Rh7BG171600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000349
Physical Location & Seq
Forward (+)
13378451 .. 13378726
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG171600.1

Sequence Viewer

Length: 276 bp
ATGGATCTTGGCTCGCTGAGATCCATGTTTCTCGATCGGGTTAATCTAGATGACGAGGAGGTGCGGAAATTGTTTTCGGGGTGTCCAAATCTCGAGCACTTTGAGCTCCGAAACTGTCTGGGGGTGAAGGATTTGTGTATACGTAGCACCAAGATTAAGAAGCTTGCTTTTGGATTTGTTCCTAATCTAGCTGCATTCAGCTGGAACACTACAGAGATCGAGATTGATTGCCCTAACCTTCTTTCATTAAGTTTCACTGATCGAATGCGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

91

Amino Acids

10.47

Weight (kDa)

5.75

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 3 - 88 1.7e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 5 - 84 1.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 64
AclWI GGATC 2 cut(s) 12, 15
AluBI AGCT 4 cut(s) 106, 163, 191, 201
AluI AGCT 4 cut(s) 106, 163, 191, 201
Alw21I GWGCWC 2 cut(s) 99, 108
AlwI GGATC 2 cut(s) 12, 15
Ama87I CYCGRG 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 99, 108
BbvI GCAGC 1 cut(s) 178
BfaI CTAG 2 cut(s) 47, 188
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 143
BseMII CTCAG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 99, 108
BsiHKCI CYCGRG 1 cut(s) 92
BsmI GAATGC 2 cut(s) 194, 270
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 99, 108
Bsp143I GATC 5 cut(s) 4, 20, 34, 216, 259
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 9
BspPI GGATC 2 cut(s) 12, 15
BssMI GATC 5 cut(s) 4, 20, 34, 216, 259
BssNAI GTATAC 1 cut(s) 140
Bst1107I GTATAC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 14, 165
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 5 cut(s) 7, 23, 37, 219, 262
BstMBI GATC 5 cut(s) 4, 20, 34, 216, 259
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 210
BstSNI TACGTA 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 2 cut(s) 4, 20
BstYI RGATCY 2 cut(s) 4, 20
BstZ17I GTATAC 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 14, 165
CviAII CATG 1 cut(s) 25
CviJI RGCY 5 cut(s) 12, 106, 163, 191, 201
CviKI_1 RGCY 5 cut(s) 12, 106, 163, 191, 201
DdeI CTNAG 1 cut(s) 17
DpnI GATC 5 cut(s) 6, 22, 36, 218, 261
DpnII GATC 5 cut(s) 4, 20, 34, 216, 259
Ecl136II GAGCTC 1 cut(s) 106
Eco105I TACGTA 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 26, 140
FatI CATG 1 cut(s) 24
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 47, 188
GluI GCNGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 161
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 4 cut(s) 32, 47, 92, 220
Hpy8I GTNNAC 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 121, 248
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 5 cut(s) 4, 20, 34, 216, 259
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 104, 187
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 2 cut(s) 47, 188
MaeII ACGT 1 cut(s) 142
MalI GATC 5 cut(s) 6, 22, 36, 218, 261
MboI GATC 5 cut(s) 4, 20, 34, 216, 259
MflI RGATCY 2 cut(s) 4, 20
MhlI GDGCHC 2 cut(s) 99, 108
MluCI AATT 1 cut(s) 68
MnlI CCTC 2 cut(s) 49, 52
MseI TTAA 4 cut(s) 42, 156, 248, 274
MspA1I CMGCKG 1 cut(s) 201
Mva1269I GAATGC 2 cut(s) 194, 270
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 5 cut(s) 4, 20, 34, 216, 259
NlaIII CATG 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 92
PctI GAATGC 2 cut(s) 194, 270
PkrI GCNGC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 108
PsuI RGATCY 2 cut(s) 4, 20
PvuI CGATCG 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 42, 156, 248, 274
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 5 cut(s) 4, 20, 34, 216, 259
SduI GDGCHC 2 cut(s) 99, 108
SetI ASST 7 cut(s) 63, 108, 145, 165, 193, 203, 240
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 143
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 47, 188
SstI GAGCTC 1 cut(s) 108
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 33, 93, 219, 262
TasI AATT 1 cut(s) 68
Tru1I TTAA 4 cut(s) 42, 156, 248, 274
Tru9I TTAA 4 cut(s) 42, 156, 248, 274
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 262
XbaI TCTAGA 1 cut(s) 46
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 2 cut(s) 47, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.