Rw3G021600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000349
Physical Location & Seq
Reverse (-)
26195797 .. 26197647
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021600.1

Sequence Viewer

Length: 663 bp
ATGTCAACGACGCCGAACCCCTCCCCGTCACGAGCCACGGCTTCGCCGAGTTCGTCAACCGCTCTCTCATTCGGCCTCTCTTTCATCTTCTACCAGTACTACACCTCCCACGTCGACCCTTGGGTGCGCTCCACCGTCACCCGCTTCCGGGTGCCTGAGCCTGACCTCGACTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATAGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCACGCGTCGATCTCGCGTTGCCGGCGAGCATGGCCATGGTGGGTGTGAGCTCGGTGAGTTCTATATGTCTCAGACCACATTAAATCAATCCAATATCCTTCTCATTGAGAGTTTCTTGCTGAAAGTGCCTCAGGAAATGGATCAGACACCATTTCTTCTTTTGCATTCACGGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCAGTTGACGGCGATGGTAGTTAAGGTCGATGGCGGCGAGAACCGACGCCTGTTCGTCGAGGTTCCAGCCCATAGCGGCTTGGGCCTGGGCAAGCCAGTTGCTGGTGACGACCCCGTGGTAGGCAGCCTGAGTCTGGTAGTAGCGAAGTTGACATTGGGGCTTTGCAGGGCAGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

220

Amino Acids

24.9

Weight (kDa)

5.9

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccB7I CCANNNNNTGG 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 114
AccII CGCG 3 cut(s) 223, 283, 294
AciI CCGC 5 cut(s) 60, 142, 221, 516, 558
AclWI GGATC 1 cut(s) 426
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 2 cut(s) 11, 529
AfaI GTAC 2 cut(s) 98, 191
AfiI CCNNNNNNNGG 5 cut(s) 147, 148, 584, 602, 616
AflIII ACRYGT 1 cut(s) 281
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 426
AlwNI CAGNNNCTG 1 cut(s) 584
AoxI GGCC 3 cut(s) 73, 310, 565
ApeKI GCWGC 1 cut(s) 606
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 565
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 130, 344, 599
AxyI CCTNAGG 1 cut(s) 408
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 2 cut(s) 220, 330
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 618
BccI CCATC 3 cut(s) 201, 490, 506
BceAI ACGGC 3 cut(s) 54, 277, 507
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 351
BisI GCNGC 3 cut(s) 517, 559, 607
BlsI GCNGC 3 cut(s) 518, 560, 608
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 149, 569
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 2 cut(s) 153, 546
BmrFI CCNGG 2 cut(s) 149, 569
BmsI GCATC 1 cut(s) 471
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 11, 529
BsaJI CCNNGG 5 cut(s) 36, 119, 313, 568, 597
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 148, 584, 602, 616
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 94, 578
Bse21I CCTNAGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 5 cut(s) 36, 119, 313, 568, 597
BseLI CCNNNNNNNGG 5 cut(s) 147, 148, 584, 602, 616
BseMII CTCAG 5 cut(s) 147, 245, 362, 422, 602
BseNI ACTGG 2 cut(s) 94, 578
BseXI GCAGC 1 cut(s) 618
Bsh1236I CGCG 3 cut(s) 223, 283, 294
BshFI GGCC 3 cut(s) 75, 312, 567
BshNI GGYRCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 2 cut(s) 148, 300
BslI CCNNNNNNNGG 5 cut(s) 147, 148, 584, 602, 616
BsmAI GTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 3 cut(s) 75, 312, 567
Bsp1286I GDGCHC 2 cut(s) 220, 330
Bsp143I GATC 2 cut(s) 287, 418
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 5 cut(s) 60, 142, 221, 516, 558
BspANI GGCC 3 cut(s) 75, 312, 567
BspCNI CTCAG 5 cut(s) 148, 246, 361, 421, 603
BspFNI CGCG 3 cut(s) 223, 283, 294
BspLI GGNNCC 2 cut(s) 153, 546
BspPI GGATC 1 cut(s) 426
BspT107I GGYRCC 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 2 cut(s) 94, 578
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 5 cut(s) 36, 119, 313, 568, 597
BssMI GATC 2 cut(s) 287, 418
BssNI GRCGYC 2 cut(s) 11, 529
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 119, 313
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 2 cut(s) 11, 529
BstC8I GCNNGC 3 cut(s) 301, 305, 575
BstDEI CTNAG 5 cut(s) 156, 254, 348, 408, 611
BstDSI CCRYGG 3 cut(s) 36, 313, 597
BstFNI CGCG 3 cut(s) 223, 283, 294
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 290, 421
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 2 cut(s) 287, 418
BstMWI GCNNNNNNNGC 4 cut(s) 300, 309, 403, 564
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 147, 567
BstUI CGCG 3 cut(s) 223, 283, 294
BstV1I GCAGC 1 cut(s) 618
Bsu36I CCTNAGG 1 cut(s) 408
BsuRI GGCC 3 cut(s) 75, 312, 567
BtgI CCRYGG 3 cut(s) 36, 313, 597
BtgZI GCGATG 1 cut(s) 509
BtrI CACGTC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 301, 305, 575
CaiI CAGNNNCTG 1 cut(s) 584
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 565
CseI GACGC 3 cut(s) 19, 272, 537
Csp6I GTAC 2 cut(s) 97, 190
CviAII CATG 2 cut(s) 308, 314
CviQI GTAC 2 cut(s) 97, 190
DdeI CTNAG 5 cut(s) 156, 254, 348, 408, 611
DpnI GATC 2 cut(s) 289, 420
DpnII GATC 2 cut(s) 287, 418
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 119, 313
Eco24I GRGCYC 2 cut(s) 220, 330
Eco53kI GAGCTC 1 cut(s) 328
Eco81I CCTNAGG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 2 cut(s) 119, 313
EcoT38I GRGCYC 2 cut(s) 220, 330
ErhI CCWWGG 2 cut(s) 119, 313
FaeI CATG 2 cut(s) 311, 317
FaiI YATR 6 cut(s) 234, 309, 315, 342, 344, 555
FatI CATG 2 cut(s) 307, 313
FauI CCCGC 2 cut(s) 149, 228
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 517, 559, 607
FriOI GRGCYC 2 cut(s) 220, 330
Fsp4HI GCNGC 3 cut(s) 517, 559, 607
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 517, 559, 607
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 3 cut(s) 75, 312, 567
HapII CCGG 2 cut(s) 148, 300
HgaI GACGC 3 cut(s) 19, 272, 537
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 11, 529
Hin1II CATG 2 cut(s) 311, 317
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 5 cut(s) 6, 57, 115, 489, 633
HindII GTYRAC 5 cut(s) 6, 57, 115, 489, 633
HinfI GANTC 1 cut(s) 613
HpaII CCGG 2 cut(s) 148, 300
HphI GGTGA 3 cut(s) 130, 344, 599
Hpy166II GTNNAC 5 cut(s) 6, 57, 115, 489, 633
Hpy188I TCNGA 2 cut(s) 351, 423
Hpy188III TCNNGA 3 cut(s) 30, 199, 410
Hpy8I GTNNAC 5 cut(s) 6, 57, 115, 489, 633
Hpy99I CGWCG 5 cut(s) 13, 116, 288, 531, 542
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 442, 484, 648
HpyF10VI GCNNNNNNNGC 4 cut(s) 300, 309, 403, 564
HpyF3I CTNAG 5 cut(s) 156, 254, 348, 408, 611
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 11, 529
Hsp92II CATG 2 cut(s) 311, 317
HspAI GCGC 1 cut(s) 127
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 287, 418
LmnI GCTCC 2 cut(s) 134, 201
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 1 cut(s) 471
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 4 cut(s) 27, 136, 224, 587
MalI GATC 2 cut(s) 289, 420
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 287, 418
MboII GAAGA 5 cut(s) 79, 166, 221, 425, 464
MhlI GDGCHC 2 cut(s) 220, 330
MlsI TGGCCA 1 cut(s) 312
MluI ACGCGT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 622
MnlI CCTC 8 cut(s) 31, 86, 115, 176, 199, 267, 417, 535
Mox20I TGGCCA 1 cut(s) 312
MroNI GCCGGC 1 cut(s) 299
MscI TGGCCA 1 cut(s) 312
MseI TTAA 2 cut(s) 359, 504
MslI CAYNNNNRTG 1 cut(s) 312
Msp20I TGGCCA 1 cut(s) 312
MspI CCGG 2 cut(s) 148, 300
MspR9I CCNGG 2 cut(s) 149, 569
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 3 cut(s) 223, 283, 294
MwoI GCNNNNNNNGC 4 cut(s) 300, 309, 403, 564
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 313
NdeII GATC 2 cut(s) 287, 418
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 2 cut(s) 311, 317
NlaIV GGNNCC 2 cut(s) 153, 546
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 4 cut(s) 27, 136, 224, 587
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 50, 516
PctI GAATGC 1 cut(s) 442
PdiI GCCGGC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 3 cut(s) 518, 560, 608
PleI GAGTC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 2 cut(s) 153, 546
PspPI GGNCC 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 584
RsaI GTAC 2 cut(s) 98, 191
RsaNI GTAC 2 cut(s) 97, 190
RseI CAYNNNNRTG 1 cut(s) 312
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 359, 504
SatI GCNGC 3 cut(s) 517, 559, 607
Sau3AI GATC 2 cut(s) 287, 418
Sau96I GGNCC 1 cut(s) 565
ScaI AGTACT 1 cut(s) 98
SchI GAGTC 1 cut(s) 622
ScrFI CCNGG 2 cut(s) 149, 569
SduI GDGCHC 2 cut(s) 220, 330
SetI ASST 6 cut(s) 107, 114, 168, 330, 510, 546
SfaNI GCATC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 312
SsiI CCGC 5 cut(s) 60, 142, 221, 516, 558
SstI GAGCTC 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 147, 567
StyI CCWWGG 2 cut(s) 119, 313
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 114
TaqI TCGA 6 cut(s) 114, 168, 180, 286, 510, 540
TatI WGTACW 1 cut(s) 96
TauI GCSGC 2 cut(s) 519, 561
Tru1I TTAA 2 cut(s) 359, 504
Tru9I TTAA 2 cut(s) 359, 504
TseFI GTSAC 4 cut(s) 27, 136, 224, 587
TseI GCWGC 1 cut(s) 606
Tsp45I GTSAC 4 cut(s) 27, 136, 224, 587
TspDTI ATGAA 2 cut(s) 73, 166
Van91I CCANNNNNTGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.