FvH4_6g43970

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000349
Physical Location & Seq
Forward (+)
33946474 .. 33947476
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43970.t1

Sequence Viewer

Length: 621 bp
ATGAATCTCTGCTCAATGAGATCAATTTATTTTGAACGAGTTGATCTGACGGATCAGATGGTCTGGGATTTGATTTTGGAGTGTCTGAATCTCGAGCAGTTGGAGCTCCGGAGCTGTTTGAGGTTGAAGAATTTGGTTATACGTAGCAGTAGGATTAAGAAGTTAGCTCTTGGGTATGATTATGATATAGCTCTTGGGTTACTGGAGCAAGCGTCTCATGTTGAGAAGCTTATTGTGCAAAATTGGTGGTACAAGTTTCTGATATCAAAGGATCCTTTCCCTAAAGATTTTGAGCTCAACAATCTCAACCATTTAGAGTTACGTACTGGTTATACTCAATATGATCTTGTTGGCATGGCTGCACTGCTTGCACTTTGTCCCAATGTTCAGACAATGGTTCTTGATTACACTGACAAGATAAAAGAAGATGAGAATTTACCAGAGGAGTTGTTGAATGAAGTTGCGTTTAACATACCAAAGCTGAAGAAAGTAACAATGGTAGCATATACTGGAACACAAGTTCAGGTTGATTTGGTGACAATATTGAACAGGCAAGGGGTAAAGATTGAACTTGTGTCTATCAATTTTGATGATTATAATTCATATCCTTATGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

207

Amino Acids

23.96

Weight (kDa)

4.93

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccIII TCCGGA 1 cut(s) 108
AclWI GGATC 3 cut(s) 60, 266, 279
AcsI RAATTY 2 cut(s) 130, 433
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 2 cut(s) 251, 325
AgsI TTSAA 5 cut(s) 35, 127, 454, 547, 569
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 7 cut(s) 106, 114, 167, 191, 229, 295, 481
AluI AGCT 7 cut(s) 106, 114, 167, 191, 229, 295, 481
Alw21I GWGCWC 2 cut(s) 108, 297
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 3 cut(s) 60, 266, 279
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 2 cut(s) 130, 433
AsuHPI GGTGA 1 cut(s) 547
AvaI CYCGRG 1 cut(s) 92
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 2 cut(s) 108, 297
Bbv12I GWGCWC 2 cut(s) 108, 297
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 219
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 224
BsaAI YACGTR 2 cut(s) 143, 323
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 3 cut(s) 207, 331, 514
BseAI TCCGGA 1 cut(s) 108
BseNI ACTGG 3 cut(s) 207, 331, 514
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 345
BsiHKAI GWGCWC 2 cut(s) 108, 297
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 108, 297
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 5 cut(s) 20, 43, 52, 271, 343
BspEI TCCGGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 3 cut(s) 60, 266, 279
BsrI ACTGG 3 cut(s) 207, 331, 514
BssMI GATC 5 cut(s) 20, 43, 52, 271, 343
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 2 cut(s) 143, 323
BstC8I GCNNGC 2 cut(s) 210, 369
BstKTI GATC 5 cut(s) 23, 46, 55, 274, 346
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 5 cut(s) 20, 43, 52, 271, 343
BstMWI GCNNNNNNNGC 3 cut(s) 103, 235, 368
BstSNI TACGTA 2 cut(s) 143, 323
BstV1I GCAGC 1 cut(s) 346
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 362, 408
Cac8I GCNNGC 2 cut(s) 210, 369
CseI GACGC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 250, 324
CspCI CAANNNNNGTGG 2 cut(s) 227, 262
CviAII CATG 2 cut(s) 218, 355
CviJI RGCY 8 cut(s) 106, 114, 167, 191, 229, 295, 359, 481
CviKI_1 RGCY 8 cut(s) 106, 114, 167, 191, 229, 295, 359, 481
CviQI GTAC 2 cut(s) 250, 324
DpnI GATC 5 cut(s) 22, 45, 54, 273, 345
DpnII GATC 5 cut(s) 20, 43, 52, 271, 343
Ecl136II GAGCTC 2 cut(s) 106, 295
Eco105I TACGTA 2 cut(s) 143, 323
Eco24I GRGCYC 2 cut(s) 108, 297
Eco32I GATATC 1 cut(s) 264
Eco53kI GAGCTC 2 cut(s) 106, 295
Eco57I CTGAAG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 106, 295
EcoRV GATATC 1 cut(s) 264
EcoT38I GRGCYC 2 cut(s) 108, 297
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 2 cut(s) 221, 358
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 217, 354
Fnu4HI GCNGC 1 cut(s) 360
FriOI GRGCYC 2 cut(s) 108, 297
Fsp4HI GCNGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 224
HapII CCGG 1 cut(s) 109
HgaI GACGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 221, 358
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 2 cut(s) 4, 88
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 547
Hpy188I TCNGA 5 cut(s) 48, 57, 87, 261, 390
Hpy188III TCNNGA 3 cut(s) 92, 109, 401
HpyCH4IV ACGT 2 cut(s) 142, 322
HpyCH4V TGCA 4 cut(s) 238, 362, 371, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 235, 368
HpySE526I ACGT 2 cut(s) 142, 322
Hsp92II CATG 2 cut(s) 221, 358
Kpn2I TCCGGA 1 cut(s) 108
Kzo9I GATC 5 cut(s) 20, 43, 52, 271, 343
LmnI GCTCC 4 cut(s) 103, 111, 111, 205
LpnPI CCDG 8 cut(s) 49, 122, 188, 312, 453, 495, 509, 535
Lsp1109I GCAGC 1 cut(s) 346
MaeII ACGT 2 cut(s) 142, 322
MaeIII GTNAC 4 cut(s) 198, 318, 490, 535
MalI GATC 5 cut(s) 22, 45, 54, 273, 345
MboI GATC 5 cut(s) 20, 43, 52, 271, 343
MboII GAAGA 3 cut(s) 139, 437, 496
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 2 cut(s) 108, 297
MluCI AATT 6 cut(s) 24, 130, 241, 433, 583, 598
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 114, 436
MroI TCCGGA 1 cut(s) 108
MseI TTAA 2 cut(s) 156, 468
MspI CCGG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 103, 235, 368
NdeII GATC 5 cut(s) 20, 43, 52, 271, 343
NlaIII CATG 2 cut(s) 221, 358
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 535
PaeR7I CTCGAG 1 cut(s) 92
PfeI GAWTC 2 cut(s) 4, 88
PkrI GCNGC 1 cut(s) 361
Ppu21I YACGTR 2 cut(s) 143, 323
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 2 cut(s) 108, 297
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 251, 325
RsaNI GTAC 2 cut(s) 250, 324
SacI GAGCTC 2 cut(s) 108, 297
SaqAI TTAA 2 cut(s) 156, 468
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 5 cut(s) 20, 43, 52, 271, 343
SduI GDGCHC 2 cut(s) 108, 297
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 2 cut(s) 143, 323
Sse9I AATT 6 cut(s) 24, 130, 241, 433, 583, 598
SspI AATATT 1 cut(s) 543
SstI GAGCTC 2 cut(s) 108, 297
TaiI ACGT 2 cut(s) 145, 325
TaqI TCGA 1 cut(s) 93
TasI AATT 6 cut(s) 24, 130, 241, 433, 583, 598
TfiI GAWTC 2 cut(s) 4, 88
Tru1I TTAA 2 cut(s) 156, 468
Tru9I TTAA 2 cut(s) 156, 468
TscAI CASTG 2 cut(s) 369, 415
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 359
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 3 cut(s) 17, 471, 591
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 369, 415
XapI RAATTY 2 cut(s) 130, 433
XhoI CTCGAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.