RLG00000005223

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000349
Physical Location & Seq
Reverse (-)
65991897 .. 65993794
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005223

Sequence Viewer

Length: 558 bp
ATGGATTTTATATGTATTTTGGAGATTCATGAGGCCATCCACAACTCCCTCGTCTCCCGCCAATGGCGATCCTTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCGGTCAACGACGCCGAACCCCTCCCCATCACGAGCCACGGCTTCGCCGAGTTCGTCAATCGTGCTCTCATTCTCCGCCCCAATTCTCCAATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTTGACTCTTGGGGGCGCTCTGCCGTCAAGCGCTTCCAGGTGCGTGAGCCTGACCTCAATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCAAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGTTAAGAAACGGCTGTGTTGAGAGGCTCACGCGCGTCGATCTTGAGTTGCCGATGAGCATGGCCACGGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAAGATGTGGATTTGATGGACCAGATGTGGGAGCTTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

186

Amino Acids

21.97

Weight (kDa)

5.96

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 370, 430, 432
AciI CCGC 4 cut(s) 58, 193, 220, 368
AclWI GGATC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 459
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 245, 338
AfeI AGCGCT 1 cut(s) 290
AfiI CCNNNNNNNGG 3 cut(s) 63, 118, 526
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 477, 532
AluI AGCT 2 cut(s) 477, 532
Alw21I GWGCWC 2 cut(s) 184, 479
Alw26I GTCTC 2 cut(s) 58, 89
AlwI GGATC 1 cut(s) 63
Aor51HI AGCGCT 1 cut(s) 290
AoxI GGCC 2 cut(s) 33, 459
AspLEI GCGC 3 cut(s) 276, 291, 432
AspS9I GGNCC 3 cut(s) 78, 486, 517
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 3 cut(s) 78, 486, 517
BalI TGGCCA 1 cut(s) 461
BanII GRGCYC 2 cut(s) 367, 479
BauI CACGAG 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 184, 479
BccI CCATC 4 cut(s) 44, 152, 348, 508
BceAI ACGGC 3 cut(s) 172, 266, 424
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 58, 89
BfoI RGCGCY 2 cut(s) 277, 292
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 119, 296
Bme18I GGWCC 3 cut(s) 78, 486, 517
BmgT120I GGNCC 3 cut(s) 78, 486, 517
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 119, 296
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 154, 462
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 118, 526
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 154, 462
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 3 cut(s) 63, 118, 526
BseNI ACTGG 1 cut(s) 241
Bsh1236I CGCG 3 cut(s) 370, 430, 432
BshFI GGCC 2 cut(s) 35, 461
BsiHKAI GWGCWC 2 cut(s) 184, 479
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 63, 118, 526
BsmAI GTCTC 2 cut(s) 58, 89
BsmBI CGTCTC 2 cut(s) 58, 89
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 35, 461
Bsp1286I GDGCHC 3 cut(s) 184, 367, 479
Bsp143I GATC 3 cut(s) 68, 358, 436
BspACI CCGC 4 cut(s) 58, 193, 220, 368
BspANI GGCC 2 cut(s) 35, 461
BspFNI CGCG 3 cut(s) 370, 430, 432
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 154, 462
BssMI GATC 3 cut(s) 68, 358, 436
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 129
BstDSI CCRYGG 2 cut(s) 154, 462
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 3 cut(s) 370, 430, 432
BstH2I RGCGCY 2 cut(s) 277, 292
BstHHI GCGC 3 cut(s) 276, 291, 432
BstKTI GATC 3 cut(s) 71, 361, 439
BstMAI GTCTC 2 cut(s) 58, 89
BstMBI GATC 3 cut(s) 68, 358, 436
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 117, 294
BstUI CGCG 3 cut(s) 370, 430, 432
BsuRI GGCC 2 cut(s) 35, 461
BtgI CCRYGG 2 cut(s) 154, 462
BtsCI GGATG 1 cut(s) 36
CciI TCATGA 1 cut(s) 28
CfoI GCGC 3 cut(s) 276, 291, 432
Cfr13I GGNCC 3 cut(s) 78, 486, 517
CseI GACGC 2 cut(s) 137, 421
Csp6I GTAC 2 cut(s) 244, 337
CviAII CATG 3 cut(s) 29, 457, 490
CviQI GTAC 2 cut(s) 244, 337
DpnI GATC 3 cut(s) 70, 360, 438
DpnII GATC 3 cut(s) 68, 358, 436
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 2 cut(s) 182, 209
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 2 cut(s) 367, 479
Eco47I GGWCC 3 cut(s) 78, 486, 517
Eco47III AGCGCT 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 294
EcoT38I GRGCYC 2 cut(s) 367, 479
Esp3I CGTCTC 2 cut(s) 58, 89
FaeI CATG 3 cut(s) 32, 460, 493
FaiI YATR 7 cut(s) 11, 13, 30, 381, 458, 491, 556
FaqI GGGAC 1 cut(s) 64
FatI CATG 3 cut(s) 28, 456, 489
FauI CCCGC 2 cut(s) 65, 375
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 2 cut(s) 367, 479
GlaI GCGC 3 cut(s) 275, 290, 431
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 2 cut(s) 277, 292
HaeIII GGCC 2 cut(s) 35, 461
HapII CCGG 1 cut(s) 119
HgaI GACGC 2 cut(s) 137, 421
HhaI GCGC 3 cut(s) 276, 291, 432
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 32, 460, 493
Hin6I GCGC 3 cut(s) 274, 289, 430
HinP1I GCGC 3 cut(s) 274, 289, 430
HincII GTYRAC 2 cut(s) 124, 262
HindII GTYRAC 2 cut(s) 124, 262
HinfI GANTC 2 cut(s) 25, 263
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 124, 262
Hpy188III TCNNGA 5 cut(s) 29, 148, 346, 440, 497
Hpy8I GTNNAC 2 cut(s) 124, 262
Hpy99I CGWCG 2 cut(s) 131, 437
HpyAV CCTTC 3 cut(s) 82, 100, 226
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 32, 460, 493
HspAI GCGC 3 cut(s) 274, 289, 430
Kzo9I GATC 3 cut(s) 68, 358, 436
LmnI GCTCC 2 cut(s) 348, 529
LpnPI CCDG 8 cut(s) 61, 132, 254, 281, 308, 321, 331, 533
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 70, 360, 438
MboI GATC 3 cut(s) 68, 358, 436
MboII GAAGA 5 cut(s) 106, 226, 313, 368, 512
MhlI GDGCHC 3 cut(s) 184, 367, 479
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 2 cut(s) 199, 316
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 257
Mox20I TGGCCA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 461
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 119, 296
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 3 cut(s) 370, 430, 432
NciI CCSGG 1 cut(s) 119
NdeII GATC 3 cut(s) 68, 358, 436
NlaIII CATG 3 cut(s) 32, 460, 493
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 371
PagI TCATGA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 168, 367
PfeI GAWTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 3 cut(s) 78, 486, 517
RsaI GTAC 2 cut(s) 245, 338
RsaNI GTAC 2 cut(s) 244, 337
SacI GAGCTC 1 cut(s) 479
SaqAI TTAA 1 cut(s) 401
Sau3AI GATC 3 cut(s) 68, 358, 436
Sau96I GGNCC 3 cut(s) 78, 486, 517
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 119, 296
SduI GDGCHC 3 cut(s) 184, 367, 479
SetI ASST 9 cut(s) 114, 218, 254, 261, 300, 315, 479, 488, 534
SinI GGWCC 3 cut(s) 78, 486, 517
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 2 cut(s) 199, 316
SsiI CCGC 4 cut(s) 58, 193, 220, 368
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 2 cut(s) 117, 294
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 96, 327, 361, 435
TasI AATT 2 cut(s) 199, 316
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 17, 220, 313
VpaK11BI GGWCC 3 cut(s) 78, 486, 517
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.