Rroxscaffold_5G00351500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000349
Physical Location & Seq
Forward (+)
27688765 .. 27689847
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351500.1

Sequence Viewer

Length: 327 bp
ATGGGCAGCGATAATCAAGATTACGGGTCAATGTCGTCGGCGGATCATTTCGGTCTTGTTGAATCAAAGTCCATCCACAATCTTGTGTCCCGCCAATGGCGATCTCTGCGAGTCTGTCTCCCCCTCCTCGACCTCTCCTACCACCTCTTCTCGGTCAACGAATCCGAACCTCTTCCCTTAACAAGCCACCGCTTCACCGAGTTCGTTGACCGCTCTCTCATCCTCCTCACCAATTCTCCGATCAAAATCATCTGCATCTCCCGAGCGAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCTCTTCCTCTGTGTTGGGCGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

7.73

Isoelectric Point (pI)

59.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 285
AciI CCGC 5 cut(s) 41, 91, 190, 211, 283
AclWI GGATC 1 cut(s) 51
AfiI CCNNNNNNNGG 3 cut(s) 96, 151, 267
AgsI TTSAA 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 261
ApeKI GCWGC 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 187, 220
AvaI CYCGRG 1 cut(s) 261
BanII GRGCYC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 122
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 261
BmsI GCATC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BsaBI GATNNNNATC 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 151, 267
Bse8I GATNNNNATC 1 cut(s) 245
BseGI GGATG 2 cut(s) 72, 219
BseJI GATNNNNATC 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 96, 151, 267
BseRI GAGGAG 2 cut(s) 116, 215
BseXI GCAGC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 96, 151, 267
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 4 cut(s) 43, 101, 240, 273
BspACI CCGC 5 cut(s) 41, 91, 190, 211, 283
BspFNI CGCG 1 cut(s) 285
BspPI GGATC 1 cut(s) 51
BsrBI CCGCTC 1 cut(s) 213
BssMI GATC 4 cut(s) 43, 101, 240, 273
Bst6I CTCTTC 3 cut(s) 152, 177, 309
BstC8I GCNNGC 1 cut(s) 322
BstF5I GGATG 2 cut(s) 72, 219
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 4 cut(s) 46, 104, 243, 276
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 4 cut(s) 43, 101, 240, 273
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 18
BtsCI GGATG 2 cut(s) 72, 219
Cac8I GCNNGC 1 cut(s) 322
CviJI RGCY 2 cut(s) 186, 280
CviKI_1 RGCY 2 cut(s) 186, 280
DpnI GATC 4 cut(s) 45, 103, 242, 275
DpnII GATC 4 cut(s) 43, 101, 240, 273
Eam1104I CTCTTC 3 cut(s) 152, 177, 309
EarI CTCTTC 3 cut(s) 152, 177, 309
EciI GGCGGA 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 282
FaiI YATR 1 cut(s) 296
FaqI GGGAC 1 cut(s) 73
FauI CCCGC 2 cut(s) 98, 290
Fnu4HI GCNGC 1 cut(s) 7
FokI GGATG 2 cut(s) 59, 206
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 7
HincII GTYRAC 2 cut(s) 157, 208
HindII GTYRAC 2 cut(s) 157, 208
HinfI GANTC 3 cut(s) 62, 111, 161
HphI GGTGA 2 cut(s) 187, 220
Hpy166II GTNNAC 2 cut(s) 157, 208
Hpy188I TCNGA 2 cut(s) 166, 240
Hpy188III TCNNGA 2 cut(s) 17, 261
Hpy8I GTNNAC 2 cut(s) 157, 208
Hpy99I CGWCG 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Kzo9I GATC 4 cut(s) 43, 101, 240, 273
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 286
MalI GATC 4 cut(s) 45, 103, 242, 275
MbiI CCGCTC 1 cut(s) 213
MboI GATC 4 cut(s) 43, 101, 240, 273
MboII GAAGA 4 cut(s) 139, 164, 283, 296
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 232
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 9 cut(s) 134, 137, 143, 155, 180, 233, 236, 261, 318
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 179
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 4 cut(s) 43, 101, 240, 273
NmuCI GTSAC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 62, 161
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 7
Sau3AI GATC 4 cut(s) 43, 101, 240, 273
SchI GAGTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 282
SetI ASST 3 cut(s) 135, 147, 172
SfaNI GCATC 1 cut(s) 264
Sse9I AATT 1 cut(s) 232
SsiI CCGC 5 cut(s) 41, 91, 190, 211, 283
TaqI TCGA 2 cut(s) 129, 276
TaqII GACCGA 2 cut(s) 41, 142
TasI AATT 1 cut(s) 232
TfiI GAWTC 2 cut(s) 62, 161
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.