Rmu_sc0030848.1_g000001

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030848.1
OG0000349
Physical Location & Seq
Reverse (-)
2 .. 475
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030848.1_g000001.1.cds

Sequence Viewer

Length: 474 bp
atgccaaacccgagtctgggccttgggcccaaacccgaactatccgtcggcctttgtcagttgcagaagcaattctacaataaagcaccatttctcagaaaatccaggaaacccaaaaccccaatggaagcgacgacgatgactaatcggaaccctaatcgaagcctaaacgacctccccgacgaaatcctcctccacatcctgagcttcttcccgaccctcgacgccgtccagacctccctaatctcccgcaaatggcgacccctctggtcccgcctccgcttgctcaaattctcctacgagcacttccccctaaacgacccgccatccgataaccgcgacttcttcgccgagttcgtcgaccgcgccctcattctccggccccactcccccatcgacctcttctccctctccttcatctaccacgaccgcttcggcttccacgtcgactcctgggtccgctgcgccgtcacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

158

Amino Acids

18.44

Weight (kDa)

9.64

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccI GTMKAC 2 cut(s) 360, 447
AccII CGCG 2 cut(s) 339, 366
AciI CCGC 8 cut(s) 250, 274, 280, 323, 337, 364, 430, 460
AcsI RAATTY 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 16, 17, 255
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 2 cut(s) 104, 452
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw21I GWGCWC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 4 cut(s) 19, 26, 49, 380
ApaI GGGCCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 368, 467
AspS9I GGNCC 6 cut(s) 19, 26, 27, 270, 381, 457
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 2 cut(s) 270, 457
BaeGI GKGCMC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 30
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 449
BccI CCATC 2 cut(s) 334, 401
BceAI ACGGC 2 cut(s) 212, 452
BciT130I CCWGG 2 cut(s) 106, 454
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 106, 454
Bme18I GGWCC 2 cut(s) 270, 457
BmeT110I CYCGRG 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 6 cut(s) 19, 26, 27, 270, 381, 457
BmiI GGNNCC 5 cut(s) 28, 152, 272, 383, 458
BmrFI CCNGG 2 cut(s) 106, 454
Bpu10I CCTNAGC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 22, 453
BsaXI ACNNNNNCTCC 4 cut(s) 389, 419, 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 17, 255
BseBI CCWGG 2 cut(s) 106, 454
BseDI CCNNGG 2 cut(s) 22, 453
BseGI GGATG 2 cut(s) 198, 326
BseLI CCNNNNNNNGG 3 cut(s) 16, 17, 255
BseMII CTCAG 2 cut(s) 109, 194
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 449
Bsh1236I CGCG 2 cut(s) 339, 366
Bsh1285I CGRYCG 2 cut(s) 364, 430
BshFI GGCC 4 cut(s) 21, 28, 51, 382
BsiEI CGRYCG 2 cut(s) 364, 430
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 16, 17, 255
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 4 cut(s) 21, 28, 51, 382
BsoBI CYCGRG 1 cut(s) 10
Bsp120I GGGCCC 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 30, 306
BspACI CCGC 8 cut(s) 250, 274, 280, 323, 337, 364, 430, 460
BspANI GGCC 4 cut(s) 21, 28, 51, 382
BspCNI CTCAG 2 cut(s) 108, 195
BspFNI CGCG 2 cut(s) 339, 366
BspLI GGNNCC 5 cut(s) 28, 152, 272, 383, 458
BssECI CCNNGG 2 cut(s) 22, 453
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 2 cut(s) 106, 454
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 95, 203
BstF5I GGATG 2 cut(s) 198, 326
BstFNI CGCG 2 cut(s) 339, 366
BstHHI GCGC 2 cut(s) 368, 467
BstMCI CGRYCG 2 cut(s) 364, 430
BstNI CCWGG 2 cut(s) 106, 454
BstSCI CCNGG 2 cut(s) 104, 452
BstSLI GKGCMC 1 cut(s) 30
BstUI CGCG 2 cut(s) 339, 366
BstV1I GCAGC 1 cut(s) 449
BsuRI GGCC 4 cut(s) 21, 28, 51, 382
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 2 cut(s) 198, 326
Cac8I GCNNGC 1 cut(s) 284
CfoI GCGC 2 cut(s) 368, 467
Cfr13I GGNCC 6 cut(s) 19, 26, 27, 270, 381, 457
CseI GACGC 1 cut(s) 233
CviJI RGCY 7 cut(s) 21, 28, 51, 165, 207, 382, 438
CviKI_1 RGCY 7 cut(s) 21, 28, 51, 165, 207, 382, 438
DdeI CTNAG 2 cut(s) 95, 203
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 270, 457
Eco88I CYCGRG 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 104, 452
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 22
FaqI GGGAC 1 cut(s) 256
FauI CCCGC 3 cut(s) 257, 281, 330
FblI GTMKAC 2 cut(s) 360, 447
Fnu4HI GCNGC 1 cut(s) 463
FokI GGATG 2 cut(s) 185, 313
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 463
GlaI GCGC 2 cut(s) 367, 466
GluI GCNGC 1 cut(s) 463
HaeIII GGCC 4 cut(s) 21, 28, 51, 382
HapII CCGG 1 cut(s) 379
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 368, 467
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 2 cut(s) 366, 465
HinP1I GCGC 2 cut(s) 366, 465
HincII GTYRAC 2 cut(s) 361, 448
HindII GTYRAC 2 cut(s) 361, 448
HinfI GANTC 2 cut(s) 13, 449
HpaII CCGG 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 361, 448
Hpy188I TCNGA 3 cut(s) 98, 150, 331
Hpy188III TCNNGA 3 cut(s) 202, 214, 232
Hpy8I GTNNAC 2 cut(s) 361, 448
Hpy99I CGWCG 7 cut(s) 50, 136, 139, 185, 227, 362, 449
HpyAV CCTTC 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 95, 203
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 2 cut(s) 366, 465
LpnPI CCDG 9 cut(s) 2, 91, 118, 215, 245, 253, 392, 439, 466
Lsp1109I GCAGC 1 cut(s) 449
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 469
MboII GAAGA 3 cut(s) 202, 337, 394
MhlI GDGCHC 2 cut(s) 30, 306
MluCI AATT 2 cut(s) 71, 290
MlyI GAGTC 2 cut(s) 22, 443
MroXI GAANNNNTTC 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 2 cut(s) 106, 454
MvaI CCWGG 2 cut(s) 106, 454
MvnI CGCG 2 cut(s) 339, 366
NlaIV GGNNCC 5 cut(s) 28, 152, 272, 383, 458
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 469
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 354, 441
PdmI GAANNNNTTC 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 1 cut(s) 464
PleI GAGTC 2 cut(s) 21, 443
PpsI GAGTC 2 cut(s) 21, 443
Psp6I CCWGG 2 cut(s) 104, 452
PspGI CCWGG 2 cut(s) 104, 452
PspN4I GGNNCC 5 cut(s) 28, 152, 272, 383, 458
PspOMI GGGCCC 1 cut(s) 26
PspPI GGNCC 6 cut(s) 19, 26, 27, 270, 381, 457
PsyI GACNNNGTC 1 cut(s) 227
SalI GTCGAC 2 cut(s) 359, 446
SatI GCNGC 1 cut(s) 463
Sau96I GGNCC 6 cut(s) 19, 26, 27, 270, 381, 457
SchI GAGTC 2 cut(s) 22, 443
ScrFI CCNGG 2 cut(s) 106, 454
SduI GDGCHC 2 cut(s) 30, 306
SetI ASST 5 cut(s) 177, 209, 239, 402, 447
SinI GGWCC 2 cut(s) 270, 457
Sse9I AATT 2 cut(s) 71, 290
SsiI CCGC 8 cut(s) 250, 274, 280, 323, 337, 364, 430, 460
StyD4I CCNGG 2 cut(s) 104, 452
StyI CCWWGG 1 cut(s) 22
TaiI ACGT 1 cut(s) 447
TaqI TCGA 5 cut(s) 160, 222, 360, 396, 447
TasI AATT 2 cut(s) 71, 290
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 270, 457
XapI RAATTY 1 cut(s) 290
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 2 cut(s) 360, 447
XmnI GAANNNNTTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.