pycom17g08640

A Receptor for Ubiquitination Targets

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
6499617 .. 6499958
342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08640.1

Sequence Viewer

Length: 342 bp
ATGGGTGTTGAGAGATTGAGCCTCGCGCGGTGTTATCTCAATCTGCCGGCGAATTTGCCCACCATGCGGTTCGGGTCGATTGGGTCAATGGTTCTCGACGACGTTTATTTGACGGACCAGATGGTGGAGGATTTGATTCTGGGTTGCCCCAATTTGGAGGCTTTCGAGATTCTTGGGTGTCGCGGGCCAATTCATTTGAAGATATGCAGCAAAAGGCTCAAAAGGCTGCGAATTGTATTGGGGTATTATTTTCCTGATGATCCTGAAAAGAGACAGACATTGTTGGTTGATTGCCCCAACATTTGTTCGATCAATTTGGATCTATGTTTCTTACCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

5.73

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 79 9.2e-07 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 4 - 105 8.4e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AccII CGCG 3 cut(s) 26, 28, 183
AciI CCGC 3 cut(s) 28, 67, 183
AclWI GGATC 2 cut(s) 254, 327
AcsI RAATTY 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 66, 124, 154
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 254, 327
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 207, 226
ApoI RAATTY 1 cut(s) 52
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 115, 185
AvaII GGWCC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 213, 219
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 265
BisI GCNGC 2 cut(s) 208, 227
BlsI GCNGC 2 cut(s) 209, 228
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 185
BmrFI CCNGG 1 cut(s) 336
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 124, 154
Bse118I RCCGGY 1 cut(s) 46
BseBI CCWGG 1 cut(s) 336
BseLI CCNNNNNNNGG 3 cut(s) 66, 124, 154
BseXI GCAGC 2 cut(s) 213, 219
Bsh1236I CGCG 3 cut(s) 26, 28, 183
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 66, 124, 154
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 3 cut(s) 259, 309, 319
BspACI CCGC 3 cut(s) 28, 67, 183
BspANI GGCC 1 cut(s) 187
BspFNI CGCG 3 cut(s) 26, 28, 183
BspPI GGATC 2 cut(s) 254, 327
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssMI GATC 3 cut(s) 259, 309, 319
Bst2UI CCWGG 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 48, 185
BstFNI CGCG 3 cut(s) 26, 28, 183
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 262, 312, 322
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 3 cut(s) 259, 309, 319
BstMWI GCNNNNNNNGC 2 cut(s) 64, 223
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstUI CGCG 3 cut(s) 26, 28, 183
BstV1I GCAGC 2 cut(s) 213, 219
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 48, 185
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 115, 185
CsiI ACCWGGT 1 cut(s) 334
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 21, 161, 187, 217, 226
CviKI_1 RGCY 5 cut(s) 21, 161, 187, 217, 226
DpnI GATC 3 cut(s) 261, 311, 321
DpnII GATC 3 cut(s) 259, 309, 319
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 205, 325
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 208, 227
Fsp4HI GCNGC 2 cut(s) 208, 227
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 208, 227
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 2 cut(s) 136, 169
HpaII CCGG 1 cut(s) 47
Hpy188III TCNNGA 4 cut(s) 95, 166, 254, 263
Hpy99I CGWCG 2 cut(s) 101, 104
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 223
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 26
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Kzo9I GATC 3 cut(s) 259, 309, 319
LpnPI CCDG 6 cut(s) 60, 125, 131, 267, 276, 321
Lsp1109I GCAGC 2 cut(s) 213, 219
MabI ACCWGGT 1 cut(s) 334
MaeII ACGT 1 cut(s) 102
MalI GATC 3 cut(s) 261, 311, 321
MboI GATC 3 cut(s) 259, 309, 319
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 319
MluCI AATT 5 cut(s) 52, 151, 189, 231, 313
MnlI CCTC 3 cut(s) 32, 121, 151
MroNI GCCGGC 1 cut(s) 46
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 3 cut(s) 26, 28, 183
MwoI GCNNNNNNNGC 2 cut(s) 64, 223
NaeI GCCGGC 1 cut(s) 48
NdeII GATC 3 cut(s) 259, 309, 319
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 67
PdiI GCCGGC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 136, 169
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 2 cut(s) 209, 228
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 2 cut(s) 115, 185
PsuI RGATCY 1 cut(s) 319
SatI GCNGC 2 cut(s) 208, 227
Sau3AI GATC 3 cut(s) 259, 309, 319
Sau96I GGNCC 2 cut(s) 115, 185
ScrFI CCNGG 1 cut(s) 336
SetI ASST 2 cut(s) 105, 337
SexAI ACCWGGT 1 cut(s) 334
SinI GGWCC 1 cut(s) 115
Sse9I AATT 5 cut(s) 52, 151, 189, 231, 313
SsiI CCGC 3 cut(s) 28, 67, 183
StyD4I CCNGG 1 cut(s) 334
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 77, 96, 165, 308
TasI AATT 5 cut(s) 52, 151, 189, 231, 313
TfiI GAWTC 2 cut(s) 136, 169
TseI GCWGC 2 cut(s) 207, 226
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.