Rh2BG607100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000349
Physical Location & Seq
Reverse (-)
82873560 .. 82876651
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG607100.1

Sequence Viewer

Length: 534 bp
ATGAGTGAGGCCATCCACAACTCCCTCGTCTCCTGCCAATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCGGTCAACGACGCCGAACCCCTCCCCGTCACGAGCCACAGCTTCCCCGAGTTAGTCAATCGCGCTCTCATTCTCCGCCCCAATTCTCAGATCAAAACTTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCGCTCCGCCGTCACGCACTTCCGGGTGCGTGAGCCTGACCTCAACTTCTTCATCTACAAAGAGTACCATCTCTGGAGCGAGGAAGATAGAGCCCTGCGTGGAGGCAGATTTCTCCGACTTTTGCTCACTGATTTCGTTAATTTCGAGGTCCAAGTCGCCGAGCTTCCGGTACTACAACGCCGTCTTTTGGTCCTTCTTGGCAATGATGGTGGTTGGTCTGAGAGAGCTCCTCCGCCTCTGGAGGCTTCTTGCGGTGGTTCTGGTCTTTCGAGGCGAGTAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

177

Amino Acids

20.68

Weight (kDa)

8.69

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 156
AciI CCGC 5 cut(s) 169, 196, 255, 482, 501
AclWI GGATC 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 3 cut(s) 221, 314, 420
AfiI CCNNNNNNNGG 3 cut(s) 39, 94, 436
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 3 cut(s) 135, 412, 476
AluI AGCT 3 cut(s) 135, 412, 476
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 2 cut(s) 34, 65
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 9
AspLEI GCGC 2 cut(s) 158, 252
AspS9I GGNCC 3 cut(s) 54, 397, 439
AsuC2I CCSGG 2 cut(s) 95, 272
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 3 cut(s) 54, 397, 439
BanII GRGCYC 2 cut(s) 343, 478
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 478
BccI CCATC 3 cut(s) 20, 324, 449
BceAI ACGGC 2 cut(s) 242, 414
BcnI CCSGG 2 cut(s) 95, 272
BcoDI GTCTC 2 cut(s) 34, 65
BmcAI AGTACT 1 cut(s) 221
Bme1390I CCNGG 2 cut(s) 95, 272
Bme18I GGWCC 3 cut(s) 54, 397, 439
BmeT110I CYCGRG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 54, 397, 439
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 95, 272
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 2 cut(s) 343, 509
BpuMI CCSGG 2 cut(s) 95, 272
BsaHI GRCGYC 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 94, 436
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 457
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 3 cut(s) 39, 94, 436
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 2 cut(s) 194, 459
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 478
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 3 cut(s) 95, 271, 416
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 3 cut(s) 39, 94, 436
BsmAI GTCTC 2 cut(s) 34, 65
BsmBI CGTCTC 2 cut(s) 34, 65
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 343, 478
Bsp143I GATC 2 cut(s) 44, 183
BspACI CCGC 5 cut(s) 169, 196, 255, 482, 501
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 193, 460
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 1 cut(s) 217
BssMI GATC 2 cut(s) 44, 183
BssNI GRCGYC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 180, 468
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 156
BstHHI GCGC 2 cut(s) 158, 252
BstKTI GATC 2 cut(s) 47, 186
BstMAI GTCTC 2 cut(s) 34, 65
BstMBI GATC 2 cut(s) 44, 183
BstSCI CCNGG 2 cut(s) 93, 270
BstUI CGCG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 11
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 375
CfoI GCGC 2 cut(s) 158, 252
Cfr13I GGNCC 3 cut(s) 54, 397, 439
CseI GACGC 1 cut(s) 113
Csp6I GTAC 3 cut(s) 220, 313, 419
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviJI RGCY 8 cut(s) 11, 129, 135, 283, 341, 412, 476, 494
CviKI_1 RGCY 8 cut(s) 11, 129, 135, 283, 341, 412, 476, 494
CviQI GTAC 3 cut(s) 220, 313, 419
DdeI CTNAG 2 cut(s) 180, 468
DpnI GATC 2 cut(s) 46, 185
DpnII GATC 2 cut(s) 44, 183
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 4 cut(s) 158, 185, 244, 471
Ecl136II GAGCTC 1 cut(s) 476
Eco24I GRGCYC 2 cut(s) 343, 478
Eco47I GGWCC 3 cut(s) 54, 397, 439
Eco53kI GAGCTC 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 476
EcoT38I GRGCYC 2 cut(s) 343, 478
Esp3I CGTCTC 2 cut(s) 34, 65
FaqI GGGAC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 237
FriOI GRGCYC 2 cut(s) 343, 478
GlaI GCGC 2 cut(s) 157, 251
GsuI CTGGAG 2 cut(s) 343, 509
HaeIII GGCC 1 cut(s) 11
HapII CCGG 3 cut(s) 95, 271, 416
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 158, 252
Hin1I GRCGYC 1 cut(s) 105
Hin6I GCGC 2 cut(s) 156, 250
HinP1I GCGC 2 cut(s) 156, 250
HincII GTYRAC 2 cut(s) 100, 238
HindII GTYRAC 2 cut(s) 100, 238
HinfI GANTC 1 cut(s) 239
HpaII CCGG 3 cut(s) 95, 271, 416
Hpy166II GTNNAC 2 cut(s) 100, 238
Hpy188I TCNGA 3 cut(s) 183, 365, 469
Hpy188III TCNNGA 3 cut(s) 124, 322, 488
Hpy8I GTNNAC 2 cut(s) 100, 238
Hpy99I CGWCG 2 cut(s) 107, 239
HpyAV CCTTC 2 cut(s) 76, 452
HpyCH4IV ACGT 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 180, 468
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 105
HspAI GCGC 2 cut(s) 156, 250
Kzo9I GATC 2 cut(s) 44, 183
LmnI GCTCC 3 cut(s) 257, 324, 481
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 121, 259
MalI GATC 2 cut(s) 46, 185
MboI GATC 2 cut(s) 44, 183
MboII GAAGA 4 cut(s) 82, 202, 289, 344
MhlI GDGCHC 2 cut(s) 343, 478
MluCI AATT 2 cut(s) 175, 388
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 388
MseI TTAA 1 cut(s) 387
MspI CCGG 3 cut(s) 95, 271, 416
MspR9I CCNGG 2 cut(s) 95, 272
MvnI CGCG 1 cut(s) 156
NciI CCSGG 2 cut(s) 95, 272
NdeII GATC 2 cut(s) 44, 183
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 121, 259
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 3 cut(s) 54, 397, 439
RsaI GTAC 3 cut(s) 221, 314, 420
RsaNI GTAC 3 cut(s) 220, 313, 419
SacI GAGCTC 1 cut(s) 478
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 387
Sau3AI GATC 2 cut(s) 44, 183
Sau96I GGNCC 3 cut(s) 54, 397, 439
ScaI AGTACT 1 cut(s) 221
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 95, 272
SduI GDGCHC 2 cut(s) 343, 478
SetI ASST 9 cut(s) 90, 137, 230, 237, 291, 399, 414, 478, 533
SinI GGWCC 3 cut(s) 54, 397, 439
Sse9I AATT 2 cut(s) 175, 388
SsiI CCGC 5 cut(s) 169, 196, 255, 482, 501
SstI GAGCTC 1 cut(s) 478
StyD4I CCNGG 2 cut(s) 93, 270
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 72, 237, 393, 518
TasI AATT 2 cut(s) 175, 388
TatI WGTACW 1 cut(s) 219
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 121, 259
Tsp45I GTSAC 2 cut(s) 121, 259
TspDTI ATGAA 2 cut(s) 196, 289
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 3 cut(s) 54, 397, 439
XmiI GTMKAC 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.