RLG00000029542

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000349
Physical Location & Seq
Reverse (-)
40151283 .. 40152808
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029542

Sequence Viewer

Length: 573 bp
ATGAAAATGATATGGAATATTGGTTATCACCACATTCACCACCTTGAGGCCATCCATAACTCCCTCATCTCCCGCCAATGGCGATCCCTCTGGTCCCATCTCCCCTTCCTCGACTTCTCCTACCACCTTTTCTCGGTCAACGACGCCGAATCCCTCCCTATCACGAGCCACGGCTTCGCCGAGTTCTTTAACAACGCTCTCATTCTCCGCCCCAATTTTCCAATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCACTCTGCCGTCACACTCTTCCAGGTGCGTGAGCCTGACCTCGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCACGCACGTCGATCTAGCGTTGCCGGTGAGCATGGCCACTGTAGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGATGGACCAGATGTGGGAGCATTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

191

Amino Acids

22.54

Weight (kDa)

5.8

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 385
AciI CCGC 4 cut(s) 73, 208, 235, 383
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 260, 353
AfiI CCNNNNNNNGG 4 cut(s) 46, 78, 133, 541
AjiI CACGTC 2 cut(s) 274, 448
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 1 cut(s) 492
AluI AGCT 1 cut(s) 492
Alw21I GWGCWC 2 cut(s) 291, 494
Alw44I GTGCAC 1 cut(s) 287
AlwI GGATC 1 cut(s) 78
AoxI GGCC 2 cut(s) 48, 474
ApaLI GTGCAC 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 93, 501, 532
AsuHPI GGTGA 4 cut(s) 20, 29, 478, 508
AvaII GGWCC 3 cut(s) 93, 501, 532
BaeGI GKGCMC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 2 cut(s) 382, 494
BauI CACGAG 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 291, 494
BccI CCATC 4 cut(s) 59, 105, 363, 523
BceAI ACGGC 3 cut(s) 187, 281, 439
BciT130I CCWGG 1 cut(s) 311
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 480
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 3 cut(s) 93, 501, 532
BmgBI CACGTC 2 cut(s) 274, 448
BmgT120I GGNCC 3 cut(s) 93, 501, 532
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 382
BpuEI CTTGAG 2 cut(s) 65, 533
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 78, 133, 541
Bse118I RCCGGY 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 51, 523
BseLI CCNNNNNNNGG 4 cut(s) 46, 78, 133, 541
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 50, 476
BsiHKAI GWGCWC 2 cut(s) 291, 494
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 4 cut(s) 46, 78, 133, 541
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 50, 476
Bsp1286I GDGCHC 3 cut(s) 291, 382, 494
Bsp143I GATC 3 cut(s) 83, 373, 451
BspACI CCGC 4 cut(s) 73, 208, 235, 383
BspANI GGCC 2 cut(s) 50, 476
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 463
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 83, 373, 451
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 416
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 51, 523
BstFNI CGCG 1 cut(s) 385
BstKTI GATC 3 cut(s) 86, 376, 454
BstMBI GATC 3 cut(s) 83, 373, 451
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 385
BsuRI GGCC 2 cut(s) 50, 476
BtgI CCRYGG 1 cut(s) 169
BtrI CACGTC 2 cut(s) 274, 448
BtsCI GGATG 2 cut(s) 51, 523
BtsIMutI CAGTG 1 cut(s) 477
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 3 cut(s) 93, 501, 532
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 259, 352
CviAII CATG 2 cut(s) 472, 505
CviQI GTAC 2 cut(s) 259, 352
DdeI CTNAG 1 cut(s) 416
DpnI GATC 3 cut(s) 85, 375, 453
DpnII GATC 3 cut(s) 83, 373, 451
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 2 cut(s) 197, 224
Ecl136II GAGCTC 1 cut(s) 492
Eco24I GRGCYC 2 cut(s) 382, 494
Eco47I GGWCC 3 cut(s) 93, 501, 532
Eco53kI GAGCTC 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 382, 494
FaeI CATG 2 cut(s) 475, 508
FaiI YATR 6 cut(s) 13, 57, 396, 473, 506, 571
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 471, 504
FauI CCCGC 2 cut(s) 80, 390
FblI GTMKAC 1 cut(s) 276
FokI GGATG 2 cut(s) 38, 530
FriOI GRGCYC 2 cut(s) 382, 494
FspBI CTAG 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 382
HaeIII GGCC 2 cut(s) 50, 476
HapII CCGG 1 cut(s) 464
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 475, 508
HincII GTYRAC 2 cut(s) 139, 277
HindII GTYRAC 2 cut(s) 139, 277
HinfI GANTC 2 cut(s) 149, 278
HpaII CCGG 1 cut(s) 464
HphI GGTGA 4 cut(s) 20, 29, 478, 508
Hpy166II GTNNAC 3 cut(s) 139, 277, 289
Hpy188III TCNNGA 3 cut(s) 163, 361, 512
Hpy8I GTNNAC 3 cut(s) 139, 277, 289
Hpy99I CGWCG 3 cut(s) 146, 278, 452
HpyAV CCTTC 2 cut(s) 115, 241
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 2 cut(s) 273, 447
HpyCH4V TGCA 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 2 cut(s) 273, 447
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 475, 508
Kzo9I GATC 3 cut(s) 83, 373, 451
LmnI GCTCC 2 cut(s) 363, 544
LpnPI CCDG 8 cut(s) 76, 269, 296, 323, 336, 346, 477, 548
MaeI CTAG 1 cut(s) 455
MaeII ACGT 2 cut(s) 273, 447
MaeIII GTNAC 2 cut(s) 298, 386
MalI GATC 3 cut(s) 85, 375, 453
MboI GATC 3 cut(s) 83, 373, 451
MboII GAAGA 4 cut(s) 241, 298, 328, 383
MhlI GDGCHC 3 cut(s) 291, 382, 494
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 1 cut(s) 272
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 476
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 385
NdeII GATC 3 cut(s) 83, 373, 451
NlaIII CATG 2 cut(s) 475, 508
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 298, 386
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 382
PfeI GAWTC 1 cut(s) 149
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 3 cut(s) 93, 501, 532
RsaI GTAC 2 cut(s) 260, 353
RsaNI GTAC 2 cut(s) 259, 352
SacI GAGCTC 1 cut(s) 494
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 3 cut(s) 83, 373, 451
Sau96I GGNCC 3 cut(s) 93, 501, 532
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 3 cut(s) 291, 382, 494
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 3 cut(s) 93, 501, 532
SmlI CTYRAG 2 cut(s) 44, 512
SmoI CTYRAG 2 cut(s) 44, 512
Sse9I AATT 1 cut(s) 214
SsiI CCGC 4 cut(s) 73, 208, 235, 383
SspI AATATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 455
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 2 cut(s) 276, 450
TaqI TCGA 6 cut(s) 111, 276, 330, 342, 376, 450
TaqII GACCGA 1 cut(s) 124
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 2 cut(s) 298, 386
Tsp45I GTSAC 2 cut(s) 298, 386
TspDTI ATGAA 3 cut(s) 17, 235, 328
TspRI CASTG 1 cut(s) 484
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 3 cut(s) 93, 501, 532
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.