Prupe.3G224000_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000349
Physical Location & Seq
Forward (+)
22369812 .. 22376508
6697 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G224000.1

Sequence Viewer

Length: 357 bp
ATGATCCACAATCTCAACCACTTAGAGCTACGGACGGGGTTTACCCAATATGATCTGGTTGGCATGGCTGCACTGCTTAAGCTTTGTCCCAATCTCGAGACAAAGATGCTGGACTACCTTTTCAAGATAGAGGAAGATGAGACTTTATCAGAAGGGTTGTCAAGTAAACCAGTTGAATTGAGCATGCCAAGTCTCAAGCAAGTTTCGGTGACATCTTATACTGGAACAGAAGATGAAGTTAATTTTATGAAAATCTTGAGTACGCAAGGAGTTGCCCTAGAAAAGATTATACTTGTCCGTGGCCATGTTGGTGCAAAGTCGCGTGTTCAAATGGTTCTATATAGGAATGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

119

Amino Acids

13.29

Weight (kDa)

5.89

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 301
AfaI GTAC 1 cut(s) 262
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 3 cut(s) 124, 176, 329
AluBI AGCT 2 cut(s) 28, 82
AluI AGCT 2 cut(s) 28, 82
Alw26I GTCTC 3 cut(s) 92, 134, 197
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 303
BbvI GCAGC 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 92, 134, 197
BfaI CTAG 1 cut(s) 278
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 95
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 179, 277
BsaJI CCNNGG 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 170, 226
BseDI CCNNGG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 170, 226
BseXI GCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 72
BsmAI GTCTC 3 cut(s) 92, 134, 197
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 303
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 2 cut(s) 3, 52
BspANI GGCC 1 cut(s) 303
BspFNI CGCG 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 77
BsrI ACTGG 2 cut(s) 170, 226
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 2 cut(s) 3, 52
BstAFI CTTAAG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 2 cut(s) 6, 55
BstMAI GTCTC 3 cut(s) 92, 134, 197
BstMBI GATC 2 cut(s) 3, 52
BstNSI RCATGY 1 cut(s) 187
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 64, 184, 305
CviJI RGCY 4 cut(s) 28, 68, 82, 303
CviKI_1 RGCY 4 cut(s) 28, 68, 82, 303
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 22
DpnI GATC 2 cut(s) 5, 54
DpnII GATC 2 cut(s) 3, 52
EaeI YGGCCR 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 95
FaeI CATG 3 cut(s) 67, 187, 308
FaiI YATR 9 cut(s) 51, 65, 185, 219, 248, 290, 306, 340, 342
FaqI GGGAC 1 cut(s) 72
FatI CATG 3 cut(s) 63, 183, 304
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 278
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 3 cut(s) 67, 187, 308
HindIII AAGCTT 1 cut(s) 80
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 42, 167
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 95, 97, 124, 256
Hpy8I GTNNAC 2 cut(s) 42, 167
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 71, 314
HpyF3I CTNAG 1 cut(s) 22
Hsp92II CATG 3 cut(s) 67, 187, 308
Kzo9I GATC 2 cut(s) 3, 52
LpnPI CCDG 4 cut(s) 41, 95, 183, 207
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 5, 54
MboI GATC 2 cut(s) 3, 52
MboII GAAGA 2 cut(s) 146, 242
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 2 cut(s) 176, 241
MluNI TGGCCA 1 cut(s) 303
MnlI CCTC 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 2 cut(s) 78, 240
MslI CAYNNNNRTG 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 352
MvnI CGCG 1 cut(s) 322
NdeII GATC 2 cut(s) 3, 52
NlaIII CATG 3 cut(s) 67, 187, 308
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 1 cut(s) 187
PaeI GCATGC 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 95
PctI GAATGC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 70
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 78, 240
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 3, 52
SetI ASST 3 cut(s) 30, 84, 120
SfaNI GCATC 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 309
SmlI CTYRAG 4 cut(s) 77, 95, 194, 256
SmoI CTYRAG 4 cut(s) 77, 95, 194, 256
SphI GCATGC 1 cut(s) 187
Sse9I AATT 2 cut(s) 176, 241
SspMI CTAG 1 cut(s) 278
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 176, 241
Tru1I TTAA 2 cut(s) 78, 240
Tru9I TTAA 2 cut(s) 78, 240
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 249, 263
TspGWI ACGGA 2 cut(s) 46, 287
TspRI CASTG 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 77
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.