RLG00000001614

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000349
Physical Location & Seq
Forward (+)
18258040 .. 18259305
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001614

Sequence Viewer

Length: 579 bp
ATGAGTTTGCTCGAGGCCATCCATAACTCCCTCGTCTCCCTCCAATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCGACCACCTCTTCCCAGTCAACGACGCCGAACCCCTCCCCATCACGAGCCACGGCTTCGCTGAGTTAGTCAATCGCGCTCTCATTCTCCGCTCCAATTCTCCAATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCGCTCTGCCGTCACGCGCTTCCAGGTGCGTGAGCCTGACCTCGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGCCCCACGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCACGCGGGTCGATCTCAGGTTGCCGGCGAGCATGGCCACAGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCATGAGGATGTAGATTTTGATAGACCAGATGTGGGAGCGTTTGATTTTGGGGCTACACCCATAGAGCTAGCTTTAGTCAATAGAGAGAGACCCAGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

193

Amino Acids

22.36

Weight (kDa)

5.67

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 243
AccII CGCG 3 cut(s) 162, 271, 412
AciI CCGC 3 cut(s) 175, 202, 412
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 441
AcvI CACGTG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 227, 320
AfiI CCNNNNNNNGG 2 cut(s) 45, 509
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 459, 544, 548
AluI AGCT 3 cut(s) 459, 544, 548
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 3 cut(s) 40, 71, 559
AlwI GGATC 1 cut(s) 45
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 2 cut(s) 15, 441
AspLEI GCGC 3 cut(s) 164, 258, 273
AspS9I GGNCC 2 cut(s) 60, 468
AsuHPI GGTGA 1 cut(s) 475
AsuNHI GCTAGC 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 2 cut(s) 60, 468
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 2 cut(s) 349, 461
BauI CACGAG 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 461
BccI CCATC 3 cut(s) 26, 134, 330
BceAI ACGGC 3 cut(s) 154, 248, 406
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 40, 71, 559
BfaI CTAG 2 cut(s) 545, 577
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 60, 468
BmeT110I CYCGRG 1 cut(s) 11
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 60, 468
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 95
BmtI GCTAGC 1 cut(s) 548
BmuI ACTGGG 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 349
BsaAI YACGTR 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 509
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 101, 223
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 18, 490
BseLI CCNNNNNNNGG 2 cut(s) 45, 509
BseMII CTCAG 3 cut(s) 138, 374, 436
BseNI ACTGG 2 cut(s) 101, 223
Bsh1236I CGCG 3 cut(s) 162, 271, 412
BshFI GGCC 2 cut(s) 17, 443
BsiHKAI GWGCWC 1 cut(s) 461
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 45, 509
BsmAI GTCTC 3 cut(s) 40, 71, 559
BsmBI CGTCTC 2 cut(s) 40, 71
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 17, 443
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 349, 461
Bsp143I GATC 3 cut(s) 50, 340, 418
BspACI CCGC 3 cut(s) 175, 202, 412
BspANI GGCC 2 cut(s) 17, 443
BspCNI CTCAG 3 cut(s) 139, 375, 435
BspFNI CGCG 3 cut(s) 162, 271, 412
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 62
BspOI GCTAGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 559
BsrBI CCGCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 101, 223
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 50, 340, 418
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 432, 436, 546
BstDEI CTNAG 3 cut(s) 147, 383, 422
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 2 cut(s) 18, 490
BstFNI CGCG 3 cut(s) 162, 271, 412
BstHHI GCGC 3 cut(s) 164, 258, 273
BstKTI GATC 3 cut(s) 53, 343, 421
BstMAI GTCTC 3 cut(s) 40, 71, 559
BstMBI GATC 3 cut(s) 50, 340, 418
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 3 cut(s) 162, 271, 412
BsuRI GGCC 2 cut(s) 17, 443
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 2 cut(s) 18, 490
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 432, 436, 546
CciI TCATGA 1 cut(s) 478
CfoI GCGC 3 cut(s) 164, 258, 273
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 60, 468
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 226, 319
CviAII CATG 3 cut(s) 439, 472, 479
CviQI GTAC 2 cut(s) 226, 319
DdeI CTNAG 3 cut(s) 147, 383, 422
DpnI GATC 3 cut(s) 52, 342, 420
DpnII GATC 3 cut(s) 50, 340, 418
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 459
Eco24I GRGCYC 2 cut(s) 349, 461
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 60, 468
Eco53kI GAGCTC 1 cut(s) 459
Eco72I CACGTG 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 349, 461
Esp3I CGTCTC 2 cut(s) 40, 71
FaeI CATG 3 cut(s) 442, 475, 482
FaiI YATR 6 cut(s) 24, 363, 440, 473, 480, 539
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 438, 471, 478
FauI CCCGC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 243
FokI GGATG 2 cut(s) 5, 497
FriOI GRGCYC 2 cut(s) 349, 461
FspBI CTAG 2 cut(s) 545, 577
GlaI GCGC 3 cut(s) 163, 257, 272
GsuI CTGGAG 1 cut(s) 349
HaeIII GGCC 2 cut(s) 17, 443
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 119
HhaI GCGC 3 cut(s) 164, 258, 273
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 3 cut(s) 442, 475, 482
Hin6I GCGC 3 cut(s) 162, 256, 271
HinP1I GCGC 3 cut(s) 162, 256, 271
HincII GTYRAC 2 cut(s) 106, 244
HindII GTYRAC 2 cut(s) 106, 244
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 106, 244
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 130, 328, 479
Hpy8I GTNNAC 2 cut(s) 106, 244
Hpy99I CGWCG 2 cut(s) 113, 245
HpyAV CCTTC 2 cut(s) 82, 208
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4IV ACGT 2 cut(s) 240, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 3 cut(s) 147, 383, 422
HpySE526I ACGT 2 cut(s) 240, 352
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 3 cut(s) 442, 475, 482
HspAI GCGC 3 cut(s) 162, 256, 271
KroI GCCGGC 1 cut(s) 430
KroNI GCCGGC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 50, 340, 418
LmnI GCTCC 3 cut(s) 182, 330, 512
MaeI CTAG 2 cut(s) 545, 577
MaeII ACGT 2 cut(s) 240, 352
MaeIII GTNAC 2 cut(s) 265, 353
MalI GATC 3 cut(s) 52, 342, 420
MbiI CCGCTC 1 cut(s) 177
MboI GATC 3 cut(s) 50, 340, 418
MboII GAAGA 4 cut(s) 88, 208, 295, 350
MhlI GDGCHC 2 cut(s) 349, 461
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 111
Mox20I TGGCCA 1 cut(s) 443
MroNI GCCGGC 1 cut(s) 430
MscI TGGCCA 1 cut(s) 443
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 3 cut(s) 162, 271, 412
MwoI GCNNNNNNNGC 1 cut(s) 440
NaeI GCCGGC 1 cut(s) 432
NdeII GATC 3 cut(s) 50, 340, 418
NgoMIV GCCGGC 1 cut(s) 430
NheI GCTAGC 1 cut(s) 544
NlaIII CATG 3 cut(s) 442, 475, 482
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 265, 353
PaeR7I CTCGAG 1 cut(s) 11
PagI TCATGA 1 cut(s) 478
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 349
PdiI GCCGGC 1 cut(s) 432
PleI GAGTC 1 cut(s) 239
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 276
PspCI CACGTG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 2 cut(s) 60, 468
PspXI VCTCGAGB 1 cut(s) 11
RsaI GTAC 2 cut(s) 227, 320
RsaNI GTAC 2 cut(s) 226, 319
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 461
SalI GTCGAC 1 cut(s) 242
Sau3AI GATC 3 cut(s) 50, 340, 418
Sau96I GGNCC 2 cut(s) 60, 468
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 349, 461
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 2 cut(s) 60, 468
SlaI CTCGAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 175, 202, 412
SspMI CTAG 2 cut(s) 545, 577
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 448
TaiI ACGT 2 cut(s) 243, 355
TaqI TCGA 7 cut(s) 12, 78, 243, 297, 309, 343, 417
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 225
TscAI CASTG 1 cut(s) 453
TseFI GTSAC 2 cut(s) 265, 353
Tsp45I GTSAC 2 cut(s) 265, 353
TspDTI ATGAA 3 cut(s) 202, 295, 467
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 2 cut(s) 60, 468
XhoI CTCGAG 1 cut(s) 11
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 545, 577
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.