut(s) 21, 52
SmiMI CAYNNNNRTG 2 cut(s) 393, 515
SmlI CTYRAG 3 cut(s) 155, 383, 647
SmoI CTYRAG 3 cut(s) 155, 383, 647
Sse9I AATT 5 cut(s) 88, 363, 403, 694, 875
SsiI CCGC 1 cut(s) 847
SspMI CTAG 2 cut(s) 563, 731
StyD4I CCNGG 3 cut(s) 288, 581, 751
TaaI ACNGT 4 cut(s) 116, 205, 355, 669
TaiI ACGT 1 cut(s) 331
TaqI TCGA 4 cut(s) 33, 209, 233, 393
TaqII GACCGA 1 cut(s) 9
TasI AATT 5 cut(s) 88, 363, 403, 694, 875
TatI WGTACW 2 cut(s) 742, 834
TfiI GAWTC 5 cut(s) 16, 185, 559, 818, 882
Tru1I TTAA 5 cut(s) 357, 384, 414, 531, 873
Tru9I TTAA 5 cut(s) 357, 384, 414, 531, 873
TscAI CASTG 1 cut(s) 531
TseI GCWGC 2 cut(s) 281, 521
TspDTI ATGAA 2 cut(s) 77, 702
TspGWI ACGGA 3 cut(s) 446, 786, 894
TspRI CASTG 1 cut(s) 531
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 21, 52
XbaI TCTAGA 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 2 cut(s) 563, 731
ZrmI AGTACT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.