Rmu_sc0030848.1_g000002

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030848.1
OG0000349
Physical Location & Seq
Reverse (-)
2687 .. 6362
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030848.1_g000002.1.cds

Sequence Viewer

Length: 1041 bp
atgtctgccatgaatctctgctcgctgaggtcaatttttatcgaacggattgatctgacggatcagatggtccgggatttggtttcggggtgtccgaatctcgaggacttggagcttcggagctgtgtgggtttgaagaatttgaatatatgtagcagtaggattaagaagctagcgcttgggtatgattatgatagtgagtccaagcagagcattgagattgattgcccaaatctttgttcgttgagttttagtgactgtagttctgctcagtttgtgcttaaggaagcgccggccctggttgagtttcgtgttgattttgcttgcttaactgataagtactttgatttgtggagtaagattgtgaggctactggagaaagcgcctcatgttgagaagcttaatgtgcaaaattggtggtataagcttctaatatcagaggatcctttccctaaagattttaagctcaataatctcaaccatttagagctacggactggccatactcaatatgatctggttggcatggctgcactgcttaaactttgtcccaatctccagacaatggttcttgattaccttgacacgatgaaagaagatgagaatttaccggaagagttcttaaatgaactagttgagttcaacatgccaaagctgaagaaagttacaatcatagcgtatactggaacagaagtgcaacttaattttgtgaccatcttgaaaaagcaaggagtaaagattgaacttgctaggatcctgaggctcgtgttggtggtggtgggagatatggtttactaccgctttgttggcggcgtttgggctatggcaggagtaatccaaaggcgatggcggcgtgaatctggaagtgtgacaatgataacggggatgcctaggttcaaggtggtcggaggagggtggatggaaataggttgttgggcagtggggtggcggtgtgcagcatggatgtcccttgctaggacgaaaggggttgggctaggtttcatgtttgttgggcccttgttggtgggcagttattactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

346

Amino Acids

39.4

Weight (kDa)

7.45

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 680
AciI CCGC 4 cut(s) 799, 810, 850, 949
AclWI GGATC 5 cut(s) 69, 437, 450, 748, 761
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 2 cut(s) 139, 604
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 1 cut(s) 341
AfeI AGCGCT 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 79, 565, 975
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 6 cut(s) 136, 145, 643, 721, 743, 898
AhlI ACTAGT 1 cut(s) 631
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AluBI AGCT 8 cut(s) 115, 123, 172, 400, 427, 466, 490, 655
AluI AGCT 8 cut(s) 115, 123, 172, 400, 427, 466, 490, 655
AlwI GGATC 5 cut(s) 69, 437, 450, 748, 761
Ama87I CYCGRG 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 177
AoxI GGCC 3 cut(s) 294, 499, 1013
ApaI GGGCCC 1 cut(s) 1017
ApeKI GCWGC 2 cut(s) 530, 956
ApoI RAATTY 2 cut(s) 139, 604
AspA2I CCTAGG 1 cut(s) 890
AspLEI GCGC 3 cut(s) 178, 292, 385
AspS9I GGNCC 4 cut(s) 70, 295, 1013, 1014
AsuC2I CCSGG 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 70
AvrII CCTAGG 1 cut(s) 890
AxyI CCTNAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 1017
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 2 cut(s) 442, 753
BanII GRGCYC 1 cut(s) 1017
BauI CACGAG 1 cut(s) 764
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 517, 968
BccI CCATC 4 cut(s) 61, 722, 840, 913
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 7 cut(s) 173, 632, 750, 891, 975, 995, 1039
BfmI CTRYAG 1 cut(s) 259
BfoI RGCGCY 3 cut(s) 179, 293, 386
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 4 cut(s) 531, 811, 851, 957
BlnI CCTAGG 1 cut(s) 890
BlsI GCNGC 4 cut(s) 532, 812, 852, 958
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 2 cut(s) 74, 299
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 4 cut(s) 70, 295, 1013, 1014
BmiI GGNNCC 3 cut(s) 444, 755, 1015
BmrFI CCNGG 2 cut(s) 74, 299
BmsI GCATC 1 cut(s) 876
BmtI GCTAGC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 395, 542
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 297, 890
BsaWI WCCGGW 1 cut(s) 610
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 565, 975
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 378, 502, 688
Bse21I CCTNAGG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 297, 890
BseGI GGATG 3 cut(s) 891, 924, 969
BseLI CCNNNNNNNGG 3 cut(s) 79, 565, 975
BseMII CTCAG 3 cut(s) 17, 284, 749
BseNI ACTGG 3 cut(s) 378, 502, 688
BseRI GAGGAG 1 cut(s) 924
BseSI GKGCMC 1 cut(s) 1017
BseXI GCAGC 2 cut(s) 517, 968
BsgI GTGCAG 2 cut(s) 516, 975
BshFI GGCC 3 cut(s) 296, 501, 1015
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 73, 293, 611
BslFI GGGAC 2 cut(s) 534, 952
BslI CCNNNNNNNGG 3 cut(s) 79, 565, 975
BsmFI GGGAC 2 cut(s) 534, 952
BsnI GGCC 3 cut(s) 296, 501, 1015
BsoBI CYCGRG 1 cut(s) 101
Bsp120I GGGCCC 1 cut(s) 1013
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp143I GATC 5 cut(s) 52, 61, 442, 514, 753
BspACI CCGC 4 cut(s) 799, 810, 850, 949
BspANI GGCC 3 cut(s) 296, 501, 1015
BspCNI CTCAG 3 cut(s) 18, 283, 750
BspLI GGNNCC 3 cut(s) 444, 755, 1015
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 5 cut(s) 69, 437, 450, 748, 761
BspTI CTTAAG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 3 cut(s) 378, 502, 688
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 297, 890
BssMI GATC 5 cut(s) 52, 61, 442, 514, 753
BssNAI GTATAC 1 cut(s) 681
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 890
Bst1107I GTATAC 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 609
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 23, 174, 294, 325
BstDEI CTNAG 3 cut(s) 26, 270, 758
BstF5I GGATG 3 cut(s) 891, 924, 969
BstH2I RGCGCY 3 cut(s) 179, 293, 386
BstHHI GCGC 3 cut(s) 178, 292, 385
BstKTI GATC 5 cut(s) 55, 64, 445, 517, 756
BstMBI GATC 5 cut(s) 52, 61, 442, 514, 753
BstMWI GCNNNNNNNGC 3 cut(s) 406, 807, 850
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 2 cut(s) 72, 297
BstSFI CTRYAG 1 cut(s) 259
BstSLI GKGCMC 1 cut(s) 1017
BstV1I GCAGC 2 cut(s) 517, 968
BstX2I RGATCY 2 cut(s) 442, 753
BstYI RGATCY 2 cut(s) 442, 753
BstZ17I GTATAC 1 cut(s) 681
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 3 cut(s) 296, 501, 1015
BtgZI GCGATG 1 cut(s) 859
BtsCI GGATG 3 cut(s) 891, 924, 969
BtsI GCAGTG 2 cut(s) 533, 945
BtsIMutI CAGTG 2 cut(s) 533, 945
Cac8I GCNNGC 4 cut(s) 23, 174, 294, 325
CfoI GCGC 3 cut(s) 178, 292, 385
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 4 cut(s) 70, 295, 1013, 1014
Csp6I GTAC 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 6 cut(s) 10, 389, 526, 646, 960, 1003
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 3 cut(s) 26, 270, 758
DpnI GATC 5 cut(s) 54, 63, 444, 516, 755
DpnII GATC 5 cut(s) 52, 61, 442, 514, 753
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 890
Eco24I GRGCYC 1 cut(s) 1017
Eco47I GGWCC 1 cut(s) 70
Eco47III AGCGCT 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 677
Eco81I CCTNAGG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 1014
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 890
EcoT38I GRGCYC 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 890
FaeI CATG 6 cut(s) 13, 392, 529, 649, 963, 1006
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 2 cut(s) 534, 952
FatI CATG 6 cut(s) 9, 388, 525, 645, 959, 1002
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 4 cut(s) 531, 811, 851, 957
FokI GGATG 3 cut(s) 898, 931, 976
FriOI GRGCYC 1 cut(s) 1017
Fsp4HI GCNGC 4 cut(s) 531, 811, 851, 957
FspBI CTAG 7 cut(s) 173, 632, 750, 891, 975, 995, 1039
GlaI GCGC 3 cut(s) 177, 291, 384
GluI GCNGC 4 cut(s) 531, 811, 851, 957
GsuI CTGGAG 2 cut(s) 395, 542
HaeII RGCGCY 3 cut(s) 179, 293, 386
HaeIII GGCC 3 cut(s) 296, 501, 1015
HapII CCGG 3 cut(s) 73, 293, 611
HhaI GCGC 3 cut(s) 178, 292, 385
Hin1II CATG 6 cut(s) 13, 392, 529, 649, 963, 1006
Hin6I GCGC 3 cut(s) 176, 290, 383
HinP1I GCGC 3 cut(s) 176, 290, 383
HindIII AAGCTT 2 cut(s) 398, 425
HinfI GANTC 4 cut(s) 13, 97, 200, 857
HpaII CCGG 3 cut(s) 73, 293, 611
Hpy166II GTNNAC 2 cut(s) 681, 793
Hpy188I TCNGA 6 cut(s) 57, 66, 96, 120, 439, 908
Hpy188III TCNNGA 6 cut(s) 101, 559, 572, 718, 757, 861
Hpy8I GTNNAC 2 cut(s) 681, 793
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 4 cut(s) 409, 533, 697, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 807, 850
HpyF3I CTNAG 3 cut(s) 26, 270, 758
Hsp92II CATG 6 cut(s) 13, 392, 529, 649, 963, 1006
HspAI GCGC 3 cut(s) 176, 290, 383
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 52, 61, 442, 514, 753
LmnI GCTCC 2 cut(s) 112, 120
Lsp1109I GCAGC 2 cut(s) 517, 968
LweI GCATC 1 cut(s) 876
MaeI CTAG 7 cut(s) 173, 632, 750, 891, 975, 995, 1039
MaeIII GTNAC 4 cut(s) 254, 664, 709, 868
MalI GATC 5 cut(s) 54, 63, 444, 516, 755
MboI GATC 5 cut(s) 52, 61, 442, 514, 753
MboII GAAGA 4 cut(s) 148, 608, 626, 670
MflI RGATCY 2 cut(s) 442, 753
MhlI GDGCHC 1 cut(s) 1017
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 5 cut(s) 33, 139, 412, 604, 703
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 886
MnlI CCTC 8 cut(s) 21, 97, 360, 396, 433, 753, 902, 905
Mox20I TGGCCA 1 cut(s) 501
MroNI GCCGGC 1 cut(s) 292
MscI TGGCCA 1 cut(s) 501
MseI TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
Msp20I TGGCCA 1 cut(s) 501
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 3 cut(s) 73, 293, 611
MspR9I CCNGG 2 cut(s) 74, 299
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 406, 807, 850
NaeI GCCGGC 1 cut(s) 294
NciI CCSGG 1 cut(s) 74
NdeII GATC 5 cut(s) 52, 61, 442, 514, 753
NgoMIV GCCGGC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 6 cut(s) 13, 392, 529, 649, 963, 1006
NlaIV GGNNCC 3 cut(s) 444, 755, 1015
NmuCI GTSAC 3 cut(s) 254, 709, 868
NspI RCATGY 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 101
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 294
PfeI GAWTC 3 cut(s) 13, 97, 857
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 4 cut(s) 532, 812, 852, 958
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 444, 755, 1015
PspOMI GGGCCC 1 cut(s) 1013
PspPI GGNCC 4 cut(s) 70, 295, 1013, 1014
PsuI RGATCY 2 cut(s) 442, 753
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
SatI GCNGC 4 cut(s) 531, 811, 851, 957
Sau3AI GATC 5 cut(s) 52, 61, 442, 514, 753
Sau96I GGNCC 4 cut(s) 70, 295, 1013, 1014
ScaI AGTACT 1 cut(s) 341
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 74, 299
SduI GDGCHC 1 cut(s) 1017
SfaNI GCATC 1 cut(s) 876
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 101, 281
SmoI CTYRAG 2 cut(s) 101, 281
SpeI ACTAGT 1 cut(s) 631
Sse9I AATT 5 cut(s) 33, 139, 412, 604, 703
SsiI CCGC 4 cut(s) 799, 810, 850, 949
SspMI CTAG 7 cut(s) 173, 632, 750, 891, 975, 995, 1039
StyD4I CCNGG 2 cut(s) 72, 297
StyI CCWWGG 1 cut(s) 890
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 2 cut(s) 42, 102
TasI AATT 5 cut(s) 33, 139, 412, 604, 703
TatI WGTACW 1 cut(s) 339
TauI GCSGC 2 cut(s) 813, 853
TfiI GAWTC 3 cut(s) 13, 97, 857
Tru1I TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
Tru9I TTAA 8 cut(s) 165, 282, 329, 402, 462, 540, 623, 702
TscAI CASTG 2 cut(s) 540, 945
TseFI GTSAC 3 cut(s) 254, 709, 868
TseI GCWGC 2 cut(s) 530, 956
Tsp45I GTSAC 3 cut(s) 254, 709, 868
TspDTI ATGAA 4 cut(s) 26, 605, 642, 991
TspGWI ACGGA 3 cut(s) 61, 74, 508
TspRI CASTG 2 cut(s) 540, 945
Van91I CCANNNNNTGG 1 cut(s) 565
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 139, 604
XceI RCATGY 1 cut(s) 649
XhoI CTCGAG 1 cut(s) 101
XmaJI CCTAGG 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 7 cut(s) 173, 632, 750, 891, 975, 995, 1039
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.