Rh2CG534700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000349
Physical Location & Seq
Forward (+)
71089826 .. 71092829
3004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG534700.1

Sequence Viewer

Length: 1002 bp
ATGGAAGCAACGACGAGCAATGAAACGGTTCAAGCCCCATGCGCCACCAATCGAGCCTTAACCGACCTCCCTGAAGAAATCCTCATCCACATCCTCTCCTTCCTCCCTACCTTGTACGCCGTCCAGACCTCTCTCCTTTCCCGCCAATGCCGTTCCCTCTGGTCCCGCGTTCCCGCCCTGGACTTCTCCTACGACACCTTCCCCTCCGCCGAGCCCGACCCGACCCCCGACACCGACCCGACCCGCCTCTTCGCCGACTTCGTTGACCGCGCCCTTGTTCTCCGCCCCAACTCTCCGATCCGATCCTTCCGCCTCTCTTTCCTCTACTACCACCGCTACCGCTCCCACGTCGACTCCTGGCTCCGCTGCGCCGTCGCGCGCTTCCAGGCGCGTGAGCTCCACCTCGACCTCTACGTTGAGAAGAAGTATCAGAACGAAGTGAGCCTCGATCAGATGTACGACTTCCCTGTCTCCTTGCTGAAAAACTCGCGCGTGGAAGTCTTGAGGCTCACGCGCTGCGACCTCTGGTTGCCGGCGGACATGTCCGCCATGAACCTCTTCTCGCTGAGGACGGTTTTTCTGGAACGGATTGATATGACGGACCAGATGGTTGTGGATTTCATTTCGGGGTGTCCAAATCTGGAGGACCTGGAGTTTCACAACAGTGGTGGCATGGAGAATTTGAAGATACGTAGCGAAAAGCTTAAGAGGCTTGCGCTTGGGTACTTTTACGACTGTGATTCCAGGAACACGGTCGAGATTGATTGCCCAAACCTTTGGTTTTTGAAGTTTGATTGCTGTAGTTTTACCCAGTTTTGGCTTAAGAACGCGTCGTCTTTAGTTGAGTTTCATATTGCTATTGTTCACGTGGAGCAGTACTACTATTTGTGGAGTAAGGTTGTGAAGCTACTGGAGCAAGCGCCTCATGTGAAGCACCTTAATGTGCAGAATTGGTGGCTTAAGGTAAGTTTCTTGCTTTTGCTCGATCAATTGTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

333

Amino Acids

39.08

Weight (kDa)

5.74

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 57 6.8e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 101 - 316 3.7e-18 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 117 - 259 4.9e-11 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 351
AccII CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
AclWI GGATC 2 cut(s) 292, 297
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 1 cut(s) 93
AcvI CACGTG 1 cut(s) 868
AfaI GTAC 4 cut(s) 116, 458, 725, 878
AfiI CCNNNNNNNGG 1 cut(s) 816
AflII CTTAAG 3 cut(s) 704, 821, 959
AflIII ACRYGT 2 cut(s) 540, 828
AgsI TTSAA 3 cut(s) 32, 685, 787
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 5 cut(s) 177, 356, 384, 648, 743
AleI CACNNNNGTG 1 cut(s) 663
AluBI AGCT 3 cut(s) 397, 703, 907
AluI AGCT 3 cut(s) 397, 703, 907
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 2 cut(s) 292, 297
ApeKI GCWGC 2 cut(s) 366, 516
ApoI RAATTY 1 cut(s) 679
Asp700I GAANNNNTTC 2 cut(s) 27, 557
AspS9I GGNCC 3 cut(s) 162, 601, 646
AvaII GGWCC 3 cut(s) 162, 601, 646
BanII GRGCYC 2 cut(s) 216, 399
BbrPI CACGTG 1 cut(s) 868
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 566
BbvI GCAGC 2 cut(s) 353, 503
BccI CCATC 1 cut(s) 601
BceAI ACGGC 3 cut(s) 104, 135, 356
BciT130I CCWGG 5 cut(s) 179, 358, 386, 650, 745
BcoDI GTCTC 1 cut(s) 475
BfmI CTRYAG 1 cut(s) 799
BfoI RGCGCY 1 cut(s) 923
BfrI CTTAAG 3 cut(s) 704, 821, 959
BisI GCNGC 2 cut(s) 367, 517
BlsI GCNGC 2 cut(s) 368, 518
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 5 cut(s) 179, 358, 386, 650, 745
Bme18I GGWCC 3 cut(s) 162, 601, 646
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 3 cut(s) 162, 601, 646
BmiI GGNNCC 2 cut(s) 164, 362
BmrFI CCNGG 5 cut(s) 179, 358, 386, 650, 745
BmrI ACTGGG 1 cut(s) 805
BmuI ACTGGG 1 cut(s) 805
BpmI CTGGAG 3 cut(s) 662, 671, 932
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 523
BsaAI YACGTR 2 cut(s) 692, 868
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 816
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 2 cut(s) 811, 915
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 5 cut(s) 179, 358, 386, 650, 745
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 84, 90
BseLI CCNNNNNNNGG 1 cut(s) 816
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 2 cut(s) 811, 915
BsePI GCGCGC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 353, 503
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
Bsh1285I CGRYCG 1 cut(s) 756
BsiEI CGRYCG 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 816
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 216, 399
Bsp143I GATC 4 cut(s) 297, 302, 448, 985
BspCNI CTCAG 1 cut(s) 558
BspFNI CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
BspLI GGNNCC 2 cut(s) 164, 362
BspPI GGATC 2 cut(s) 292, 297
BspTI CTTAAG 3 cut(s) 704, 821, 959
BsrBI CCGCTC 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 2 cut(s) 811, 915
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 177
BssHII GCGCGC 1 cut(s) 377
BssMI GATC 4 cut(s) 297, 302, 448, 985
Bst2UI CCWGG 5 cut(s) 179, 358, 386, 650, 745
Bst4CI ACNGT 5 cut(s) 28, 574, 665, 737, 754
Bst6I CTCTTC 2 cut(s) 254, 563
BstAFI CTTAAG 3 cut(s) 704, 821, 959
BstBAI YACGTR 2 cut(s) 692, 868
BstC8I GCNNGC 4 cut(s) 379, 534, 714, 918
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 84, 90
BstFNI CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
BstH2I RGCGCY 1 cut(s) 923
BstKTI GATC 4 cut(s) 300, 305, 451, 988
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 4 cut(s) 297, 302, 448, 985
BstMCI CGRYCG 1 cut(s) 756
BstMWI GCNNNNNNNGC 3 cut(s) 41, 709, 913
BstNI CCWGG 5 cut(s) 179, 358, 386, 650, 745
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 5 cut(s) 177, 356, 384, 648, 743
BstSFI CTRYAG 1 cut(s) 799
BstSNI TACGTA 1 cut(s) 692
BstUI CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
BstV1I GCAGC 2 cut(s) 353, 503
BstXI CCANNNNNNTGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 2 cut(s) 84, 90
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 4 cut(s) 379, 534, 714, 918
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 162, 601, 646
CseI GACGC 1 cut(s) 819
Csp6I GTAC 4 cut(s) 115, 457, 724, 877
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviAII CATG 5 cut(s) 39, 541, 550, 673, 926
CviQI GTAC 4 cut(s) 115, 457, 724, 877
DdeI CTNAG 1 cut(s) 566
DpnI GATC 4 cut(s) 299, 304, 450, 987
DpnII GATC 4 cut(s) 297, 302, 448, 985
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 254, 563
EarI CTCTTC 2 cut(s) 254, 563
EciI GGCGGA 5 cut(s) 196, 272, 299, 535, 551
Ecl136II GAGCTC 1 cut(s) 397
Eco105I TACGTA 1 cut(s) 692
Eco24I GRGCYC 2 cut(s) 216, 399
Eco47I GGWCC 3 cut(s) 162, 601, 646
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 93
Eco72I CACGTG 1 cut(s) 868
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 5 cut(s) 177, 356, 384, 648, 743
EcoT38I GRGCYC 2 cut(s) 216, 399
FaeI CATG 5 cut(s) 42, 544, 553, 676, 929
FaiI YATR 7 cut(s) 40, 542, 551, 596, 674, 852, 927
FaqI GGGAC 1 cut(s) 148
FatI CATG 5 cut(s) 38, 540, 549, 672, 925
FauI CCCGC 4 cut(s) 149, 173, 181, 251
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 367, 517
FokI GGATG 2 cut(s) 71, 77
FriOI GRGCYC 2 cut(s) 216, 399
Fsp4HI GCNGC 2 cut(s) 367, 517
GluI GCNGC 2 cut(s) 367, 517
GsuI CTGGAG 3 cut(s) 662, 671, 932
HaeII RGCGCY 1 cut(s) 923
HapII CCGG 1 cut(s) 533
HgaI GACGC 1 cut(s) 819
Hin1II CATG 5 cut(s) 42, 544, 553, 676, 929
HincII GTYRAC 2 cut(s) 265, 352
HindII GTYRAC 2 cut(s) 265, 352
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 2 cut(s) 353, 740
HpaII CCGG 1 cut(s) 533
Hpy166II GTNNAC 3 cut(s) 265, 352, 865
Hpy188I TCNGA 4 cut(s) 297, 302, 432, 453
Hpy188III TCNNGA 5 cut(s) 124, 502, 581, 641, 757
Hpy8I GTNNAC 3 cut(s) 265, 352, 865
Hpy99I CGWCG 4 cut(s) 16, 353, 377, 835
HpyAV CCTTC 3 cut(s) 109, 208, 316
HpyCH4III ACNGT 5 cut(s) 28, 574, 665, 737, 754
HpyCH4IV ACGT 4 cut(s) 348, 414, 691, 867
HpyCH4V TGCA 1 cut(s) 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 709, 913
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 4 cut(s) 348, 414, 691, 867
Hsp92II CATG 5 cut(s) 42, 544, 553, 676, 929
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
Kzo9I GATC 4 cut(s) 297, 302, 448, 985
LmnI GCTCC 5 cut(s) 347, 366, 402, 871, 913
Lsp1109I GCAGC 2 cut(s) 353, 503
MaeII ACGT 4 cut(s) 348, 414, 691, 867
MalI GATC 4 cut(s) 299, 304, 450, 987
MbiI CCGCTC 1 cut(s) 342
MboI GATC 4 cut(s) 297, 302, 448, 985
MboII GAAGA 5 cut(s) 86, 241, 433, 550, 697
MfeI CAATTG 1 cut(s) 989
MhlI GDGCHC 2 cut(s) 216, 399
MluCI AATT 3 cut(s) 679, 949, 989
MluI ACGCGT 1 cut(s) 828
MlyI GAGTC 1 cut(s) 347
MroNI GCCGGC 1 cut(s) 532
MroXI GAANNNNTTC 2 cut(s) 27, 557
MseI TTAA 5 cut(s) 59, 705, 822, 939, 960
MslI CAYNNNNRTG 2 cut(s) 663, 939
MspA1I CMGCKG 1 cut(s) 366
MspCI CTTAAG 3 cut(s) 704, 821, 959
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 5 cut(s) 179, 358, 386, 650, 745
MunI CAATTG 1 cut(s) 989
MvaI CCWGG 5 cut(s) 179, 358, 386, 650, 745
MvnI CGCG 9 cut(s) 168, 270, 377, 379, 391, 490, 492, 514, 830
MwoI GCNNNNNNNGC 3 cut(s) 41, 709, 913
NaeI GCCGGC 1 cut(s) 534
NdeII GATC 4 cut(s) 297, 302, 448, 985
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 5 cut(s) 42, 544, 553, 676, 929
NlaIV GGNNCC 2 cut(s) 164, 362
NmeAIII GCCGAG 1 cut(s) 235
NspI RCATGY 1 cut(s) 544
OliI CACNNNNGTG 1 cut(s) 663
PauI GCGCGC 1 cut(s) 377
PciI ACATGT 1 cut(s) 540
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 411
PdiI GCCGGC 1 cut(s) 534
PdmI GAANNNNTTC 2 cut(s) 27, 557
PfeI GAWTC 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 743
PkrI GCNGC 2 cut(s) 368, 518
PleI GAGTC 1 cut(s) 347
PmaCI CACGTG 1 cut(s) 868
PmlI CACGTG 1 cut(s) 868
PpsI GAGTC 1 cut(s) 347
Ppu21I YACGTR 2 cut(s) 692, 868
PpuMI RGGWCCY 1 cut(s) 646
PscI ACATGT 1 cut(s) 540
Psp124BI GAGCTC 1 cut(s) 399
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 5 cut(s) 177, 356, 384, 648, 743
PspCI CACGTG 1 cut(s) 868
PspGI CCWGG 5 cut(s) 177, 356, 384, 648, 743
PspN4I GGNNCC 2 cut(s) 164, 362
PspPI GGNCC 3 cut(s) 162, 601, 646
PspPPI RGGWCCY 1 cut(s) 646
PteI GCGCGC 1 cut(s) 377
RsaI GTAC 4 cut(s) 116, 458, 725, 878
RsaNI GTAC 4 cut(s) 115, 457, 724, 877
RseI CAYNNNNRTG 2 cut(s) 663, 939
SacI GAGCTC 1 cut(s) 399
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 5 cut(s) 59, 705, 822, 939, 960
SatI GCNGC 2 cut(s) 367, 517
Sau3AI GATC 4 cut(s) 297, 302, 448, 985
Sau96I GGNCC 3 cut(s) 162, 601, 646
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 5 cut(s) 179, 358, 386, 650, 745
SduI GDGCHC 2 cut(s) 216, 399
SfcI CTRYAG 1 cut(s) 799
SinI GGWCC 3 cut(s) 162, 601, 646
SmiMI CAYNNNNRTG 2 cut(s) 663, 939
SmlI CTYRAG 4 cut(s) 502, 704, 821, 959
SmoI CTYRAG 4 cut(s) 502, 704, 821, 959
SnaBI TACGTA 1 cut(s) 692
Sse9I AATT 3 cut(s) 679, 949, 989
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 5 cut(s) 177, 356, 384, 648, 743
TaaI ACNGT 5 cut(s) 28, 574, 665, 737, 754
TaiI ACGT 4 cut(s) 351, 417, 694, 870
TaqI TCGA 6 cut(s) 52, 351, 405, 447, 756, 984
TasI AATT 3 cut(s) 679, 949, 989
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 5 cut(s) 59, 705, 822, 939, 960
Tru9I TTAA 5 cut(s) 59, 705, 822, 939, 960
TscAI CASTG 1 cut(s) 670
TseI GCWGC 2 cut(s) 366, 516
TspDTI ATGAA 4 cut(s) 36, 566, 610, 839
TspGWI ACGGA 2 cut(s) 601, 614
TspRI CASTG 1 cut(s) 670
Vha464I CTTAAG 3 cut(s) 704, 821, 959
VpaK11BI GGWCC 3 cut(s) 162, 601, 646
XapI RAATTY 1 cut(s) 679
XceI RCATGY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 2 cut(s) 27, 557
ZrmI AGTACT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.