Rroxscaffold_3G00258030

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000349
Physical Location & Seq
Reverse (-)
52393068 .. 52394057
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258030.1

Sequence Viewer

Length: 990 bp
ATGAAAAAGACCCCAATTCCACCACCTCTTCCAAACTCTAATCGGAACCTAAACGACCTACCGCAGGAAGTCCTCGTCTACATCTTGTCCTTCCTCCCCACAATAGAGGCGATCCAGACCTCTCTCATTTCCAGGAAATGGCGAAACCTCTGGTTCTTTCTCACCTCTTTCAACTTCTCCTTCGAAACCTGCTTTCCTTACTTCGATAATCCTCTTCCCTTTTATACCCGCCGGATGACTCGACCCTTCGCCAACTTTGTGGATCGCGCTCTCACCACTCGCCCCGCCGATCCTGCCGTCCATTCCTTCAGTCTATCATTCATCTACGACTCCGATTACGAAGTCCGTGTCGAGTCTTGGATTCGCACCGCCGTGACGCACCTCCAAGCCCGTGAGCTGCACCTCGACTTCTATATCGACTATGACTATGACTTCTCTGTTTACAAATATGAATTCTTCTTCTCAGAGCTGAGAAATGGCTGCGTACAAGTCTTGAAACTCACCAGTTGTAATATTACACTGCCGGACGACATGGATCTTGGCTCGCTGAGATCCATGTTTCTGGATCGGGTTAATCTAGATGACGAGGAGGTGCGGAAATTGTTTTCGGGGTGTCCAAATCTCGAGCACTTTGAGCTCCAAAACTGTCTGGGGGTGAAGGATTTGTGTATACGTAGCACCAAGCTTAAGAAGCTTGCTCTTGGATTTGTTCCTAATCTAGCTGCATTCAGCTGGAACACTACAGAGATCGAGATTGATTGCCCTAAACTTCTTTCATTAAGTTTCACTGAATGCGACTTTAACCAGTTTGTGCTTAAAAAAGCGCCTGCACTAGTCGAGCTTTCTATACATCTTTCGGTGCTAGAGCCTGAGGACTATCATTTATGGAGGAAGACTGTGCGGCTACTCGTGCAAGCACCTACTGTTAAGAAGCTTAAGGTGCCAAATTTGTGGATTATGGTAAACTTTCTCCATTGTTCATTGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

329

Amino Acids

38.47

Weight (kDa)

6.19

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 51 1.1e-08 F-box domain
F-box-like PF12937 17 - 50 9.6e-07 F-box-like
LRR_At1g61320_AtMIF1 PF23622 104 - 314 5.2e-15 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 118 - 234 4.2e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 940
AccB7I CCANNNNNTGG 1 cut(s) 138
AccI GTMKAC 2 cut(s) 78, 670
AccII CGCG 1 cut(s) 267
AciI CCGC 6 cut(s) 62, 229, 285, 369, 595, 901
AclWI GGATC 6 cut(s) 106, 270, 284, 543, 546, 573
AcsI RAATTY 2 cut(s) 452, 946
AcuI CTGAAG 1 cut(s) 292
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 64, 138
AflII CTTAAG 2 cut(s) 686, 935
AgsI TTSAA 2 cut(s) 172, 496
AhlI ACTAGT 1 cut(s) 832
AjnI CCWGG 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 9 cut(s) 397, 469, 637, 685, 694, 722, 732, 841, 934
AluI AGCT 9 cut(s) 397, 469, 637, 685, 694, 722, 732, 841, 934
Alw21I GWGCWC 2 cut(s) 630, 639
AlwI GGATC 6 cut(s) 106, 270, 284, 543, 546, 573
Ama87I CYCGRG 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 397, 480, 722
ApoI RAATTY 2 cut(s) 452, 946
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 2 cut(s) 269, 826
AsuHPI GGTGA 4 cut(s) 154, 265, 493, 667
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 623
AxyI CCTNAGG 1 cut(s) 870
BanI GGYRCC 1 cut(s) 940
BanII GRGCYC 1 cut(s) 639
BauI CACGAG 1 cut(s) 908
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 2 cut(s) 630, 639
BbvI GCAGC 3 cut(s) 384, 467, 709
BceAI ACGGC 2 cut(s) 281, 356
BciT130I CCWGG 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 4 cut(s) 578, 719, 833, 863
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 827
BfrI CTTAAG 2 cut(s) 686, 935
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 4 cut(s) 398, 481, 723, 902
BlsI GCNGC 4 cut(s) 399, 482, 724, 903
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 623
BmiI GGNNCC 2 cut(s) 47, 942
BmrFI CCNGG 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 899
Bpu14I TTCGAA 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 674
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 138
Bse1I ACTGG 2 cut(s) 504, 805
Bse21I CCTNAGG 1 cut(s) 870
Bse3DI GCAATG 1 cut(s) 980
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 64, 138
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 4 cut(s) 461, 477, 539, 861
BseNI ACTGG 2 cut(s) 504, 805
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 3 cut(s) 384, 467, 709
BsgI GTGCAG 2 cut(s) 383, 813
Bsh1236I CGCG 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 940
BsiHKAI GWGCWC 2 cut(s) 630, 639
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 2 cut(s) 232, 524
BslI CCNNNNNNNGG 2 cut(s) 64, 138
BsmI GAATGC 2 cut(s) 725, 797
BsoBI CYCGRG 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 630, 639
Bsp143I GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
BspACI CCGC 6 cut(s) 62, 229, 285, 369, 595, 901
BspCNI CTCAG 4 cut(s) 462, 476, 540, 862
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 47, 942
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 6 cut(s) 106, 270, 284, 543, 546, 573
BspT104I TTCGAA 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 940
BspTI CTTAAG 2 cut(s) 686, 935
BsrDI GCAATG 1 cut(s) 980
BsrI ACTGG 2 cut(s) 504, 805
BssMI GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
BssNAI GTATAC 1 cut(s) 671
BssSI CACGAG 1 cut(s) 908
Bst1107I GTATAC 1 cut(s) 671
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 647, 898, 925
Bst6I CTCTTC 2 cut(s) 33, 219
BstAFI CTTAAG 2 cut(s) 686, 935
BstBAI YACGTR 1 cut(s) 674
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 4 cut(s) 545, 696, 828, 915
BstDEI CTNAG 4 cut(s) 463, 470, 548, 870
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 2 cut(s) 269, 826
BstKTI GATC 7 cut(s) 114, 265, 292, 538, 554, 568, 750
BstMBI GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
BstMWI GCNNNNNNNGC 5 cut(s) 293, 634, 691, 910, 940
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 741
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 384, 467, 709
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 535, 551
BstXI CCANNNNNNTGG 3 cut(s) 259, 562, 951
BstYI RGATCY 2 cut(s) 535, 551
BstZ17I GTATAC 1 cut(s) 671
Bsu36I CCTNAGG 1 cut(s) 870
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 2 cut(s) 518, 786
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 4 cut(s) 545, 696, 828, 915
CfoI GCGC 2 cut(s) 269, 826
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 485
CviAII CATG 2 cut(s) 532, 556
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 4 cut(s) 463, 470, 548, 870
DpnI GATC 7 cut(s) 113, 264, 291, 537, 553, 567, 749
DpnII GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
Eam1104I CTCTTC 2 cut(s) 33, 219
EarI CTCTTC 2 cut(s) 33, 219
Ecl136II GAGCTC 1 cut(s) 637
Eco105I TACGTA 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 639
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 870
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 639
FaeI CATG 2 cut(s) 535, 559
FatI CATG 2 cut(s) 531, 555
FauI CCCGC 2 cut(s) 236, 292
FblI GTMKAC 2 cut(s) 78, 670
Fnu4HI GCNGC 4 cut(s) 398, 481, 723, 902
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 4 cut(s) 398, 481, 723, 902
FspBI CTAG 4 cut(s) 578, 719, 833, 863
GlaI GCGC 2 cut(s) 268, 825
GluI GCNGC 4 cut(s) 398, 481, 723, 902
HaeII RGCGCY 1 cut(s) 827
HapII CCGG 2 cut(s) 232, 524
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 269, 826
Hin1II CATG 2 cut(s) 535, 559
Hin6I GCGC 2 cut(s) 267, 824
HinP1I GCGC 2 cut(s) 267, 824
HindIII AAGCTT 3 cut(s) 683, 692, 932
HinfI GANTC 4 cut(s) 238, 329, 353, 361
HpaII CCGG 2 cut(s) 232, 524
HphI GGTGA 4 cut(s) 154, 265, 493, 667
Hpy166II GTNNAC 4 cut(s) 79, 442, 671, 964
Hpy188I TCNGA 3 cut(s) 45, 334, 466
Hpy188III TCNNGA 6 cut(s) 115, 493, 563, 578, 623, 751
Hpy8I GTNNAC 4 cut(s) 79, 442, 671, 964
HpyAV CCTTC 5 cut(s) 100, 190, 256, 316, 652
HpyCH4III ACNGT 3 cut(s) 647, 898, 925
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 400, 725, 830, 913
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 634, 691, 910, 940
HpyF3I CTNAG 4 cut(s) 463, 470, 548, 870
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 2 cut(s) 535, 559
HspAI GCGC 2 cut(s) 267, 824
Kzo9I GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
LmnI GCTCC 1 cut(s) 642
Lsp1109I GCAGC 3 cut(s) 384, 467, 709
MaeI CTAG 4 cut(s) 578, 719, 833, 863
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 373
MalI GATC 7 cut(s) 113, 264, 291, 537, 553, 567, 749
MboI GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
MboII GAAGA 5 cut(s) 20, 206, 448, 451, 904
MflI RGATCY 2 cut(s) 535, 551
MhlI GDGCHC 2 cut(s) 630, 639
MluCI AATT 4 cut(s) 15, 452, 599, 946
MlyI GAGTC 3 cut(s) 232, 323, 362
MseI TTAA 7 cut(s) 573, 687, 779, 801, 816, 927, 936
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 732
MspCI CTTAAG 2 cut(s) 686, 935
MspI CCGG 2 cut(s) 232, 524
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 2 cut(s) 725, 797
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 5 cut(s) 293, 634, 691, 910, 940
NdeII GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
NlaIII CATG 2 cut(s) 535, 559
NlaIV GGNNCC 2 cut(s) 47, 942
NmuCI GTSAC 1 cut(s) 373
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 623
PctI GAATGC 2 cut(s) 725, 797
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 4 cut(s) 399, 482, 724, 903
PleI GAGTC 3 cut(s) 232, 323, 361
PpsI GAGTC 3 cut(s) 232, 323, 361
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 47, 942
PsuI RGATCY 2 cut(s) 535, 551
PvuII CAGCTG 1 cut(s) 732
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 7 cut(s) 573, 687, 779, 801, 816, 927, 936
SatI GCNGC 4 cut(s) 398, 481, 723, 902
Sau3AI GATC 7 cut(s) 111, 262, 289, 535, 551, 565, 747
SchI GAGTC 3 cut(s) 232, 323, 362
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 630, 639
SfcI CTRYAG 1 cut(s) 741
Sfr274I CTCGAG 1 cut(s) 623
SfuI TTCGAA 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 3 cut(s) 623, 686, 935
SmoI CTYRAG 3 cut(s) 623, 686, 935
SnaBI TACGTA 1 cut(s) 674
SpeI ACTAGT 1 cut(s) 832
Sse9I AATT 4 cut(s) 15, 452, 599, 946
SsiI CCGC 6 cut(s) 62, 229, 285, 369, 595, 901
SspI AATATT 1 cut(s) 514
SspMI CTAG 4 cut(s) 578, 719, 833, 863
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 3 cut(s) 647, 898, 925
TaiI ACGT 1 cut(s) 676
TaqI TCGA 9 cut(s) 183, 204, 241, 351, 405, 417, 624, 750, 837
TasI AATT 4 cut(s) 15, 452, 599, 946
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 7 cut(s) 573, 687, 779, 801, 816, 927, 936
Tru9I TTAA 7 cut(s) 573, 687, 779, 801, 816, 927, 936
TscAI CASTG 2 cut(s) 525, 793
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 397, 480, 722
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 5 cut(s) 17, 310, 465, 765, 969
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 2 cut(s) 525, 793
Van91I CCANNNNNTGG 1 cut(s) 138
Vha464I CTTAAG 2 cut(s) 686, 935
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 2 cut(s) 452, 946
XbaI TCTAGA 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 623
XmiI GTMKAC 2 cut(s) 78, 670
XspI CTAG 4 cut(s) 578, 719, 833, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.