Rmu_co8177938.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8177938.1
OG0000349
Physical Location & Seq
Reverse (-)
1 .. 682
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8177938.1_g000001.1.cds

Sequence Viewer

Length: 671 bp
tcgacctcttctccctctccttcatctaccacgaccgcttcggcttccacgtcgactcctgggtccgctgcgccgtcacgctcctccacgcgcgtgagctccacctcgacttcttcatcgaccgggagtaccaccagaccgacgagaccttcaaccacaagtacgatttccctttcgccgtcctcagaaatggcgccgtccgggtgttgaagctcacgcgcgtcgacctcaccttgccggcgagcatggccgccatggggctcgtctctctgagctcaatgtatctcgacgaggtctacttgacggaccagatggtgtgtgatttgatatcgggttgtccgaatctcgaggaattggagctccagaactgttggggaatggagaagatgaagatatgtagtaaaaagctgaagaagctggcgtttgcttatatatatgattcggataacaggaacacgattgagattgattgcccgaatttgtgttcgataagctttgataactgtagttttacacagtttgtgctcaagtttgcgccggccctggttgagtttagtgtcagcattgtgaggataatggagcaggactatggtttgtggagcaggattgtgaggctacttgagcaagcgccttatgtgaagcagcttaatttgcaaaattggtggtttaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

223

Amino Acids

26.12

Weight (kDa)

5.51

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 193
AccI GTMKAC 3 cut(s) 53, 224, 296
AccII CGCG 4 cut(s) 91, 93, 219, 221
AciI CCGC 3 cut(s) 36, 66, 251
AcoI YGGCCR 1 cut(s) 248
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 430
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 130, 163
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 153, 210
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 58, 542
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 8 cut(s) 99, 213, 275, 360, 408, 417, 494, 645
AluI AGCT 8 cut(s) 99, 213, 275, 360, 408, 417, 494, 645
Alw21I GWGCWC 4 cut(s) 101, 277, 362, 527
Alw26I GTCTC 2 cut(s) 139, 270
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 2 cut(s) 248, 539
ApeKI GCWGC 2 cut(s) 68, 642
ApoI RAATTY 1 cut(s) 477
AspLEI GCGC 6 cut(s) 73, 93, 196, 221, 537, 630
AspS9I GGNCC 3 cut(s) 63, 306, 540
AsuC2I CCSGG 2 cut(s) 124, 202
AsuHPI GGTGA 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 2 cut(s) 63, 306
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 4 cut(s) 101, 263, 277, 362
Bbv12I GWGCWC 4 cut(s) 101, 277, 362, 527
BbvI GCAGC 2 cut(s) 55, 654
BccI CCATC 1 cut(s) 306
BceAI ACGGC 3 cut(s) 58, 163, 181
BciT130I CCWGG 2 cut(s) 60, 544
BcnI CCSGG 2 cut(s) 124, 202
BcoDI GTCTC 2 cut(s) 139, 270
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 2 cut(s) 197, 631
BisI GCNGC 3 cut(s) 69, 251, 643
BlsI GCNGC 3 cut(s) 70, 252, 644
Bme1390I CCNGG 4 cut(s) 60, 124, 202, 544
Bme18I GGWCC 2 cut(s) 63, 306
BmeT110I CYCGRG 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 63, 306, 540
BmiI GGNNCC 2 cut(s) 64, 195
BmrFI CCNGG 4 cut(s) 60, 124, 202, 544
BpmI CTGGAG 1 cut(s) 346
BpuEI CTTGAG 2 cut(s) 511, 640
BpuMI CCSGG 2 cut(s) 124, 202
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 59, 254, 542
BsaXI ACNNNNNCTCC 3 cut(s) 25, 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 2 cut(s) 237, 537
BseBI CCWGG 2 cut(s) 60, 544
BseDI CCNNGG 3 cut(s) 59, 254, 542
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 198, 262
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 55, 654
Bsh1236I CGCG 4 cut(s) 91, 93, 219, 221
Bsh1285I CGRYCG 2 cut(s) 36, 123
BshFI GGCC 2 cut(s) 250, 541
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 2 cut(s) 36, 123
BsiHKAI GWGCWC 4 cut(s) 101, 277, 362, 527
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 4 cut(s) 123, 201, 238, 538
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 139, 270
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 2 cut(s) 250, 541
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 5 cut(s) 101, 263, 277, 362, 527
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 3 cut(s) 36, 66, 251
BspANI GGCC 2 cut(s) 250, 541
BspCNI CTCAG 2 cut(s) 197, 263
BspFNI CGCG 4 cut(s) 91, 93, 219, 221
BspLI GGNNCC 2 cut(s) 64, 195
BspT107I GGYRCC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 2 cut(s) 237, 537
BssAI RCCGGY 2 cut(s) 237, 537
BssECI CCNNGG 3 cut(s) 59, 254, 542
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 2 cut(s) 60, 544
Bst4CI ACNGT 3 cut(s) 370, 505, 518
Bst6I CTCTTC 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 5 cut(s) 239, 243, 419, 539, 626
BstDEI CTNAG 2 cut(s) 184, 271
BstDSI CCRYGG 1 cut(s) 254
BstFNI CGCG 4 cut(s) 91, 93, 219, 221
BstH2I RGCGCY 2 cut(s) 197, 631
BstHHI GCGC 6 cut(s) 73, 93, 196, 221, 537, 630
BstMAI GTCTC 2 cut(s) 139, 270
BstMCI CGRYCG 2 cut(s) 36, 123
BstMWI GCNNNNNNNGC 4 cut(s) 247, 414, 621, 651
BstNI CCWGG 2 cut(s) 60, 544
BstSCI CCNGG 4 cut(s) 58, 122, 200, 542
BstSFI CTRYAG 1 cut(s) 504
BstUI CGCG 4 cut(s) 91, 93, 219, 221
BstV1I GCAGC 2 cut(s) 55, 654
BsuRI GGCC 2 cut(s) 250, 541
BtgI CCRYGG 1 cut(s) 254
BtrI CACGTC 1 cut(s) 51
Cac8I GCNNGC 5 cut(s) 239, 243, 419, 539, 626
CfoI GCGC 6 cut(s) 73, 93, 196, 221, 537, 630
Cfr10I RCCGGY 2 cut(s) 237, 537
Cfr13I GGNCC 3 cut(s) 63, 306, 540
CseI GACGC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 129, 162
CspCI CAANNNNNGTGG 1 cut(s) 643
CviAII CATG 2 cut(s) 246, 255
CviQI GTAC 2 cut(s) 129, 162
DdeI CTNAG 2 cut(s) 184, 271
DinI GGCGCC 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Ecl136II GAGCTC 3 cut(s) 99, 275, 360
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 4 cut(s) 101, 263, 277, 362
Eco31I GGTCTC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 63, 306
Eco53kI GAGCTC 3 cut(s) 99, 275, 360
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 346
EcoICRI GAGCTC 3 cut(s) 99, 275, 360
EcoRII CCWGG 2 cut(s) 58, 542
EcoRV GATATC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 4 cut(s) 101, 263, 277, 362
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 249, 258
FaiI YATR 9 cut(s) 247, 256, 396, 431, 433, 435, 437, 590, 635
FatI CATG 2 cut(s) 245, 254
FblI GTMKAC 3 cut(s) 53, 224, 296
Fnu4HI GCNGC 3 cut(s) 69, 251, 643
FriOI GRGCYC 4 cut(s) 101, 263, 277, 362
Fsp4HI GCNGC 3 cut(s) 69, 251, 643
GlaI GCGC 6 cut(s) 72, 92, 195, 220, 536, 629
GluI GCNGC 3 cut(s) 69, 251, 643
GsuI CTGGAG 1 cut(s) 346
HaeII RGCGCY 2 cut(s) 197, 631
HaeIII GGCC 2 cut(s) 250, 541
HapII CCGG 4 cut(s) 123, 201, 238, 538
HgaI GACGC 1 cut(s) 210
HhaI GCGC 6 cut(s) 73, 93, 196, 221, 537, 630
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 249, 258
Hin6I GCGC 6 cut(s) 71, 91, 194, 219, 535, 628
HinP1I GCGC 6 cut(s) 71, 91, 194, 219, 535, 628
HincII GTYRAC 2 cut(s) 54, 225
HindII GTYRAC 2 cut(s) 54, 225
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 3 cut(s) 55, 342, 439
HpaII CCGG 4 cut(s) 123, 201, 238, 538
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 3 cut(s) 54, 225, 297
Hpy188I TCNGA 4 cut(s) 187, 272, 341, 444
Hpy188III TCNNGA 3 cut(s) 286, 346, 363
Hpy8I GTNNAC 3 cut(s) 54, 225, 297
Hpy99I CGWCG 4 cut(s) 55, 145, 226, 292
HpyAV CCTTC 2 cut(s) 30, 159
HpyCH4III ACNGT 3 cut(s) 370, 505, 518
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 414, 621, 651
HpyF3I CTNAG 2 cut(s) 184, 271
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 249, 258
HspAI GCGC 6 cut(s) 71, 91, 194, 219, 535, 628
KasI GGCGCC 1 cut(s) 193
KroI GCCGGC 2 cut(s) 237, 537
KroNI GCCGGC 2 cut(s) 239, 539
LmnI GCTCC 6 cut(s) 86, 104, 357, 365, 579, 599
Lsp1109I GCAGC 2 cut(s) 55, 654
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 75
MboII GAAGA 4 cut(s) 105, 396, 402, 423
MhlI GDGCHC 5 cut(s) 101, 263, 277, 362, 527
MluCI AATT 4 cut(s) 352, 477, 648, 657
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 49
MroNI GCCGGC 2 cut(s) 237, 537
MseI TTAA 2 cut(s) 647, 668
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 4 cut(s) 123, 201, 238, 538
MspR9I CCNGG 4 cut(s) 60, 124, 202, 544
MvaI CCWGG 2 cut(s) 60, 544
MvnI CGCG 4 cut(s) 91, 93, 219, 221
MwoI GCNNNNNNNGC 4 cut(s) 247, 414, 621, 651
NaeI GCCGGC 2 cut(s) 239, 539
NarI GGCGCC 1 cut(s) 194
NciI CCSGG 2 cut(s) 124, 202
NcoI CCATGG 1 cut(s) 254
NgoMIV GCCGGC 2 cut(s) 237, 537
NlaIII CATG 2 cut(s) 249, 258
NlaIV GGNNCC 2 cut(s) 64, 195
NmuCI GTSAC 1 cut(s) 75
OliI CACNNNNGTG 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 337
PdiI GCCGGC 2 cut(s) 239, 539
PfeI GAWTC 2 cut(s) 342, 439
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 70, 252, 644
PleI GAGTC 1 cut(s) 49
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 3 cut(s) 101, 277, 362
Psp6I CCWGG 2 cut(s) 58, 542
PspGI CCWGG 2 cut(s) 58, 542
PspN4I GGNNCC 2 cut(s) 64, 195
PspPI GGNCC 3 cut(s) 63, 306, 540
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 2 cut(s) 130, 163
RsaNI GTAC 2 cut(s) 129, 162
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 3 cut(s) 101, 277, 362
SalI GTCGAC 2 cut(s) 52, 223
SaqAI TTAA 2 cut(s) 647, 668
SatI GCNGC 3 cut(s) 69, 251, 643
Sau96I GGNCC 3 cut(s) 63, 306, 540
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 4 cut(s) 60, 124, 202, 544
SduI GDGCHC 5 cut(s) 101, 263, 277, 362, 527
SfcI CTRYAG 1 cut(s) 504
SfoI GGCGCC 1 cut(s) 195
Sfr274I CTCGAG 1 cut(s) 346
SinI GGWCC 2 cut(s) 63, 306
SlaI CTCGAG 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 346, 526, 619
SmoI CTYRAG 3 cut(s) 346, 526, 619
Sse9I AATT 4 cut(s) 352, 477, 648, 657
SsiI CCGC 3 cut(s) 36, 66, 251
SspDI GGCGCC 1 cut(s) 193
SstI GAGCTC 3 cut(s) 101, 277, 362
StyD4I CCNGG 4 cut(s) 58, 122, 200, 542
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 370, 505, 518
TaiI ACGT 1 cut(s) 53
TaqI TCGA 8 cut(s) 2, 53, 107, 119, 224, 287, 347, 487
TaqII GACCGA 1 cut(s) 154
TasI AATT 4 cut(s) 352, 477, 648, 657
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 342, 439
Tru1I TTAA 2 cut(s) 647, 668
Tru9I TTAA 2 cut(s) 647, 668
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 2 cut(s) 68, 642
Tsp45I GTSAC 1 cut(s) 75
TspDTI ATGAA 3 cut(s) 12, 105, 403
TspGWI ACGGA 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 63, 306
XapI RAATTY 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 346
XmiI GTMKAC 3 cut(s) 53, 224, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.