Rroxscaffold_2G00089450

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000349
Physical Location & Seq
Reverse (-)
11447525 .. 11449453
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089450.1

Sequence Viewer

Length: 324 bp
ATGGCTTTGGTTCAACCATGGCGAGTCTTGGAGGTTCCTCTTCGTCCTCGTGAATTGAACGTGCAGGAGAGTTTACCAGAAGAGATCTTAAATAAACCAGTTAGATTCAATATGCCAAGACTCAAGCAAGTTAAGATGCTGAAATTTTTTGGATCGGAAGATGAAAATAATTTTGTGACTTTGTTGAAAAAGCAAGGAGTTGTCTTACAAAAATTTGCACTTTTTCCTATCAAAGTCGAGGGGAACTCATGCCACCAATATCCTCCAATAGTTCTATGTAGAAACCCTCGAGAATGTGAAGTGACAGGATCTTCTCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

107

Amino Acids

12.36

Weight (kDa)

9.18

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 160, 316
AcsI RAATTY 2 cut(s) 143, 212
AgsI TTSAA 4 cut(s) 14, 58, 109, 187
AlwI GGATC 2 cut(s) 160, 316
Ama87I CYCGRG 1 cut(s) 288
ApoI RAATTY 2 cut(s) 143, 212
AvaI CYCGRG 1 cut(s) 288
BauI CACGAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 83
BsiHKCI CYCGRG 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 288
Bsp143I GATC 3 cut(s) 84, 152, 308
Bsp19I CCATGG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 160, 316
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 84, 152, 308
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 48
Bst6I CTCTTC 2 cut(s) 45, 75
BstDSI CCRYGG 1 cut(s) 17
BstKTI GATC 3 cut(s) 87, 155, 311
BstMBI GATC 3 cut(s) 84, 152, 308
BstX2I RGATCY 2 cut(s) 84, 308
BstYI RGATCY 2 cut(s) 84, 308
BtgI CCRYGG 1 cut(s) 17
CviAII CATG 2 cut(s) 18, 249
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 3 cut(s) 86, 154, 310
DpnII GATC 3 cut(s) 84, 152, 308
Eam1104I CTCTTC 2 cut(s) 45, 75
EarI CTCTTC 2 cut(s) 45, 75
Eco130I CCWWGG 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 21, 252
FaiI YATR 5 cut(s) 19, 113, 250, 277, 322
FatI CATG 2 cut(s) 17, 248
Hin1II CATG 2 cut(s) 21, 252
HinfI GANTC 3 cut(s) 24, 105, 120
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 50, 290
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 64, 218
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 21, 252
Kzo9I GATC 3 cut(s) 84, 152, 308
LpnPI CCDG 4 cut(s) 50, 90, 111, 291
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 175, 301
MalI GATC 3 cut(s) 86, 154, 310
MboI GATC 3 cut(s) 84, 152, 308
MboII GAAGA 4 cut(s) 32, 92, 170, 303
MflI RGATCY 2 cut(s) 84, 308
MluCI AATT 4 cut(s) 53, 143, 169, 212
MlyI GAGTC 2 cut(s) 33, 114
MnlI CCTC 6 cut(s) 25, 48, 57, 232, 273, 297
MseI TTAA 2 cut(s) 89, 132
NcoI CCATGG 1 cut(s) 17
NdeII GATC 3 cut(s) 84, 152, 308
NlaIII CATG 2 cut(s) 21, 252
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 2 cut(s) 175, 301
PaeR7I CTCGAG 1 cut(s) 288
PfeI GAWTC 1 cut(s) 105
PleI GAGTC 2 cut(s) 32, 114
PpsI GAGTC 2 cut(s) 32, 114
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 2 cut(s) 84, 308
SaqAI TTAA 2 cut(s) 89, 132
Sau3AI GATC 3 cut(s) 84, 152, 308
SchI GAGTC 2 cut(s) 33, 114
SetI ASST 2 cut(s) 36, 63
SfaNI GCATC 1 cut(s) 126
Sfr274I CTCGAG 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 122, 288
SmoI CTYRAG 2 cut(s) 122, 288
Sse9I AATT 4 cut(s) 53, 143, 169, 212
StyI CCWWGG 1 cut(s) 17
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 237, 289
TasI AATT 4 cut(s) 53, 143, 169, 212
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 89, 132
Tru9I TTAA 2 cut(s) 89, 132
TseFI GTSAC 2 cut(s) 175, 301
Tsp45I GTSAC 2 cut(s) 175, 301
TspDTI ATGAA 1 cut(s) 177
XapI RAATTY 2 cut(s) 143, 212
XhoI CTCGAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.