Rh7DG170700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000349
Physical Location & Seq
Forward (+)
15268966 .. 15269727
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG170700.1

Sequence Viewer

Length: 762 bp
ATGAAAGAGACCCCAATTCCACCACCTCTTCCAAACTCTAATCAGAACCTAAACGACCTACCGCAGGAAGTCCTCGTCTATATCTTGTCCTTCCTCCCCACAATAGAGGCGATCCAGACCTCTCTCATTTCCAGGAAATGGCGAAACCTCTGGTTCTTTCTCACCTCTTTCAACTTCTCCTTCGAAACCTGCTTTCCTTACTTCGATAATCCTCTTCCTTTTTATACTCGCCGGATGACTCGACCCTTCGCCAACTTTGTGGATCGCGCTCTCACCACTCGCCCCGCCGATCCTGCCGTCCATTCCTTCCGTCTATCATTCATCTACGACTCCGATTACGAAGTTCGTGTCGAGTCTTGGATACGCACCGCCGTGACGCACCTCCAAGCCCGTGAGCTGCACCTCGACTTCTATATCGACTATGACTATGACTTCTCTGTTTACAAGTATGAATTCTTCTTCTCAGAGCTGAGAAATGGCTGCGTACAAGTATTGAAACTCACCAGTTGTAATATTACACTGCCGGACGACATGGATCTTGGCTTGCTGAGATCCATGTTTCTCGATCAGGTTAATCTAGAAGACGAGGAGGTGCGGAAATTGTTTTCGGGGTGTCCAAATCTCGAGCACTTTGAGCTCCGAAACTGTCTGGGGGTGAAGGGTTTGTTTATACGTAGCACCAAGCTTAAGAAGCTTGCTCTTGGATTTGTTCCTAATCTAGCTGCATTCGATCAGCTGGAACACTACAGAGATCGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

253

Amino Acids

29.88

Weight (kDa)

5.45

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 17 - 51 7.7e-09 F-box domain
F-box-like PF12937 17 - 50 6.6e-07 F-box-like
LRR_At1g61320_AtMIF1 PF23622 103 - 232 2.4e-11 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 118 - 234 2.3e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 138
AccII CGCG 1 cut(s) 267
AciI CCGC 4 cut(s) 62, 285, 369, 595
AclWI GGATC 5 cut(s) 106, 270, 284, 543, 546
AcsI RAATTY 1 cut(s) 452
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 2 cut(s) 64, 138
AflII CTTAAG 1 cut(s) 686
AgsI TTSAA 2 cut(s) 172, 496
AjnI CCWGG 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 7 cut(s) 397, 469, 637, 685, 694, 722, 736
AluI AGCT 7 cut(s) 397, 469, 637, 685, 694, 722, 736
Alw21I GWGCWC 2 cut(s) 630, 639
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 5 cut(s) 106, 270, 284, 543, 546
Ama87I CYCGRG 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 397, 480, 722
ApoI RAATTY 1 cut(s) 452
ArsI GACNNNNNNTTYG 2 cut(s) 333, 365
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 154, 265, 493, 667
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 623
BanII GRGCYC 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 2 cut(s) 630, 639
BbvI GCAGC 3 cut(s) 384, 467, 709
BceAI ACGGC 2 cut(s) 281, 356
BciT130I CCWGG 1 cut(s) 133
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 2 cut(s) 578, 719
BfmI CTRYAG 1 cut(s) 745
BfrI CTTAAG 1 cut(s) 686
BfuAI ACCTGC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 3 cut(s) 398, 481, 723
BlsI GCNGC 3 cut(s) 399, 482, 724
Bme1390I CCNGG 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 623
BmrFI CCNGG 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 588
Bpu14I TTCGAA 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 2
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 138
Bse1I ACTGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 64, 138
BseMII CTCAG 3 cut(s) 461, 477, 539
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 1 cut(s) 602
BseXI GCAGC 3 cut(s) 384, 467, 709
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 630, 639
BsiHKCI CYCGRG 1 cut(s) 623
BsiSI CCGG 2 cut(s) 232, 524
BslI CCNNNNNNNGG 2 cut(s) 64, 138
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 725
Bso31I GGTCTC 1 cut(s) 2
BsoBI CYCGRG 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 630, 639
Bsp143I GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
BspACI CCGC 4 cut(s) 62, 285, 369, 595
BspCNI CTCAG 3 cut(s) 462, 476, 540
BspFNI CGCG 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 5 cut(s) 106, 270, 284, 543, 546
BspT104I TTCGAA 1 cut(s) 183
BspTI CTTAAG 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 504
BssMI GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 2 cut(s) 33, 219
BstAFI CTTAAG 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 674
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 545, 696
BstDEI CTNAG 3 cut(s) 463, 470, 548
BstENI CCTNNNNNAGG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 8 cut(s) 114, 265, 292, 538, 554, 568, 733, 754
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
BstMWI GCNNNNNNNGC 3 cut(s) 293, 634, 691
BstNI CCWGG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 745
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 384, 467, 709
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 2 cut(s) 535, 551
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 2 cut(s) 535, 551
BsuI GTATCC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 518
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 545, 696
CfoI GCGC 1 cut(s) 269
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 485
CviAII CATG 2 cut(s) 532, 556
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 3 cut(s) 463, 470, 548
DpnI GATC 8 cut(s) 113, 264, 291, 537, 553, 567, 732, 753
DpnII GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
Eam1104I CTCTTC 2 cut(s) 33, 219
EarI CTCTTC 2 cut(s) 33, 219
Ecl136II GAGCTC 1 cut(s) 637
Eco105I TACGTA 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 2
Eco53kI GAGCTC 1 cut(s) 637
Eco88I CYCGRG 1 cut(s) 623
EcoICRI GAGCTC 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 639
FaeI CATG 2 cut(s) 535, 559
FaiI YATR 9 cut(s) 81, 225, 414, 423, 429, 450, 533, 557, 671
FatI CATG 2 cut(s) 531, 555
FauI CCCGC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 398, 481, 723
FokI GGATG 1 cut(s) 247
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 3 cut(s) 398, 481, 723
FspBI CTAG 2 cut(s) 578, 719
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 398, 481, 723
HapII CCGG 2 cut(s) 232, 524
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 269
Hin1II CATG 2 cut(s) 535, 559
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HindIII AAGCTT 2 cut(s) 683, 692
HinfI GANTC 3 cut(s) 238, 329, 353
HpaII CCGG 2 cut(s) 232, 524
HphI GGTGA 4 cut(s) 154, 265, 493, 667
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 4 cut(s) 45, 334, 466, 641
Hpy188III TCNNGA 5 cut(s) 115, 563, 578, 623, 755
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 5 cut(s) 100, 190, 256, 316, 652
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 2 cut(s) 400, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 634, 691
HpyF3I CTNAG 3 cut(s) 463, 470, 548
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 2 cut(s) 535, 559
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
LmnI GCTCC 1 cut(s) 642
Lsp1109I GCAGC 3 cut(s) 384, 467, 709
MaeI CTAG 2 cut(s) 578, 719
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 373
MalI GATC 8 cut(s) 113, 264, 291, 537, 553, 567, 732, 753
MboI GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
MboII GAAGA 5 cut(s) 20, 206, 448, 451, 593
MflI RGATCY 2 cut(s) 535, 551
MhlI GDGCHC 2 cut(s) 630, 639
MluCI AATT 3 cut(s) 15, 452, 599
MlyI GAGTC 3 cut(s) 232, 323, 362
MseI TTAA 2 cut(s) 573, 687
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 736
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 2 cut(s) 232, 524
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 293, 634, 691
NdeII GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
NlaIII CATG 2 cut(s) 535, 559
NmuCI GTSAC 1 cut(s) 373
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 623
PctI GAATGC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 3 cut(s) 399, 482, 724
PleI GAGTC 3 cut(s) 232, 323, 361
PpsI GAGTC 3 cut(s) 232, 323, 361
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 535, 551
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 573, 687
SatI GCNGC 3 cut(s) 398, 481, 723
Sau3AI GATC 8 cut(s) 111, 262, 289, 535, 551, 565, 730, 751
SchI GAGTC 3 cut(s) 232, 323, 362
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 2 cut(s) 630, 639
SfcI CTRYAG 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 623
SfuI TTCGAA 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 623, 686
SmoI CTYRAG 2 cut(s) 623, 686
SnaBI TACGTA 1 cut(s) 674
Sse9I AATT 3 cut(s) 15, 452, 599
SsiI CCGC 4 cut(s) 62, 285, 369, 595
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 578, 719
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 1 cut(s) 676
TasI AATT 3 cut(s) 15, 452, 599
Tru1I TTAA 2 cut(s) 573, 687
Tru9I TTAA 2 cut(s) 573, 687
TscAI CASTG 1 cut(s) 525
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 397, 480, 722
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 17, 310, 465
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 525
Van91I CCANNNNNTGG 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 686
XagI CCTNNNNNAGG 1 cut(s) 62
XapI RAATTY 1 cut(s) 452
XbaI TCTAGA 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 623
XspI CTAG 2 cut(s) 578, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.