Rorug02G0485600

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
61551535 .. 61552674
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485600.1

Sequence Viewer

Length: 1140 bp
ATGTTCTTCAAGCGAAATGGTGGTTTGTTATTAGAACAACAATTATCGTCAGGTGAAGTTAATGTTGAGAAAATCAAATTGTTCAAATCACAGGAGTTAGAGAAGTCTACTGATAATTTTAATGTGGATAGAATTCTTGGCCAAGGAGGTCAAGGTACTGTATACAAAGGCATGTTGGAGGACGGGAGAATTGTTGCTGTGAAGAAGTCTAAAATAGTTGATGAAAGCCAACTTTCAAAATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTATTGGGTTGTTGTTTAGAGACAGAAGTTCCTCTTTTGGTTTATGAATTTATACCAAATGGAACCCTTTCCAAGTATATCACAGAGCAAGTTGAAGACTTCACACTCACATGGAAAATGCGTTTACGAATTGCCACAGAAATTGCAGGGGCTCTCTCGTACTTACACTATACAGCTTCTTTTCCAATTTATCATAGAGATATCAAGTCTACAAACATACTCTTAGATGATAAGTACAGAGCAAAAGTTGCTGACTTTGGAACTTCGAGATCAATTGCTATTGACCAAACTCACCTGACCACATCACTTGTACATGGCACATTCGGTTACTTGGACCCTGAATACTTTCAGTCAAGCCAATTTACGGAGAAAAGTGATGTGTATAGCTTTGGGGTTGTTCTTGTTGAGCTCTTAACAGGACAAAAACCAATTTCTTTTCTAAGGTCAGAGGATGAAGGCAAAAGTCTTGCCACATATTTCATTATTTCCATGCACAAAGATTGTTTATTTGAAATTGTTGATGCTCAAGTTTTGAGGGAAGGATCGAAAGCAGATATTCTAATAGTGGCAAACCTTGCAAGAAGATGTCTGAATTTGAACGGAAGGAAGCGCCCTACAATGAGAGAGGTCACATCAGAGCTAGAAGGGATTCAAATGACAGAAAAGACTTCTAATGGCGAACAAAACTATGAAGAGGTTGAATTTATCAGAACTGAATCAGTCGAGCCATGGGATATTGCTTCGAGTTCAACGGGAACAAGATCAACTTTGGATGTTGGTCGGGTTTCATCATCCATGAAATCCCACTATTATCTTTCAAGTCAAGGTGTGAAAAATGTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

379

Amino Acids

42.73

Weight (kDa)

5.77

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 40 - 309 7.1e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 42 - 312 1.5e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 107, 162, 503
AclWI GGATC 1 cut(s) 844
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 5 cut(s) 132, 239, 341, 886, 995
AfaI GTAC 4 cut(s) 157, 455, 530, 606
AfiI CCNNNNNNNGG 1 cut(s) 658
AluBI AGCT 4 cut(s) 470, 681, 703, 934
AluI AGCT 4 cut(s) 470, 681, 703, 934
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 844
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 5 cut(s) 132, 239, 341, 886, 995
Asp700I GAANNNNTTC 3 cut(s) 361, 639, 942
AspLEI GCGC 1 cut(s) 906
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 2 cut(s) 65, 578
AvaII GGWCC 1 cut(s) 628
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 2 cut(s) 448, 705
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 935
BfoI RGCGCY 1 cut(s) 907
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 358, 630
BmsI GCATC 1 cut(s) 805
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 142, 1022
Bsc4I CCNNNNNNNGG 1 cut(s) 658
BseDI CCNNGG 2 cut(s) 142, 1022
BseGI GGATG 3 cut(s) 751, 1072, 1085
BseLI CCNNNNNNNGG 1 cut(s) 658
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 705
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 448, 705
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 3 cut(s) 563, 836, 1055
Bsp19I CCATGG 1 cut(s) 1022
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 358, 630
BspPI GGATC 1 cut(s) 844
BsrGI TGTACA 1 cut(s) 604
BssECI CCNNGG 2 cut(s) 142, 1022
BssMI GATC 3 cut(s) 563, 836, 1055
BssNAI GTATAC 1 cut(s) 163
BssT1I CCWWGG 2 cut(s) 142, 1022
Bst1107I GTATAC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 981
BstAPI GCANNNNNTGC 2 cut(s) 542, 869
BstAUI TGTACA 1 cut(s) 604
BstDEI CTNAG 3 cut(s) 517, 734, 1137
BstDSI CCRYGG 1 cut(s) 1022
BstF5I GGATG 3 cut(s) 751, 1072, 1085
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 1 cut(s) 906
BstKTI GATC 3 cut(s) 566, 839, 1058
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 3 cut(s) 563, 836, 1055
BstMWI GCNNNNNNNGC 2 cut(s) 542, 869
BstNSI RCATGY 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 396
BstZ17I GTATAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 1022
BtsCI GGATG 3 cut(s) 751, 1072, 1085
CfoI GCGC 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 4 cut(s) 156, 454, 529, 605
CspCI CAANNNNNGTGG 4 cut(s) 418, 453, 583, 618
CviAII CATG 6 cut(s) 172, 405, 608, 784, 1023, 1090
CviJI RGCY 9 cut(s) 141, 228, 446, 470, 651, 681, 703, 934, 1021
CviKI_1 RGCY 9 cut(s) 141, 228, 446, 470, 651, 681, 703, 934, 1021
CviQI GTAC 4 cut(s) 156, 454, 529, 605
DdeI CTNAG 3 cut(s) 517, 734, 1137
DpnI GATC 3 cut(s) 565, 838, 1057
DpnII GATC 3 cut(s) 563, 836, 1055
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 142, 1022
Eco24I GRGCYC 2 cut(s) 448, 705
Eco32I GATATC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 703
EcoICRI GAGCTC 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 132
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 142, 1022
EcoT38I GRGCYC 2 cut(s) 448, 705
ErhI CCWWGG 2 cut(s) 142, 1022
FaeI CATG 6 cut(s) 175, 408, 611, 787, 1026, 1093
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 1045, 1077
FatI CATG 6 cut(s) 171, 404, 607, 783, 1022, 1089
FblI GTMKAC 3 cut(s) 107, 162, 503
FokI GGATG 3 cut(s) 758, 1072, 1079
FriOI GRGCYC 2 cut(s) 448, 705
FspBI CTAG 1 cut(s) 935
GlaI GCGC 1 cut(s) 905
HaeII RGCGCY 1 cut(s) 907
HaeIII GGCC 1 cut(s) 141
HhaI GCGC 1 cut(s) 906
Hin1II CATG 6 cut(s) 175, 408, 611, 787, 1026, 1093
Hin6I GCGC 1 cut(s) 904
HinP1I GCGC 1 cut(s) 904
HinfI GANTC 2 cut(s) 943, 1010
HphI GGTGA 2 cut(s) 65, 578
Hpy166II GTNNAC 4 cut(s) 108, 163, 419, 504
Hpy188I TCNGA 4 cut(s) 742, 885, 931, 1004
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 4 cut(s) 108, 163, 419, 504
HpyAV CCTTC 4 cut(s) 743, 827, 891, 932
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 440, 787, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 542, 869
HpyF3I CTNAG 3 cut(s) 517, 734, 1137
Hsp92II CATG 6 cut(s) 175, 408, 611, 787, 1026, 1093
HspAI GCGC 1 cut(s) 904
Kzo9I GATC 3 cut(s) 563, 836, 1055
LpnPI CCDG 6 cut(s) 36, 77, 426, 602, 645, 696
LweI GCATC 1 cut(s) 805
MaeI CTAG 1 cut(s) 935
MaeIII GTNAC 2 cut(s) 620, 922
MalI GATC 3 cut(s) 565, 838, 1057
MboI GATC 3 cut(s) 563, 836, 1055
MboII GAAGA 4 cut(s) 214, 401, 888, 998
MfeI CAATTG 1 cut(s) 567
MhlI GDGCHC 2 cut(s) 448, 705
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 8 cut(s) 140, 172, 244, 336, 736, 822, 913, 982
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 3 cut(s) 361, 639, 942
MscI TGGCCA 1 cut(s) 141
MseI TTAA 4 cut(s) 60, 120, 273, 707
MslI CAYNNNNRTG 2 cut(s) 282, 403
Msp20I TGGCCA 1 cut(s) 141
MunI CAATTG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 542, 869
NcoI CCATGG 1 cut(s) 1022
NdeII GATC 3 cut(s) 563, 836, 1055
NlaIII CATG 6 cut(s) 175, 408, 611, 787, 1026, 1093
NlaIV GGNNCC 2 cut(s) 358, 630
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 1 cut(s) 175
PdmI GAANNNNTTC 3 cut(s) 361, 639, 942
PfeI GAWTC 2 cut(s) 943, 1010
Psp124BI GAGCTC 1 cut(s) 705
PspN4I GGNNCC 2 cut(s) 358, 630
PspPI GGNCC 1 cut(s) 628
RsaI GTAC 4 cut(s) 157, 455, 530, 606
RsaNI GTAC 4 cut(s) 156, 454, 529, 605
RseI CAYNNNNRTG 2 cut(s) 282, 403
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 4 cut(s) 60, 120, 273, 707
Sau3AI GATC 3 cut(s) 563, 836, 1055
Sau96I GGNCC 1 cut(s) 628
SduI GDGCHC 2 cut(s) 448, 705
SfaNI GCATC 1 cut(s) 805
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 282, 403
SmlI CTYRAG 1 cut(s) 819
SmoI CTYRAG 1 cut(s) 819
SspMI CTAG 1 cut(s) 935
SstI GAGCTC 1 cut(s) 705
StyI CCWWGG 2 cut(s) 142, 1022
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 560, 839, 1017, 1037
TatI WGTACW 2 cut(s) 528, 604
TfiI GAWTC 2 cut(s) 943, 1010
Tru1I TTAA 4 cut(s) 60, 120, 273, 707
Tru9I TTAA 4 cut(s) 60, 120, 273, 707
TseFI GTSAC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 8 cut(s) 232, 237, 354, 762, 763, 999, 1071, 1106
TspGWI ACGGA 2 cut(s) 674, 909
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 5 cut(s) 132, 239, 341, 886, 995
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 3 cut(s) 107, 162, 503
XmnI GAANNNNTTC 3 cut(s) 361, 639, 942
XspI CTAG 1 cut(s) 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.