Rorug02G0485200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000349
Physical Location & Seq
Reverse (-)
61526410 .. 61527534
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485200.1

Sequence Viewer

Length: 1125 bp
ATGTTCTTCAAGCGAAATGGTGGTTTATTATTAGAACAACAATTATCGTCAGGTGAAGTTAATGTCGAGAAAATTAAATTGTTCAAATCACAAGAGTTAGAGAAGTCTACCGATAATTTTAATGTGGATAGAATTCTTGGCCAAGGAGGTCAAGGCACTGTATACAAAGGCATGTTGGAGGACGGGAAAATTGTTGCTGTGAAGAAGTCTAAAATAGTTGATGAAAGCCAACTTTCAGTATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTATTGGGTTGTTGTTTAGAGACAGAAGTTCCTCTTTTGGTTTATGAATTTATACCAAATGGAACCCTTTCCAAGTATATCACAGAGCAGGTTGAAGACTTTCCACTCACATGGAAAATGCGCTTACGAATTGCCACAGAAATTGCAGGAGCTCTCTCGTACTTGCACTATGCAGCTTCCTTTCCAATTTATCATAGAGATATCAAGTCTACAAACATACTCTTAGATGATAAATACAGAGCAAAAATTGCTGACTTTGGAACTTCGAGATCAATTGCTATTGACCAAACTCACCTGACCACATCACTTGTACATGGCACATTCGGTTACTTAGACCCTGAATACTTTCAGTCAAGCCAATTTACAGAAAAAAGTGATGTGTATAGTTTTGGGGTTGTTCTTGTTGAGATCTTAACAGGACAAAAACCAATTTCTTTTCTAAGGTCAGAGGATGAAGGCAAAAGTCTTGCCACATATTTCATTATGTCCATGCACAAAGATCGTCTATTTGAAATTGTTGATACTCAAGTTTTGAAGGAAGGATCGAAAGCAGATATCATGATAGTGGCAAACCTTGCAAAAAGATGTCTGAATTTGAACGGAAGGAAGCGCCCTACAATGAGAGAAGTCACAGCTGAGCTAGAAGTGATTCAAATGACAGAAAAGACTTCTAATGGCGAACAAAACTATGAAGAGGTTGAATTTGTCAGAATTGAATCAGTCGAGCCATGGGATATTGCTTCAAGTTCAACGAGAACAGGATCAGCTTTGGATGTTGGTCGGGTTTCATCATTCCATGAAATCGCCCTATTATCTTTCAAGTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

374

Amino Acids

42.24

Weight (kDa)

5.66

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 309 2e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 42 - 312 1.6e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
AccI GTMKAC 3 cut(s) 107, 162, 503
AclWI GGATC 2 cut(s) 844, 1063
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 4 cut(s) 132, 341, 886, 995
AfaI GTAC 2 cut(s) 455, 606
AluBI AGCT 5 cut(s) 446, 470, 929, 934, 1061
AluI AGCT 5 cut(s) 446, 470, 929, 934, 1061
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 844, 1063
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 4 cut(s) 132, 341, 886, 995
Asp700I GAANNNNTTC 4 cut(s) 361, 393, 639, 942
AspLEI GCGC 2 cut(s) 417, 906
AsuHPI GGTGA 2 cut(s) 65, 578
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 479
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 935
BfoI RGCGCY 1 cut(s) 907
BfuAI ACCTGC 1 cut(s) 373
BglII AGATCT 1 cut(s) 702
BisI GCNGC 1 cut(s) 468
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 142, 1022
BseDI CCNNGG 2 cut(s) 142, 1022
BseGI GGATG 2 cut(s) 751, 1072
BseMII CTCAG 1 cut(s) 921
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 5 cut(s) 563, 702, 793, 836, 1055
Bsp1720I GCTNAGC 1 cut(s) 930
Bsp19I CCATGG 1 cut(s) 1022
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 922
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 2 cut(s) 844, 1063
BsrGI TGTACA 1 cut(s) 604
BssECI CCNNGG 2 cut(s) 142, 1022
BssMI GATC 5 cut(s) 563, 702, 793, 836, 1055
BssNAI GTATAC 1 cut(s) 163
BssT1I CCWWGG 2 cut(s) 142, 1022
Bst1107I GTATAC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 981
BstAPI GCANNNNNTGC 2 cut(s) 542, 869
BstAUI TGTACA 1 cut(s) 604
BstDEI CTNAG 4 cut(s) 517, 625, 734, 930
BstDSI CCRYGG 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 751, 1072
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 2 cut(s) 417, 906
BstKTI GATC 5 cut(s) 566, 705, 796, 839, 1058
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 5 cut(s) 563, 702, 793, 836, 1055
BstMWI GCNNNNNNNGC 2 cut(s) 542, 869
BstNSI RCATGY 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 702
BstXI CCANNNNNNTGG 1 cut(s) 405
BstYI RGATCY 1 cut(s) 702
BstZ17I GTATAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 1022
BtsCI GGATG 2 cut(s) 751, 1072
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 373
CciI TCATGA 1 cut(s) 852
CfoI GCGC 2 cut(s) 417, 906
Csp6I GTAC 2 cut(s) 454, 605
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 583, 618
CviAII CATG 7 cut(s) 172, 405, 608, 784, 853, 1023, 1091
CviJI RGCY 9 cut(s) 141, 228, 446, 470, 651, 929, 934, 1021, 1061
CviKI_1 RGCY 9 cut(s) 141, 228, 446, 470, 651, 929, 934, 1021, 1061
CviQI GTAC 2 cut(s) 454, 605
DdeI CTNAG 4 cut(s) 517, 625, 734, 930
DpnI GATC 5 cut(s) 565, 704, 795, 838, 1057
DpnII GATC 5 cut(s) 563, 702, 793, 836, 1055
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 142, 1022
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 2 cut(s) 496, 850
Eco53kI GAGCTC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 132
EcoRV GATATC 2 cut(s) 496, 850
EcoT14I CCWWGG 2 cut(s) 142, 1022
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 2 cut(s) 142, 1022
FaeI CATG 7 cut(s) 175, 408, 611, 787, 856, 1026, 1094
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 7 cut(s) 171, 404, 607, 783, 852, 1022, 1090
FblI GTMKAC 3 cut(s) 107, 162, 503
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 2 cut(s) 758, 1079
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 1 cut(s) 935
GlaI GCGC 2 cut(s) 416, 905
GluI GCNGC 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 907
HaeIII GGCC 1 cut(s) 141
HhaI GCGC 2 cut(s) 417, 906
Hin1II CATG 7 cut(s) 175, 408, 611, 787, 856, 1026, 1094
Hin6I GCGC 2 cut(s) 415, 904
HinP1I GCGC 2 cut(s) 415, 904
HinfI GANTC 2 cut(s) 943, 1010
HphI GGTGA 2 cut(s) 65, 578
Hpy166II GTNNAC 3 cut(s) 108, 163, 504
Hpy188I TCNGA 3 cut(s) 742, 885, 1004
Hpy188III TCNNGA 3 cut(s) 67, 561, 853
Hpy8I GTNNAC 3 cut(s) 108, 163, 504
HpyAV CCTTC 4 cut(s) 743, 823, 827, 891
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 440, 460, 467, 787, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 869
HpyF3I CTNAG 4 cut(s) 517, 625, 734, 930
Hsp92II CATG 7 cut(s) 175, 408, 611, 787, 856, 1026, 1094
HspAI GCGC 2 cut(s) 415, 904
Kzo9I GATC 5 cut(s) 563, 702, 793, 836, 1055
LmnI GCTCC 1 cut(s) 443
LpnPI CCDG 7 cut(s) 36, 368, 426, 602, 645, 696, 1038
Lsp1109I GCAGC 1 cut(s) 479
MaeI CTAG 1 cut(s) 935
MaeIII GTNAC 2 cut(s) 620, 922
MalI GATC 5 cut(s) 565, 704, 795, 838, 1057
MboI GATC 5 cut(s) 563, 702, 793, 836, 1055
MboII GAAGA 3 cut(s) 214, 401, 998
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 140, 172, 244, 336, 736, 982
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 4 cut(s) 361, 393, 639, 942
MscI TGGCCA 1 cut(s) 141
MseI TTAA 5 cut(s) 60, 75, 120, 273, 707
MslI CAYNNNNRTG 3 cut(s) 282, 403, 857
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 929
MunI CAATTG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 542, 869
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 5 cut(s) 563, 702, 793, 836, 1055
NlaIII CATG 7 cut(s) 175, 408, 611, 787, 856, 1026, 1094
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 1 cut(s) 175
PagI TCATGA 1 cut(s) 852
PdmI GAANNNNTTC 4 cut(s) 361, 393, 639, 942
PfeI GAWTC 2 cut(s) 943, 1010
PkrI GCNGC 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 448
PspN4I GGNNCC 1 cut(s) 358
PsuI RGATCY 1 cut(s) 702
PvuII CAGCTG 1 cut(s) 929
RsaI GTAC 2 cut(s) 455, 606
RsaNI GTAC 2 cut(s) 454, 605
RseI CAYNNNNRTG 3 cut(s) 282, 403, 857
SacI GAGCTC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 60, 75, 120, 273, 707
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 5 cut(s) 563, 702, 793, 836, 1055
SduI GDGCHC 1 cut(s) 448
SmiMI CAYNNNNRTG 3 cut(s) 282, 403, 857
SmlI CTYRAG 1 cut(s) 819
SmoI CTYRAG 1 cut(s) 819
SspMI CTAG 1 cut(s) 935
SstI GAGCTC 1 cut(s) 448
StyI CCWWGG 2 cut(s) 142, 1022
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 66, 560, 839, 1017
TatI WGTACW 1 cut(s) 604
TfiI GAWTC 2 cut(s) 943, 1010
Tru1I TTAA 5 cut(s) 60, 75, 120, 273, 707
Tru9I TTAA 5 cut(s) 60, 75, 120, 273, 707
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 8 cut(s) 232, 237, 354, 762, 763, 999, 1071, 1107
TspGWI ACGGA 1 cut(s) 909
TspRI CASTG 1 cut(s) 163
XapI RAATTY 4 cut(s) 132, 341, 886, 995
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 3 cut(s) 107, 162, 503
XmnI GAANNNNTTC 4 cut(s) 361, 393, 639, 942
XspI CTAG 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.