pycom17g02610

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
1730194 .. 1730535
342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02610.1

Sequence Viewer

Length: 342 bp
ATGGTGAACCCTTTAGTCTCGCATTCTCTCCCTGAATTTTATCTGCCAACACTTCCGGCCGTACAAGCCGCCGTTCGGCGACCACGCTCTACTCTCGCGCTCCGATTATCCCGTCCATACTTTCCGACTCTCTTTCCCGCACCACAGTCAATACTGCTCCTGTATCGATTCCTGAGATCAATTCGTGGTAACTCGCCTTTGCGCTCGGCAGTCAGGTATTACGATTTTCAGTTTTCCGTTCTGAGTAATGGGTGTGTCGAGAAATTAGGACTCACACGGTGTGAAATTAGGCCCAATTTTCCACCGTGCGCTTTTGTCGACAATGTCCTTGATTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.92

Weight (kDa)

10.04

Isoelectric Point (pI)

63.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 69, 138
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 35
AdeI CACNNNGTG 2 cut(s) 279, 281
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 2 cut(s) 57, 290
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 3 cut(s) 100, 204, 311
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 16
BceAI ACGGC 2 cut(s) 44, 56
BcoDI GTCTC 1 cut(s) 22
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 75
BseCI ATCGAT 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 164, 233
BseX3I CGGCCG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 59, 292
BshVI ATCGAT 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 59, 292
Bsp143I GATC 1 cut(s) 176
BspACI CCGC 2 cut(s) 69, 138
BspANI GGCC 2 cut(s) 59, 292
BspCNI CTCAG 2 cut(s) 165, 234
BspDI ATCGAT 1 cut(s) 166
BspFNI CGCG 1 cut(s) 98
BssMI GATC 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 147, 279, 306
BstDEI CTNAG 2 cut(s) 173, 242
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 3 cut(s) 100, 204, 311
BstKTI GATC 1 cut(s) 179
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstUI CGCG 1 cut(s) 98
BstZI CGGCCG 1 cut(s) 57
Bsu15I ATCGAT 1 cut(s) 166
BsuRI GGCC 2 cut(s) 59, 292
BsuTUI ATCGAT 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 337
CfoI GCGC 3 cut(s) 100, 204, 311
Cfr13I GGNCC 1 cut(s) 291
ClaI ATCGAT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 62
CviJI RGCY 3 cut(s) 59, 68, 292
CviKI_1 RGCY 3 cut(s) 59, 68, 292
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 2 cut(s) 173, 242
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
DraIII CACNNNGTG 2 cut(s) 279, 281
EaeI YGGCCR 1 cut(s) 57
EagI CGGCCG 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 57
FaiI YATR 1 cut(s) 118
FauI CCCGC 1 cut(s) 145
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GlaI GCGC 3 cut(s) 99, 203, 310
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 59, 292
HapII CCGG 1 cut(s) 56
HhaI GCGC 3 cut(s) 100, 204, 311
Hin6I GCGC 3 cut(s) 98, 202, 309
HinP1I GCGC 3 cut(s) 98, 202, 309
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 3 cut(s) 127, 168, 270
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 7, 319
Hpy188I TCNGA 3 cut(s) 104, 126, 243
Hpy188III TCNNGA 2 cut(s) 172, 259
Hpy8I GTNNAC 2 cut(s) 7, 319
HpyCH4III ACNGT 3 cut(s) 147, 279, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 173, 242
HspAI GCGC 3 cut(s) 98, 202, 309
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 105, 162
LpnPI CCDG 5 cut(s) 45, 69, 173, 185, 199
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MluCI AATT 5 cut(s) 35, 180, 263, 285, 295
MlyI GAGTC 2 cut(s) 121, 264
MmeI TCCRAC 1 cut(s) 149
MspI CCGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 22
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 185
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 121, 264
PpsI GAGTC 2 cut(s) 121, 264
PspPI GGNCC 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SalI GTCGAC 1 cut(s) 317
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 2 cut(s) 121, 264
SetI ASST 1 cut(s) 218
Sse9I AATT 5 cut(s) 35, 180, 263, 285, 295
SsiI CCGC 2 cut(s) 69, 138
TaaI ACNGT 3 cut(s) 147, 279, 306
TaqI TCGA 3 cut(s) 166, 258, 318
TasI AATT 5 cut(s) 35, 180, 263, 285, 295
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 323
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.