Rmu_sc0002773.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002773.1
OG0000349
Physical Location & Seq
Forward (+)
1 .. 1752
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002773.1_g000001.1.cds

Sequence Viewer

Length: 472 bp
gagtaaggctgtaaagctgcttggatcagcgccgaatgtgaagtgtgctaatgtgcaaaattggtggttcaagttgctgacatcaaaggattctttcccaaaaacttttacgctccacaacctcagcctcttagagctacggacagggtatactcaatatgatctggttggcatggctgcagtacttgaactttgtcccaatcttgagacaatgattcttgattaccttcgcaagatagaagttgatgagagtttaccagaagagatcttaaataaaccagttagattcaatatgccaagactcaagcaagttaagatgctgaaattttttggatcggaagatgaaaataattttgtgactttgttgaaaaagcaaggagttgtcttacaaaagattacactttttcctatcaaagtcgaggggaactcatgccaccaatatcctccaatagttctacgtagaaacccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

156

Amino Acids

17.94

Weight (kDa)

9.28

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AclWI GGATC 2 cut(s) 32, 341
AcsI RAATTY 1 cut(s) 324
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 4 cut(s) 71, 189, 290, 368
AluBI AGCT 2 cut(s) 17, 137
AluI AGCT 2 cut(s) 17, 137
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 32, 341
ApeKI GCWGC 2 cut(s) 17, 177
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 4, 164
BcoDI GTCTC 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 33
BglII AGATCT 1 cut(s) 265
BisI GCNGC 2 cut(s) 18, 178
BlsI GCNGC 2 cut(s) 19, 179
BmcAI AGTACT 1 cut(s) 184
BmsI GCATC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 411, 443
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 225, 288
BsaAI YACGTR 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 4, 164
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 181
Bsp143I GATC 4 cut(s) 24, 161, 265, 333
BspCNI CTCAG 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 2 cut(s) 32, 341
BsrI ACTGG 1 cut(s) 279
BssMI GATC 4 cut(s) 24, 161, 265, 333
BssNAI GTATAC 1 cut(s) 151
Bst1107I GTATAC 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 123, 131
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 27, 164, 268, 336
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 4 cut(s) 24, 161, 265, 333
BstSFI CTRYAG 1 cut(s) 178
BstSNI TACGTA 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 4, 164
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 151
CfoI GCGC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 2 cut(s) 173, 430
CviJI RGCY 5 cut(s) 9, 17, 127, 137, 177
CviKI_1 RGCY 5 cut(s) 9, 17, 127, 137, 177
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 123, 131
DpnI GATC 4 cut(s) 26, 163, 267, 335
DpnII GATC 4 cut(s) 24, 161, 265, 333
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Eco105I TACGTA 1 cut(s) 459
FaeI CATG 2 cut(s) 176, 433
FaiI YATR 5 cut(s) 151, 160, 174, 294, 431
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 172, 429
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 18, 178
Fsp4HI GCNGC 2 cut(s) 18, 178
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 18, 178
HaeII RGCGCY 1 cut(s) 33
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 176, 433
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 4 cut(s) 90, 215, 286, 301
Hpy166II GTNNAC 2 cut(s) 151, 255
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 2 cut(s) 204, 219
Hpy8I GTNNAC 2 cut(s) 151, 255
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 2 cut(s) 56, 180
HpyF3I CTNAG 2 cut(s) 123, 131
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 2 cut(s) 176, 433
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 4 cut(s) 24, 161, 265, 333
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 130, 150, 271, 292
Lsp1109I GCAGC 2 cut(s) 4, 164
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 356
MalI GATC 4 cut(s) 26, 163, 267, 335
MboI GATC 4 cut(s) 24, 161, 265, 333
MboII GAAGA 2 cut(s) 273, 351
MflI RGATCY 1 cut(s) 265
MluCI AATT 3 cut(s) 59, 324, 350
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 4 cut(s) 132, 138, 413, 454
MseI TTAA 2 cut(s) 270, 313
NdeII GATC 4 cut(s) 24, 161, 265, 333
NlaIII CATG 2 cut(s) 176, 433
NmuCI GTSAC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 90, 215, 286
PkrI GCNGC 2 cut(s) 19, 179
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Ppu21I YACGTR 1 cut(s) 459
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 2 cut(s) 270, 313
SatI GCNGC 2 cut(s) 18, 178
Sau3AI GATC 4 cut(s) 24, 161, 265, 333
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 1 cut(s) 295
SetI ASST 5 cut(s) 19, 124, 139, 229, 461
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 204, 303
SmoI CTYRAG 2 cut(s) 204, 303
SnaBI TACGTA 1 cut(s) 459
Sse9I AATT 3 cut(s) 59, 324, 350
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 418
TasI AATT 3 cut(s) 59, 324, 350
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 3 cut(s) 90, 215, 286
Tru1I TTAA 2 cut(s) 270, 313
Tru9I TTAA 2 cut(s) 270, 313
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 2 cut(s) 17, 177
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 155
XapI RAATTY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 150
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.