Rmu_sc0003465.1_g000005

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0000349
Physical Location & Seq
Reverse (-)
35753 .. 36004
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003465.1_g000005.1.cds

Sequence Viewer

Length: 252 bp
atgatcaccattaagccttttggaaccgccgacggcctctgcccaagacccacgtcagaagccattctcttcaccacaaactataatctcccagaaatccatgacatggaagaagccagtactgaaattcaaaccccaaattcaaaccagtatcaaaacctaaacgatctacctgaagaaatcctaatccaaatcctcgctttaattccggccttggaggccgtccagaactctctcatctcccgccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

4.12

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AciI CCGC 2 cut(s) 27, 244
AcsI RAATTY 2 cut(s) 126, 139
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 131, 144
AjiI CACGTC 1 cut(s) 54
AoxI GGCC 3 cut(s) 34, 210, 219
ApoI RAATTY 2 cut(s) 126, 139
Asp700I GAANNNNTTC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 64
BceAI ACGGC 2 cut(s) 49, 206
BclI TGATCA 1 cut(s) 3
BglI GCCNNNNNGGC 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 25
BoxI GACNNNNGTC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 117, 148
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 117, 148
BshFI GGCC 3 cut(s) 36, 212, 221
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 3 cut(s) 36, 212, 221
Bsp143I GATC 2 cut(s) 3, 166
BspACI CCGC 2 cut(s) 27, 244
BspANI GGCC 3 cut(s) 36, 212, 221
BspLI GGNNCC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 117, 148
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 3, 166
BssT1I CCWWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 74
BstKTI GATC 2 cut(s) 6, 169
BstMBI GATC 2 cut(s) 3, 166
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 36, 212, 221
BtrI CACGTC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 120
CviAII CATG 2 cut(s) 101, 106
CviJI RGCY 6 cut(s) 16, 36, 62, 116, 212, 221
CviKI_1 RGCY 6 cut(s) 16, 36, 62, 116, 212, 221
CviQI GTAC 1 cut(s) 120
DpnI GATC 2 cut(s) 5, 168
DpnII GATC 2 cut(s) 3, 166
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 104, 109
FaiI YATR 3 cut(s) 84, 102, 107
FatI CATG 2 cut(s) 100, 105
FbaI TGATCA 1 cut(s) 3
HaeIII GGCC 3 cut(s) 36, 212, 221
HapII CCGG 1 cut(s) 209
Hin1II CATG 2 cut(s) 104, 109
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 104, 109
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 166
LpnPI CCDG 6 cut(s) 105, 130, 161, 186, 222, 239
MaeII ACGT 1 cut(s) 53
MalI GATC 2 cut(s) 5, 168
MboI GATC 2 cut(s) 3, 166
MboII GAAGA 3 cut(s) 61, 122, 188
MluCI AATT 3 cut(s) 126, 139, 204
MnlI CCTC 3 cut(s) 47, 206, 211
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 12, 203
MspI CCGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 3, 166
NlaIII CATG 2 cut(s) 104, 109
NlaIV GGNNCC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 12, 203
Sau3AI GATC 2 cut(s) 3, 166
ScaI AGTACT 1 cut(s) 121
SetI ASST 3 cut(s) 56, 162, 175
SfiI GGCCNNNNNGGCC 1 cut(s) 218
Sse9I AATT 3 cut(s) 126, 139, 204
SsiI CCGC 2 cut(s) 27, 244
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 56
TasI AATT 3 cut(s) 126, 139, 204
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 2 cut(s) 12, 203
Tru9I TTAA 2 cut(s) 12, 203
Van91I CCANNNNNTGG 1 cut(s) 106
XapI RAATTY 2 cut(s) 126, 139
XmnI GAANNNNTTC 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.