Rw2G022070

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000349
Physical Location & Seq
Forward (+)
30848768 .. 30851093
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G022070.1

Sequence Viewer

Length: 756 bp
ATGGCAAGAAAAAGAAAGCCTTCCTTTTTCAAGGTTCTTATAGCTGACTTCTCTAACAAGCTGGATATCCCACAAGCTTTTCATAAGCATTTCCATGGAAGGGTACCTCAGCAGTCCCATCTTCGGACCACCCCTTCTGTTGGAACTTGGTTTGTTGTCGTGAAAAGTGATAACGTCAAGTTCTTTTTAGAAAAGAGAAGCAATTTTGTGCATGATATTGGTTTAAAGGAGGCCATCCACAACTCCCTCGTCTCCCCCCAATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCGGTCAACGACGCCAAACCCCTCCCCATCACGAGCCACGGCTTCGCCGAGTTCGTCAACCGCGCTCTCATTCTCTGCCCCAATTCTCCAATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGAACTACACCTCCCACGTCGACTCTTGGGTGCGCTCTGCCGTCACACGCTTCCAGGTGCGTGAGCCTGACCTTGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGCCCCGTGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGTTGTGTTGAGAGGCTCACTCGCGTCGATCTCGCGTTGCCTGCTAGCATGGCCACGGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGATGGACCAGATGTGGGAGCGTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

251

Amino Acids

29.32

Weight (kDa)

8.97

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 459
AccII CGCG 3 cut(s) 378, 630, 641
AciI CCGC 2 cut(s) 376, 418
AclWI GGATC 1 cut(s) 261
AcoI YGGCCR 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 105, 536
AfiI CCNNNNNNNGG 6 cut(s) 100, 123, 140, 261, 316, 724
AgsI TTSAA 1 cut(s) 31
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 4 cut(s) 44, 61, 77, 675
AluI AGCT 4 cut(s) 44, 61, 77, 675
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 256, 287
AlwI GGATC 1 cut(s) 261
AoxI GGCC 2 cut(s) 231, 657
Asp700I GAANNNNTTC 1 cut(s) 19
Asp718I GGTACC 1 cut(s) 103
AspLEI GCGC 2 cut(s) 380, 474
AspS9I GGNCC 4 cut(s) 126, 276, 684, 715
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 691
AsuNHI GCTAGC 1 cut(s) 650
AvaII GGWCC 4 cut(s) 126, 276, 684, 715
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 103
BanII GRGCYC 2 cut(s) 565, 677
BauI CACGAG 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 677
BbvCI CCTCAGC 1 cut(s) 108
BccI CCATC 5 cut(s) 126, 242, 350, 546, 706
BceAI ACGGC 2 cut(s) 370, 464
BciT130I CCWGG 1 cut(s) 494
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 256, 287
BfaI CTAG 1 cut(s) 651
Bme1390I CCNGG 2 cut(s) 317, 494
Bme18I GGWCC 4 cut(s) 126, 276, 684, 715
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 126, 276, 684, 715
BmiI GGNNCC 2 cut(s) 105, 278
BmrFI CCNGG 2 cut(s) 317, 494
BmtI GCTAGC 1 cut(s) 654
BplI GAGNNNNNCTC 2 cut(s) 610, 642
BpmI CTGGAG 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 716
BpuMI CCSGG 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 94, 352, 660
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 123, 140, 261, 316, 724
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 3 cut(s) 94, 352, 660
BseGI GGATG 2 cut(s) 234, 706
BseLI CCNNNNNNNGG 6 cut(s) 100, 123, 140, 261, 316, 724
BseMII CTCAG 2 cut(s) 122, 590
Bsh1236I CGCG 3 cut(s) 378, 630, 641
BshFI GGCC 2 cut(s) 233, 659
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 677
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 2 cut(s) 100, 262
BslI CCNNNNNNNGG 6 cut(s) 100, 123, 140, 261, 316, 724
BsmAI GTCTC 2 cut(s) 256, 287
BsmBI CGTCTC 2 cut(s) 256, 287
BsmFI GGGAC 2 cut(s) 100, 262
BsnI GGCC 2 cut(s) 233, 659
Bsp1286I GDGCHC 2 cut(s) 565, 677
Bsp143I GATC 3 cut(s) 266, 556, 634
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 2 cut(s) 376, 418
BspANI GGCC 2 cut(s) 233, 659
BspCNI CTCAG 2 cut(s) 121, 591
BspFNI CGCG 3 cut(s) 378, 630, 641
BspLI GGNNCC 2 cut(s) 105, 278
BspOI GCTAGC 1 cut(s) 654
BspPI GGATC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 94, 352, 660
BssMI GATC 3 cut(s) 266, 556, 634
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 94
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 608, 664
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 648, 652
BstDEI CTNAG 2 cut(s) 108, 599
BstDSI CCRYGG 3 cut(s) 94, 352, 660
BstF5I GGATG 2 cut(s) 234, 706
BstFNI CGCG 3 cut(s) 378, 630, 641
BstHHI GCGC 2 cut(s) 380, 474
BstKTI GATC 3 cut(s) 269, 559, 637
BstMAI GTCTC 2 cut(s) 256, 287
BstMBI GATC 3 cut(s) 266, 556, 634
BstMWI GCNNNNNNNGC 2 cut(s) 647, 656
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 315, 492
BstUI CGCG 3 cut(s) 378, 630, 641
BsuRI GGCC 2 cut(s) 233, 659
BtgI CCRYGG 3 cut(s) 94, 352, 660
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 234, 706
Cac8I GCNNGC 2 cut(s) 648, 652
CfoI GCGC 2 cut(s) 380, 474
Cfr13I GGNCC 4 cut(s) 126, 276, 684, 715
CseI GACGC 2 cut(s) 335, 619
Csp6I GTAC 2 cut(s) 104, 535
CviAII CATG 4 cut(s) 95, 212, 655, 688
CviQI GTAC 2 cut(s) 104, 535
DdeI CTNAG 2 cut(s) 108, 599
DpnI GATC 3 cut(s) 268, 558, 636
DpnII GATC 3 cut(s) 266, 556, 634
DraI TTTAAA 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 565, 677
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 4 cut(s) 126, 276, 684, 715
Eco53kI GAGCTC 1 cut(s) 675
EcoICRI GAGCTC 1 cut(s) 675
EcoRII CCWGG 1 cut(s) 492
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 565, 677
ErhI CCWWGG 1 cut(s) 94
Esp3I CGTCTC 2 cut(s) 256, 287
FaeI CATG 4 cut(s) 98, 215, 658, 691
FaiI YATR 8 cut(s) 41, 84, 96, 213, 579, 656, 689, 754
FalI AAGNNNNNCTT 3 cut(s) 36, 8, 40
FaqI GGGAC 2 cut(s) 100, 262
FatI CATG 4 cut(s) 94, 211, 654, 687
FblI GTMKAC 1 cut(s) 459
FokI GGATG 2 cut(s) 221, 713
FriOI GRGCYC 2 cut(s) 565, 677
FspBI CTAG 1 cut(s) 651
GlaI GCGC 2 cut(s) 379, 473
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 2 cut(s) 233, 659
HapII CCGG 1 cut(s) 317
HgaI GACGC 2 cut(s) 335, 619
HhaI GCGC 2 cut(s) 380, 474
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 4 cut(s) 98, 215, 658, 691
Hin6I GCGC 2 cut(s) 378, 472
HinP1I GCGC 2 cut(s) 378, 472
HincII GTYRAC 3 cut(s) 322, 373, 460
HindII GTYRAC 3 cut(s) 322, 373, 460
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 1 cut(s) 461
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 691
Hpy166II GTNNAC 3 cut(s) 322, 373, 460
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 4 cut(s) 160, 346, 544, 695
Hpy8I GTNNAC 3 cut(s) 322, 373, 460
Hpy99I CGWCG 3 cut(s) 329, 461, 635
HpyAV CCTTC 5 cut(s) 30, 93, 144, 298, 424
HpyCH4III ACNGT 2 cut(s) 608, 664
HpyCH4IV ACGT 2 cut(s) 174, 456
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 656
HpyF3I CTNAG 2 cut(s) 108, 599
HpySE526I ACGT 2 cut(s) 174, 456
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 4 cut(s) 98, 215, 658, 691
HspAI GCGC 2 cut(s) 378, 472
KpnI GGTACC 1 cut(s) 107
Kzo9I GATC 3 cut(s) 266, 556, 634
LmnI GCTCC 2 cut(s) 546, 727
MaeI CTAG 1 cut(s) 651
MaeII ACGT 2 cut(s) 174, 456
MaeIII GTNAC 2 cut(s) 481, 569
MalI GATC 3 cut(s) 268, 558, 636
MboI GATC 3 cut(s) 266, 556, 634
MboII GAAGA 5 cut(s) 113, 304, 424, 511, 566
MhlI GDGCHC 2 cut(s) 565, 677
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 2 cut(s) 202, 397
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 19
MscI TGGCCA 1 cut(s) 659
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 494
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 3 cut(s) 378, 630, 641
MwoI GCNNNNNNNGC 2 cut(s) 647, 656
NciI CCSGG 1 cut(s) 317
NcoI CCATGG 1 cut(s) 94
NdeII GATC 3 cut(s) 266, 556, 634
NheI GCTAGC 1 cut(s) 650
NlaIII CATG 4 cut(s) 98, 215, 658, 691
NlaIV GGNNCC 2 cut(s) 105, 278
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 481, 569
PcsI WCGNNNNNNNCGW 2 cut(s) 360, 366
PdmI GAANNNNTTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 677
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 105, 278
PspPI GGNCC 4 cut(s) 126, 276, 684, 715
RsaI GTAC 2 cut(s) 105, 536
RsaNI GTAC 2 cut(s) 104, 535
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 677
SalI GTCGAC 1 cut(s) 458
SaqAI TTAA 1 cut(s) 224
Sau3AI GATC 3 cut(s) 266, 556, 634
Sau96I GGNCC 4 cut(s) 126, 276, 684, 715
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 317, 494
SduI GDGCHC 2 cut(s) 565, 677
SinI GGWCC 4 cut(s) 126, 276, 684, 715
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 2 cut(s) 202, 397
SsiI CCGC 2 cut(s) 376, 418
SspMI CTAG 1 cut(s) 651
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 2 cut(s) 315, 492
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 608, 664
TaiI ACGT 2 cut(s) 177, 459
TaqI TCGA 5 cut(s) 294, 459, 525, 559, 633
TasI AATT 2 cut(s) 202, 397
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 2 cut(s) 481, 569
Tsp45I GTSAC 2 cut(s) 481, 569
TspDTI ATGAA 3 cut(s) 71, 418, 511
VpaK11BI GGWCC 4 cut(s) 126, 276, 684, 715
XmiI GTMKAC 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.