Rorug02G0485500

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
61541809 .. 61544261
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485500.1

Sequence Viewer

Length: 417 bp
ATGTTCGATTGCTTTGACTTGGTTTTTGAAGAATTGCTTTCTTTAAGAATTGAGCAGCCGGTCTTGTTGGCAATCAAGGTGCTTAATATTATCAAGCTTTATGGAAAGTCAATCCGTGTAAACAAGGTAAAGGAGATGGTGCTAGCCCTTTTGAGGGAATCAGAGCTGGCACTTACTGATGATGTTATTGAATCAATCGTTGACAAGTTTTTGATCATTCTGACAATGATGGAGGCAGATTTAAAAGGAGATGGAAAAATTGACCAAGAAGAGTTGAAGGAATATGTGGCAAATCTTATAAACAATATAACTCATTCCATATCTACAGTGAATCCTAAAAGCCTACTAATGTCACCGGACTTTTCTGGAGGTTATGAGTCTCCTTTGGTAGCTGTTGCAAGAGTTGGAATGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

4.81

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AciI CCGC 1 cut(s) 412
AfiI CCNNNNNNNGG 2 cut(s) 153, 154
AgsI TTSAA 3 cut(s) 29, 191, 277
AluBI AGCT 3 cut(s) 97, 166, 392
AluI AGCT 3 cut(s) 97, 166, 392
Alw26I GTCTC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AsuHPI GGTGA 1 cut(s) 345
AsuNHI GCTAGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 130, 223, 245
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 387
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 154
Bse118I RCCGGY 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 153, 154
BseXI GCAGC 1 cut(s) 67
BsiSI CCGG 2 cut(s) 59, 356
BslI CCNNNNNNNGG 2 cut(s) 153, 154
BsmAI GTCTC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 144, 168
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 144, 168
Cfr10I RCCGGY 1 cut(s) 58
CviJI RGCY 6 cut(s) 58, 97, 146, 166, 342, 392
CviKI_1 RGCY 6 cut(s) 58, 97, 146, 166, 342, 392
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DraI TTTAAA 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
FaiI YATR 6 cut(s) 102, 285, 299, 308, 320, 375
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 387
HapII CCGG 2 cut(s) 59, 356
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 4 cut(s) 158, 191, 331, 377
HpaII CCGG 2 cut(s) 59, 356
HphI GGTGA 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 121, 202
Hpy188I TCNGA 2 cut(s) 163, 222
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 121, 202
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 72, 152, 351, 369
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 351
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 41, 281
MluCI AATT 3 cut(s) 32, 48, 258
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 3 cut(s) 147, 226, 362
MseI TTAA 3 cut(s) 44, 84, 242
MspI CCGG 2 cut(s) 59, 356
Mva1269I GAATGC 1 cut(s) 414
NdeII GATC 1 cut(s) 213
NheI GCTAGC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 351
PctI GAATGC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 158, 191, 331
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 1 cut(s) 299
SaqAI TTAA 3 cut(s) 44, 84, 242
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 1 cut(s) 386
SetI ASST 6 cut(s) 81, 99, 129, 168, 373, 394
SfcI CTRYAG 1 cut(s) 324
Sse9I AATT 3 cut(s) 32, 48, 258
SsiI CCGC 1 cut(s) 412
SspI AATATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 6
TasI AATT 3 cut(s) 32, 48, 258
TfiI GAWTC 3 cut(s) 158, 191, 331
Tru1I TTAA 3 cut(s) 44, 84, 242
Tru9I TTAA 3 cut(s) 44, 84, 242
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 1 cut(s) 351
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 333
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.