Rh2DG574000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000349
Physical Location & Seq
Forward (+)
80338181 .. 80339714
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG574000.1

Sequence Viewer

Length: 762 bp
ATGTCCGCCATGAATCTCTGCTCGCTGAGGTCAATTTTTATCGAACGGATTGATCTGACGGATCAGATGGTCCGGGATTTGGTTTCGGGGTGTCCGAATCTCGAGGACTTGGAGCTTCGGAGCTGTGTGGGGTTGAAGAATTTGAATATATGTAGCAGTAGGATTAAGAAGCTAGTGCTTGGGTATGATTATGATAGTGAGTCCAAGCAGAGCATTGAGATTGATTGCCCAAATCTTTGTTCGTTGAGTTTTAGTGACTGTAGTTCTGGTCAGTTTGTGCTTAAGGAAGCGCCGGCCCTGGTTGAGTTTCGTGTTGATTTTGCTTGCTTAACTAATAAGTACTTTGATTTGTGGGGTAAGATTGTGAGGCTACTGGAGCAAGCGCCTCATGTTGAGAAGCTTAATGTGGAAAATTGGTGGTATAAGCTTCTGATATCAGAGGATCCTTTCCCTAAAGATTTTAAGCTCAATTATCTCAACCATTTAGAGCTACGGACTGGTCATACTCAATATGATCTGGTTGGCATGGCAGCACTGCTTAAACTTTGTCCCAATCTCCAAACAATGGTTCTTGATTACCTTGACAAGATGAAAGAAGATGAGAATTTACCGGAAGAGTTCTTAAATGAACTAGTTGAGTTCAACATACCAAAGCTGAAGAAAGTTACAATCATAGCGTATACTGGAACAGAAGTGCAACTTAATTTTGTGACTATCTTGAAAAAGCAAGGAGTAAAGATTGAACTAGTGTGTCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

253

Amino Acids

29.1

Weight (kDa)

5.07

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 4 - 86 1.3e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 6 - 229 2e-18 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 680
AciI CCGC 1 cut(s) 6
AclWI GGATC 3 cut(s) 69, 437, 450
AcsI RAATTY 3 cut(s) 139, 604, 756
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 79, 565
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 5 cut(s) 136, 145, 643, 721, 743
AhlI ACTAGT 2 cut(s) 631, 745
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 4 cut(s) 223, 255, 552, 584
AluBI AGCT 8 cut(s) 115, 123, 172, 400, 427, 466, 490, 655
AluI AGCT 8 cut(s) 115, 123, 172, 400, 427, 466, 490, 655
AlwI GGATC 3 cut(s) 69, 437, 450
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 3 cut(s) 139, 604, 756
AspLEI GCGC 2 cut(s) 292, 385
AspS9I GGNCC 2 cut(s) 70, 295
AsuC2I CCSGG 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 442
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 542
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 74
BcuI ACTAGT 2 cut(s) 631, 745
BfaI CTAG 3 cut(s) 173, 632, 746
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 2 cut(s) 293, 386
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 74, 299
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 70, 295
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 74, 299
BpmI CTGGAG 1 cut(s) 395
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 610
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 565
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 378, 502, 688
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 79, 565
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 3 cut(s) 378, 502, 688
BseXI GCAGC 1 cut(s) 542
BshFI GGCC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 73, 293, 611
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 79, 565
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 1 cut(s) 296
BsoBI CYCGRG 1 cut(s) 101
Bsp143I GATC 4 cut(s) 52, 61, 442, 514
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 3 cut(s) 69, 437, 450
BspTI CTTAAG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 3 cut(s) 378, 502, 688
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 4 cut(s) 52, 61, 442, 514
BssNAI GTATAC 1 cut(s) 681
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 609
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 23, 294, 325, 381
BstDEI CTNAG 1 cut(s) 26
BstH2I RGCGCY 2 cut(s) 293, 386
BstHHI GCGC 2 cut(s) 292, 385
BstKTI GATC 4 cut(s) 55, 64, 445, 517
BstMBI GATC 4 cut(s) 52, 61, 442, 514
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 72, 297
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BstZ17I GTATAC 1 cut(s) 681
BsuRI GGCC 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 4 cut(s) 23, 294, 325, 381
CfoI GCGC 2 cut(s) 292, 385
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 70, 295
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 10, 389, 526
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 26
DpnI GATC 4 cut(s) 54, 63, 444, 516
DpnII GATC 4 cut(s) 52, 61, 442, 514
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 297
EcoRV GATATC 1 cut(s) 435
FaeI CATG 3 cut(s) 13, 392, 529
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 534
FatI CATG 3 cut(s) 9, 388, 525
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 3 cut(s) 173, 632, 746
GlaI GCGC 2 cut(s) 291, 384
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 293, 386
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 73, 293, 611
HhaI GCGC 2 cut(s) 292, 385
Hin1II CATG 3 cut(s) 13, 392, 529
Hin6I GCGC 2 cut(s) 290, 383
HinP1I GCGC 2 cut(s) 290, 383
HindIII AAGCTT 2 cut(s) 398, 425
HinfI GANTC 3 cut(s) 13, 97, 200
HpaII CCGG 3 cut(s) 73, 293, 611
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 6 cut(s) 57, 66, 96, 120, 432, 439
Hpy188III TCNNGA 3 cut(s) 101, 572, 718
Hpy8I GTNNAC 1 cut(s) 681
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 3 cut(s) 13, 392, 529
HspAI GCGC 2 cut(s) 290, 383
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 4 cut(s) 52, 61, 442, 514
LmnI GCTCC 3 cut(s) 112, 120, 376
Lsp1109I GCAGC 1 cut(s) 542
MaeI CTAG 3 cut(s) 173, 632, 746
MaeIII GTNAC 3 cut(s) 254, 664, 709
MalI GATC 4 cut(s) 54, 63, 444, 516
MboI GATC 4 cut(s) 52, 61, 442, 514
MboII GAAGA 4 cut(s) 148, 608, 626, 670
MflI RGATCY 1 cut(s) 442
MluCI AATT 7 cut(s) 33, 139, 412, 469, 604, 703, 756
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 5 cut(s) 21, 97, 360, 396, 433
MroNI GCCGGC 1 cut(s) 292
MseI TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 3 cut(s) 73, 293, 611
MspR9I CCNGG 2 cut(s) 74, 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 376
NaeI GCCGGC 1 cut(s) 294
NciI CCSGG 1 cut(s) 74
NdeII GATC 4 cut(s) 52, 61, 442, 514
NgoMIV GCCGGC 1 cut(s) 292
NlaIII CATG 3 cut(s) 13, 392, 529
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 2 cut(s) 254, 709
PaeR7I CTCGAG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 13, 97
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 2 cut(s) 70, 295
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 4 cut(s) 52, 61, 442, 514
Sau96I GGNCC 2 cut(s) 70, 295
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 74, 299
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 101, 281
SmoI CTYRAG 2 cut(s) 101, 281
SpeI ACTAGT 2 cut(s) 631, 745
Sse9I AATT 7 cut(s) 33, 139, 412, 469, 604, 703, 756
SsiI CCGC 1 cut(s) 6
SspMI CTAG 3 cut(s) 173, 632, 746
StyD4I CCNGG 2 cut(s) 72, 297
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 2 cut(s) 42, 102
TasI AATT 7 cut(s) 33, 139, 412, 469, 604, 703, 756
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 2 cut(s) 13, 97
Tru1I TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
Tru9I TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 2 cut(s) 254, 709
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 2 cut(s) 254, 709
TspDTI ATGAA 3 cut(s) 26, 605, 642
TspGWI ACGGA 3 cut(s) 61, 74, 508
TspRI CASTG 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 565
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 3 cut(s) 139, 604, 756
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 3 cut(s) 173, 632, 746
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.