Rh3CG290600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000349
Physical Location & Seq
Reverse (-)
29468696 .. 29469253
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG290600.1

Sequence Viewer

Length: 558 bp
ATGGCGATCCTTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCAGGTCAACGACGCCGAACCCCTCCCATCACGAGCCACGGCTTCACCGAGTTCGTCAATCGCGCTCTCATTCTCCACCCCAATTCTCCGATCAAAACCTTCCGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACATCGACTCTTGGGTGCACTCCGTCGTCAAGCGCTTCCGGGTGCGTGAGCCTGACCTCGACTTCTTTATCGACAAAGAGTACCATCTCTGGAGTGAGGAAGATCGAGCCCCGTGTGGAGGCAGATTTCTCAGACTTTTGCTCACTGATTTTGCTAATTTCGAGGTTCGAGTCGCCGAGCTTCTGGTACTACAATGCCGTCTTCTGATCCTGTTTGGCAATGATGGTGGTTGGTCTGAGAAAGCTCCTCCGCCTCTGGAGGCTTCTTGCGGTGGTTCTGGTCTTTCGAGGCGAGTAAGGCGAGGTAAATACGACGGTGTGGTTGCAGAGGAAGGCAGTGGCGCACGAGGCCATGGCGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

9.15

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 3 cut(s) 157, 443, 462
AclWI GGATC 1 cut(s) 394
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 3 cut(s) 182, 275, 381
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 56, 311
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 373, 437
AluI AGCT 2 cut(s) 373, 437
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 541
ApaLI GTGCAC 1 cut(s) 209
AspLEI GCGC 3 cut(s) 119, 228, 536
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 2 cut(s) 85, 537
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 4 cut(s) 89, 285, 410, 545
BceAI ACGGC 2 cut(s) 109, 375
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 229
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 57, 233
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 57, 233
BpiI GAAGAC 1 cut(s) 386
BpmI CTGGAG 2 cut(s) 304, 470
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 91, 544
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 311
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 91, 544
BseLI CCNNNNNNNGG 2 cut(s) 56, 311
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 337, 420
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 2 cut(s) 56, 311
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 213, 304
Bsp143I GATC 4 cut(s) 6, 144, 295, 399
Bsp19I CCATGG 1 cut(s) 544
BspACI CCGC 3 cut(s) 157, 443, 462
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 2 cut(s) 336, 421
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 91, 544
BssMI GATC 4 cut(s) 6, 144, 295, 399
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 2 cut(s) 85, 537
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 2 cut(s) 85, 537
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 323, 429
BstDSI CCRYGG 2 cut(s) 91, 544
BstENI CCTNNNNNAGG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 3 cut(s) 119, 228, 536
BstKTI GATC 4 cut(s) 9, 147, 298, 402
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 6, 144, 295, 399
BstMWI GCNNNNNNNGC 2 cut(s) 490, 540
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 231
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 551
BsuRI GGCC 1 cut(s) 543
BtgI CCRYGG 2 cut(s) 91, 544
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 336, 535
CfoI GCGC 3 cut(s) 119, 228, 536
Cfr13I GGNCC 1 cut(s) 16
CseI GACGC 1 cut(s) 75
Csp6I GTAC 3 cut(s) 181, 274, 380
CspCI CAANNNNNGTGG 2 cut(s) 400, 435
CviAII CATG 1 cut(s) 545
CviJI RGCY 8 cut(s) 90, 96, 244, 302, 373, 437, 455, 543
CviKI_1 RGCY 8 cut(s) 90, 96, 244, 302, 373, 437, 455, 543
CviQI GTAC 3 cut(s) 181, 274, 380
DdeI CTNAG 2 cut(s) 323, 429
DpnI GATC 4 cut(s) 8, 146, 297, 401
DpnII GATC 4 cut(s) 6, 144, 295, 399
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
EciI GGCGGA 2 cut(s) 146, 432
Eco130I CCWWGG 1 cut(s) 544
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 16
Eco47III AGCGCT 1 cut(s) 227
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 548
FaiI YATR 1 cut(s) 546
FaqI GGGAC 1 cut(s) 2
FatI CATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 304
GlaI GCGC 3 cut(s) 118, 227, 535
GsuI CTGGAG 2 cut(s) 304, 470
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 232
HgaI GACGC 1 cut(s) 75
HhaI GCGC 3 cut(s) 119, 228, 536
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 1 cut(s) 548
Hin6I GCGC 3 cut(s) 117, 226, 534
HinP1I GCGC 3 cut(s) 117, 226, 534
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 2 cut(s) 200, 363
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 62, 211
Hpy188I TCNGA 4 cut(s) 144, 326, 399, 430
Hpy188III TCNNGA 3 cut(s) 85, 283, 449
Hpy8I GTNNAC 2 cut(s) 62, 211
Hpy99I CGWCG 3 cut(s) 69, 221, 509
HpyAV CCTTC 4 cut(s) 20, 38, 163, 518
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 211, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 490, 540
HpyF3I CTNAG 2 cut(s) 323, 429
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 1 cut(s) 548
HspAI GCGC 3 cut(s) 117, 226, 534
Kzo9I GATC 4 cut(s) 6, 144, 295, 399
LmnI GCTCC 1 cut(s) 442
MalI GATC 4 cut(s) 8, 146, 297, 401
MboI GATC 4 cut(s) 6, 144, 295, 399
MboII GAAGA 4 cut(s) 44, 163, 305, 386
MhlI GDGCHC 2 cut(s) 213, 304
MluCI AATT 2 cut(s) 136, 349
MlyI GAGTC 2 cut(s) 194, 372
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 2 cut(s) 57, 233
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 490, 540
NciI CCSGG 1 cut(s) 233
NcoI CCATGG 1 cut(s) 544
NdeII GATC 4 cut(s) 6, 144, 295, 399
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PleI GAGTC 2 cut(s) 194, 371
PpsI GAGTC 2 cut(s) 194, 371
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 16
RsaI GTAC 3 cut(s) 182, 275, 381
RsaNI GTAC 3 cut(s) 181, 274, 380
RseI CAYNNNNRTG 1 cut(s) 549
Sau3AI GATC 4 cut(s) 6, 144, 295, 399
Sau96I GGNCC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 194, 372
ScrFI CCNGG 2 cut(s) 57, 233
SduI GDGCHC 2 cut(s) 213, 304
SetI ASST 9 cut(s) 52, 61, 155, 191, 252, 360, 375, 439, 499
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 2 cut(s) 136, 349
SsiI CCGC 3 cut(s) 157, 443, 462
StyD4I CCNGG 2 cut(s) 55, 231
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 509
TaqI TCGA 8 cut(s) 34, 198, 252, 264, 298, 354, 361, 479
TasI AATT 2 cut(s) 136, 349
TatI WGTACW 1 cut(s) 180
TscAI CASTG 2 cut(s) 343, 535
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 2 cut(s) 343, 535
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 16
XagI CCTNNNNNAGG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.