RLG00000035034

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000349
Physical Location & Seq
Forward (+)
59608147 .. 59608635
489 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035034

Sequence Viewer

Length: 489 bp
ATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCGGTCAACGACGCCGAACCCCTCCCCATCACGAGCCACGACTTCGGCGAGTTCGTCAACCGCGCTCTCATTCTCCACCCCAATTCTCCAATCAAAACCTTCCGCCTGTCTTTCATCTTCTACCAGTATTACACCTCCCACGTCGACTCTTGGGTGCCGTCACGCACTTCCAGGCGCGTGAGCCTGACCTCGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGGCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGTTGTGTTGAGAGGCTCACGCGCGTCGATCTCGCATTGCCGGCGAGCATGGCCACGGTGGGTGTGAGCTTTGTGAGGTCCATGTTTCTTGAGGATGTGAATTTGATGGACCAGATGTGGGAGCGTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

163

Amino Acids

18.87

Weight (kDa)

9.97

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 199
AccII CGCG 5 cut(s) 118, 232, 301, 361, 363
AciI CCGC 3 cut(s) 116, 158, 299
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 56, 457
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 408
AluI AGCT 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 2 cut(s) 295, 390
ApoI RAATTY 1 cut(s) 439
AspLEI GCGC 3 cut(s) 120, 232, 363
AspS9I GGNCC 4 cut(s) 16, 296, 417, 448
AsuC2I CCSGG 1 cut(s) 57
AvaII GGWCC 3 cut(s) 16, 417, 448
BalI TGGCCA 1 cut(s) 392
BanI GGYRCC 1 cut(s) 209
BauI CACGAG 1 cut(s) 86
BccI CCATC 3 cut(s) 90, 279, 439
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 57, 227
Bme18I GGWCC 3 cut(s) 16, 417, 448
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 4 cut(s) 16, 296, 417, 448
BmiI GGNNCC 2 cut(s) 18, 211
BmrFI CCNGG 2 cut(s) 57, 227
BpmI CTGGAG 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 457
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 2 cut(s) 56, 457
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 179
Bsh1236I CGCG 5 cut(s) 118, 232, 301, 361, 363
BshFI GGCC 2 cut(s) 297, 392
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 57, 380
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 2 cut(s) 56, 457
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 2 cut(s) 297, 392
Bsp143I GATC 3 cut(s) 6, 289, 367
BspACI CCGC 3 cut(s) 116, 158, 299
BspANI GGCC 2 cut(s) 297, 392
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 5 cut(s) 118, 232, 301, 361, 363
BspLI GGNNCC 2 cut(s) 18, 211
BspT107I GGYRCC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 6, 289, 367
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 341, 397
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 3 cut(s) 299, 381, 385
BstDEI CTNAG 1 cut(s) 332
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 5 cut(s) 118, 232, 301, 361, 363
BstHHI GCGC 3 cut(s) 120, 232, 363
BstKTI GATC 3 cut(s) 9, 292, 370
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 6, 289, 367
BstMWI GCNNNNNNNGC 2 cut(s) 380, 389
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 55, 225
BstUI CGCG 5 cut(s) 118, 232, 301, 361, 363
BsuRI GGCC 2 cut(s) 297, 392
BtgI CCRYGG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 3 cut(s) 299, 381, 385
CfoI GCGC 3 cut(s) 120, 232, 363
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 4 cut(s) 16, 296, 417, 448
CseI GACGC 2 cut(s) 75, 352
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 388, 421
CviJI RGCY 7 cut(s) 91, 238, 297, 355, 392, 408, 478
CviKI_1 RGCY 7 cut(s) 91, 238, 297, 355, 392, 408, 478
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 332
DpnI GATC 3 cut(s) 8, 291, 369
DpnII GATC 3 cut(s) 6, 289, 367
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 1 cut(s) 147
Eco47I GGWCC 3 cut(s) 16, 417, 448
EcoRII CCWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 2 cut(s) 391, 424
FaiI YATR 4 cut(s) 312, 389, 422, 487
FaqI GGGAC 1 cut(s) 2
FatI CATG 2 cut(s) 387, 420
FauI CCCGC 1 cut(s) 306
FblI GTMKAC 1 cut(s) 199
FokI GGATG 1 cut(s) 446
GlaI GCGC 3 cut(s) 119, 231, 362
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 2 cut(s) 297, 392
HapII CCGG 2 cut(s) 57, 380
HgaI GACGC 2 cut(s) 75, 352
HhaI GCGC 3 cut(s) 120, 232, 363
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 391, 424
Hin6I GCGC 3 cut(s) 118, 230, 361
HinP1I GCGC 3 cut(s) 118, 230, 361
HincII GTYRAC 3 cut(s) 62, 113, 200
HindII GTYRAC 3 cut(s) 62, 113, 200
HinfI GANTC 1 cut(s) 201
HpaII CCGG 2 cut(s) 57, 380
Hpy166II GTNNAC 3 cut(s) 62, 113, 200
Hpy188III TCNNGA 3 cut(s) 86, 277, 428
Hpy8I GTNNAC 3 cut(s) 62, 113, 200
Hpy99I CGWCG 3 cut(s) 69, 201, 368
HpyAV CCTTC 2 cut(s) 38, 164
HpyCH4III ACNGT 2 cut(s) 341, 397
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 389
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 391, 424
HspAI GCGC 3 cut(s) 118, 230, 361
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
Kzo9I GATC 3 cut(s) 6, 289, 367
LmnI GCTCC 2 cut(s) 279, 460
LpnPI CCDG 9 cut(s) 70, 174, 192, 212, 239, 252, 262, 393, 464
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 214, 302
MalI GATC 3 cut(s) 8, 291, 369
MboI GATC 3 cut(s) 6, 289, 367
MboII GAAGA 4 cut(s) 44, 164, 244, 299
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 2 cut(s) 137, 439
MluNI TGGCCA 1 cut(s) 392
MlyI GAGTC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 392
MroNI GCCGGC 1 cut(s) 379
MscI TGGCCA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 2 cut(s) 57, 380
MspR9I CCNGG 2 cut(s) 57, 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 5 cut(s) 118, 232, 301, 361, 363
MwoI GCNNNNNNNGC 2 cut(s) 380, 389
NaeI GCCGGC 1 cut(s) 381
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 6, 289, 367
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 2 cut(s) 391, 424
NlaIV GGNNCC 2 cut(s) 18, 211
NmuCI GTSAC 2 cut(s) 214, 302
PcsI WCGNNNNNNNCGW 3 cut(s) 100, 106, 298
PdiI GCCGGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 18, 211
PspPI GGNCC 4 cut(s) 16, 296, 417, 448
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SalI GTCGAC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 6, 289, 367
Sau96I GGNCC 4 cut(s) 16, 296, 417, 448
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 57, 227
SetI ASST 7 cut(s) 52, 156, 192, 199, 246, 410, 419
SinI GGWCC 3 cut(s) 16, 417, 448
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 2 cut(s) 137, 439
SsiI CCGC 3 cut(s) 116, 158, 299
StyD4I CCNGG 2 cut(s) 55, 225
TaaI ACNGT 2 cut(s) 341, 397
TaiI ACGT 1 cut(s) 199
TaqI TCGA 6 cut(s) 34, 199, 246, 258, 292, 366
TasI AATT 2 cut(s) 137, 439
TseFI GTSAC 2 cut(s) 214, 302
Tsp45I GTSAC 2 cut(s) 214, 302
TspDTI ATGAA 2 cut(s) 158, 244
VpaK11BI GGWCC 3 cut(s) 16, 417, 448
XapI RAATTY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.