Rroxscaffold_2G00089410

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000349
Physical Location & Seq
Reverse (-)
11425273 .. 11428693
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089410.1

Sequence Viewer

Length: 1605 bp
ATGGAAGCGACGACGATGACTAATCGGAACCCTAATCGAAGCCTAAACGATCTCCCCGACGAAATCCTCCTCCACATCCTGAGCTTCTTCCCGACCCTCGACGCCGTCCAGACCTCCCTAATCTCCCGCAAATGGCGACCCCTCTGGTCCCGCCTCCGCTTCCTCAAATTCTCCTACGAGCACTTCCCCCTAAACGACCCGCCGTCCGATAACCGCGACTTCTTCGCCGAGTTCGTCGACCGCGCCCTCATTCTCCGGCCCCACTCCCCCATCGACCTCTTCTCCCTCTCCTTCATCTACCACGACCGCTTCGGCTTCCACGTCGACTCCTGGGTCCGCTGCGCCGTCACGCTCCTCCACGCGCGTGAGCTCCACCTCGACTTCTTCATCGACCGGGAGTACCACCAGACCGACGAGACCTTCAACCACAAGTACGATTTCCCTTTCGCCGTCCTCAGAAATGGCGCCGTCCGAGTGCTGAAGCTCACGCGCGTCGACCTCACCTTGCCGGCGAGCATGGCCGCCATGGGGCTCGTCTCTCTGAGCTCAATGTATCTCGACGAGGTCTACTTGACGGACCAGATGGTGTGTGATTTGATATCGGGTTGTCCGAATCTCGAGGAATTGGAGCTTCAGAACTGTTGGGGGATGGAGAAGATGAAGATATGTAGTAAAAAGCTGAAGAAGCTGGCGTTTGCTTATATATATGATTCGGATAACAGGAACACGATTGAGATTGATTGCCCGAATTTGTGTTCGATAAGCTTTGATAACTGTAGTTTTACACAGTTTGTGCTTAAGTTTGCGCCGGCCCTGGTTCAGTTTAGTGTCAGCATTGTGAGGATAATGGAGCAGGACTATGGTTTGTGGAGCAGGATTGTGAGGCTACTTGAGCAAGCGCCTTATGTGAAGCAGCTTAATTTGCAAAATTGGTGGTTTAAGCTTCTTACATCAAAGGATCCTTTCTCCAAAAGTTTTAAGCTTCACAACCTCAACCACTTGGAGCTGCGAACAGGGTATACCCAATGTGATCTGATTGGCTTGGCAGCACTGCTTGAGCTTTCTCCGAATCTCGAGAACATGACTTTAGATTATGTTGACAATGATGTGGAAGATGGTATTTTACCAGAAGAGTTCTCAAATAAACCAGATGGATTCCACATGCCAAGTCTGAGGCAAGTGACCATGAAATCATATTCTGGAACACCAGATGAGAATAATTTTGTGAATATTTTGAAAAAGCATGGGGTGGTCCTAGAAAAGATAGTAATCCATCACATCAAAGTTGGTGAGAAATCATTTTCTCCGGTAGTTTTAAGAGTCTTCCCTCGCTTCACTCCTTTGTTTCTAACTAATGACGAGTTGGTTATGCATTTACTTTCGGGCTCTTCATTCCCTTGCCTCGGGAAATTGACCACAAACAAGTGCAAAGGAATAATGAGTACTCCTAGCTGTCCTGGGCATCTCAAAATTTGCTGTCCTAAGCTGAAAGATGTACAAGTTGTGAAGGTGGTAAATAATCTGGAGATATCTGGAATGGGATTGCAAGTCGAAGAATGCTTAAGCAATGGATCAACATCGCTGCCCCCAATCGAGAATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

534

Amino Acids

61.25

Weight (kDa)

6.11

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 56 4.1e-09 F-box domain
F-box-like PF12937 15 - 46 1.7e-06 F-box-like
LRR_At1g61320_AtMIF1 PF23622 84 - 397 8.7e-27 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 141 - 254 9e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 464
AccI GTMKAC 5 cut(s) 237, 324, 495, 567, 1019
AccII CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
AciI CCGC 9 cut(s) 127, 151, 157, 200, 214, 241, 307, 337, 522
AclWI GGATC 3 cut(s) 953, 966, 1579
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 3 cut(s) 167, 748, 1470
AcuI CTGAAG 3 cut(s) 500, 617, 701
AcyI GRCGYC 2 cut(s) 102, 465
AfaI GTAC 4 cut(s) 401, 434, 1444, 1497
AfiI CCNNNNNNNGG 3 cut(s) 132, 528, 1403
AflII CTTAAG 2 cut(s) 797, 1561
AgsI TTSAA 2 cut(s) 424, 1237
AhdI GACNNNNNGTC 1 cut(s) 202
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 3 cut(s) 329, 813, 1456
AleI CACNNNNGTG 1 cut(s) 363
Alw21I GWGCWC 3 cut(s) 183, 372, 548
Alw26I GTCTC 2 cut(s) 410, 541
AlwI GGATC 3 cut(s) 953, 966, 1579
Ama87I CYCGRG 3 cut(s) 617, 1073, 1403
AoxI GGCC 3 cut(s) 257, 519, 810
ApeKI GCWGC 5 cut(s) 339, 913, 1006, 1046, 1582
ApoI RAATTY 3 cut(s) 167, 748, 1470
AspLEI GCGC 7 cut(s) 245, 344, 364, 467, 492, 808, 901
AspS9I GGNCC 6 cut(s) 147, 258, 334, 577, 811, 1252
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 493, 1301
AvaI CYCGRG 3 cut(s) 617, 1073, 1403
AvaII GGWCC 4 cut(s) 147, 334, 577, 1252
BamHI GGATCC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 4 cut(s) 372, 534, 548, 1388
BbsI GAAGAC 1 cut(s) 1315
Bbv12I GWGCWC 3 cut(s) 183, 372, 548
BbvI GCAGC 5 cut(s) 326, 925, 993, 1058, 1569
BccI CCATC 6 cut(s) 278, 577, 643, 1109, 1145, 1281
BceAI ACGGC 5 cut(s) 89, 187, 329, 434, 452
BciT130I CCWGG 3 cut(s) 331, 815, 1458
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 410, 541
BfaI CTAG 3 cut(s) 1256, 1449, 1603
BfmI CTRYAG 1 cut(s) 775
BfoI RGCGCY 2 cut(s) 468, 902
BfrI CTTAAG 2 cut(s) 797, 1561
BisI GCNGC 6 cut(s) 340, 522, 914, 1007, 1047, 1583
BlsI GCNGC 6 cut(s) 341, 523, 915, 1008, 1048, 1584
BmcAI AGTACT 1 cut(s) 1444
Bme1390I CCNGG 4 cut(s) 331, 395, 815, 1458
Bme18I GGWCC 4 cut(s) 147, 334, 577, 1252
BmeRI GACNNNNNGTC 1 cut(s) 202
BmeT110I CYCGRG 3 cut(s) 617, 1073, 1403
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 6 cut(s) 147, 258, 334, 577, 811, 1252
BmiI GGNNCC 6 cut(s) 29, 149, 260, 335, 466, 960
BmrFI CCNGG 4 cut(s) 331, 395, 815, 1458
BmsI GCATC 1 cut(s) 1471
BpiI GAAGAC 1 cut(s) 1315
BpmI CTGGAG 1 cut(s) 1544
Bpu10I CCTNAGC 2 cut(s) 80, 1482
BpuEI CTTGAG 2 cut(s) 911, 1076
BpuMI CCSGG 1 cut(s) 395
BsaBI GATNNNNATC 2 cut(s) 1268, 1576
BsaHI GRCGYC 2 cut(s) 102, 465
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 5 cut(s) 330, 525, 813, 1402, 1457
BsaWI WCCGGW 1 cut(s) 1306
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 528, 1403
Bse118I RCCGGY 2 cut(s) 508, 808
Bse3DI GCAATG 1 cut(s) 1573
Bse8I GATNNNNATC 2 cut(s) 1268, 1576
BseBI CCWGG 3 cut(s) 331, 815, 1458
BseDI CCNNGG 5 cut(s) 330, 525, 813, 1402, 1457
BseGI GGATG 2 cut(s) 75, 654
BseJI GATNNNNATC 2 cut(s) 1268, 1576
BseLI CCNNNNNNNGG 3 cut(s) 132, 528, 1403
BseMI GCAATG 1 cut(s) 1573
BseMII CTCAG 4 cut(s) 71, 469, 533, 1163
BseRI GAGGAG 2 cut(s) 59, 344
BseXI GCAGC 5 cut(s) 326, 925, 993, 1058, 1569
Bsh1236I CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
Bsh1285I CGRYCG 3 cut(s) 241, 307, 394
BshFI GGCC 3 cut(s) 259, 521, 812
BshNI GGYRCC 1 cut(s) 464
BsiEI CGRYCG 3 cut(s) 241, 307, 394
BsiHKAI GWGCWC 3 cut(s) 183, 372, 548
BsiHKCI CYCGRG 3 cut(s) 617, 1073, 1403
BsiSI CCGG 5 cut(s) 256, 394, 509, 809, 1307
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 132, 528, 1403
BsmAI GTCTC 2 cut(s) 410, 541
BsmBI CGTCTC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 1562
BsnI GGCC 3 cut(s) 259, 521, 812
Bso31I GGTCTC 1 cut(s) 410
BsoBI CYCGRG 3 cut(s) 617, 1073, 1403
Bsp1286I GDGCHC 5 cut(s) 183, 372, 534, 548, 1388
Bsp1407I TGTACA 1 cut(s) 1495
Bsp143I GATC 4 cut(s) 49, 958, 1030, 1571
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 9 cut(s) 127, 151, 157, 200, 214, 241, 307, 337, 522
BspANI GGCC 3 cut(s) 259, 521, 812
BspCNI CTCAG 4 cut(s) 72, 468, 534, 1164
BspFNI CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
BspLI GGNNCC 6 cut(s) 29, 149, 260, 335, 466, 960
BspPI GGATC 3 cut(s) 953, 966, 1579
BspQI GCTCTTC 1 cut(s) 1393
BspT107I GGYRCC 1 cut(s) 464
BspTI CTTAAG 2 cut(s) 797, 1561
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 1573
BsrFI RCCGGY 2 cut(s) 508, 808
BsrGI TGTACA 1 cut(s) 1495
BssAI RCCGGY 2 cut(s) 508, 808
BssECI CCNNGG 5 cut(s) 330, 525, 813, 1402, 1457
BssMI GATC 4 cut(s) 49, 958, 1030, 1571
BssNAI GTATAC 1 cut(s) 1020
BssNI GRCGYC 2 cut(s) 102, 465
BssT1I CCWWGG 1 cut(s) 525
Bst1107I GTATAC 1 cut(s) 1020
Bst2UI CCWGG 3 cut(s) 331, 815, 1458
Bst4CI ACNGT 3 cut(s) 641, 776, 789
Bst6I CTCTTC 3 cut(s) 284, 1125, 1393
BstACI GRCGYC 2 cut(s) 102, 465
BstAFI CTTAAG 2 cut(s) 797, 1561
BstAUI TGTACA 1 cut(s) 1495
BstC8I GCNNGC 5 cut(s) 510, 514, 690, 810, 897
BstDEI CTNAG 5 cut(s) 80, 455, 542, 1172, 1482
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 75, 654
BstFNI CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
BstH2I RGCGCY 2 cut(s) 468, 902
BstHHI GCGC 7 cut(s) 245, 344, 364, 467, 492, 808, 901
BstKTI GATC 4 cut(s) 52, 961, 1033, 1574
BstMAI GTCTC 2 cut(s) 410, 541
BstMBI GATC 4 cut(s) 49, 958, 1030, 1571
BstMCI CGRYCG 3 cut(s) 241, 307, 394
BstMWI GCNNNNNNNGC 4 cut(s) 518, 685, 892, 922
BstNI CCWGG 3 cut(s) 331, 815, 1458
BstNSI RCATGY 1 cut(s) 1165
BstSCI CCNGG 4 cut(s) 329, 393, 813, 1456
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
BstV1I GCAGC 5 cut(s) 326, 925, 993, 1058, 1569
BstV2I GAAGAC 1 cut(s) 1315
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
BstZ17I GTATAC 1 cut(s) 1020
BsuRI GGCC 3 cut(s) 259, 521, 812
BtgI CCRYGG 1 cut(s) 525
BtgZI GCGATG 1 cut(s) 1563
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 75, 654
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 1 cut(s) 1049
Cac8I GCNNGC 5 cut(s) 510, 514, 690, 810, 897
CfoI GCGC 7 cut(s) 245, 344, 364, 467, 492, 808, 901
Cfr10I RCCGGY 2 cut(s) 508, 808
Cfr13I GGNCC 6 cut(s) 147, 258, 334, 577, 811, 1252
CseI GACGC 2 cut(s) 110, 481
Csp6I GTAC 4 cut(s) 400, 433, 1443, 1496
CspCI CAANNNNNGTGG 2 cut(s) 914, 949
CviAII CATG 6 cut(s) 517, 526, 1081, 1162, 1186, 1244
CviQI GTAC 4 cut(s) 400, 433, 1443, 1496
DdeI CTNAG 5 cut(s) 80, 455, 542, 1172, 1482
DinI GGCGCC 1 cut(s) 466
DpnI GATC 4 cut(s) 51, 960, 1032, 1573
DpnII GATC 4 cut(s) 49, 958, 1030, 1571
DrdI GACNNNNNNGTC 1 cut(s) 332
DriI GACNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 3 cut(s) 284, 1125, 1393
Eam1105I GACNNNNNGTC 1 cut(s) 202
EarI CTCTTC 3 cut(s) 284, 1125, 1393
Ecl136II GAGCTC 2 cut(s) 370, 546
Eco130I CCWWGG 1 cut(s) 525
Eco24I GRGCYC 4 cut(s) 372, 534, 548, 1388
Eco31I GGTCTC 1 cut(s) 410
Eco32I GATATC 2 cut(s) 600, 1530
Eco47I GGWCC 4 cut(s) 147, 334, 577, 1252
Eco53kI GAGCTC 2 cut(s) 370, 546
Eco57I CTGAAG 3 cut(s) 500, 617, 701
Eco88I CYCGRG 3 cut(s) 617, 1073, 1403
EcoICRI GAGCTC 2 cut(s) 370, 546
EcoRII CCWGG 3 cut(s) 329, 813, 1456
EcoRV GATATC 2 cut(s) 600, 1530
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 1374
EcoT38I GRGCYC 4 cut(s) 372, 534, 548, 1388
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 525
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 6 cut(s) 520, 529, 1084, 1165, 1189, 1247
FaqI GGGAC 1 cut(s) 133
FatI CATG 6 cut(s) 516, 525, 1080, 1161, 1185, 1243
FauI CCCGC 3 cut(s) 134, 158, 207
FblI GTMKAC 5 cut(s) 237, 324, 495, 567, 1019
Fnu4HI GCNGC 6 cut(s) 340, 522, 914, 1007, 1047, 1583
FokI GGATG 2 cut(s) 62, 661
FriOI GRGCYC 4 cut(s) 372, 534, 548, 1388
Fsp4HI GCNGC 6 cut(s) 340, 522, 914, 1007, 1047, 1583
FspBI CTAG 3 cut(s) 1256, 1449, 1603
GlaI GCGC 7 cut(s) 244, 343, 363, 466, 491, 807, 900
GluI GCNGC 6 cut(s) 340, 522, 914, 1007, 1047, 1583
GsuI CTGGAG 1 cut(s) 1544
HaeII RGCGCY 2 cut(s) 468, 902
HaeIII GGCC 3 cut(s) 259, 521, 812
HapII CCGG 5 cut(s) 256, 394, 509, 809, 1307
HgaI GACGC 2 cut(s) 110, 481
HhaI GCGC 7 cut(s) 245, 344, 364, 467, 492, 808, 901
Hin1I GRCGYC 2 cut(s) 102, 465
Hin1II CATG 6 cut(s) 520, 529, 1084, 1165, 1189, 1247
Hin6I GCGC 7 cut(s) 243, 342, 362, 465, 490, 806, 899
HinP1I GCGC 7 cut(s) 243, 342, 362, 465, 490, 806, 899
HincII GTYRAC 4 cut(s) 238, 325, 496, 1099
HindII GTYRAC 4 cut(s) 238, 325, 496, 1099
HindIII AAGCTT 3 cut(s) 763, 941, 980
HinfI GANTC 7 cut(s) 326, 613, 710, 1069, 1155, 1320, 1597
HpaII CCGG 5 cut(s) 256, 394, 509, 809, 1307
HphI GGTGA 2 cut(s) 493, 1301
Hpy166II GTNNAC 6 cut(s) 238, 325, 496, 568, 1020, 1099
Hpy8I GTNNAC 6 cut(s) 238, 325, 496, 568, 1020, 1099
Hpy99I CGWCG 9 cut(s) 13, 16, 62, 104, 239, 326, 416, 497, 563
HpyAV CCTTC 3 cut(s) 301, 430, 1501
HpyCH4III ACNGT 3 cut(s) 641, 776, 789
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 925, 1372, 1428, 1546
HpyF10VI GCNNNNNNNGC 4 cut(s) 518, 685, 892, 922
HpyF3I CTNAG 5 cut(s) 80, 455, 542, 1172, 1482
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 2 cut(s) 102, 465
Hsp92II CATG 6 cut(s) 520, 529, 1084, 1165, 1189, 1247
HspAI GCGC 7 cut(s) 243, 342, 362, 465, 490, 806, 899
KasI GGCGCC 1 cut(s) 464
KroI GCCGGC 2 cut(s) 508, 808
KroNI GCCGGC 2 cut(s) 510, 810
Kzo9I GATC 4 cut(s) 49, 958, 1030, 1571
LguI GCTCTTC 1 cut(s) 1393
LmnI GCTCC 6 cut(s) 357, 375, 628, 850, 870, 1003
Lsp1109I GCAGC 5 cut(s) 326, 925, 993, 1058, 1569
LweI GCATC 1 cut(s) 1471
MaeI CTAG 3 cut(s) 1256, 1449, 1603
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 346, 1180
MalI GATC 4 cut(s) 51, 960, 1032, 1573
MboI GATC 4 cut(s) 49, 958, 1030, 1571
MflI RGATCY 1 cut(s) 958
MhlI GDGCHC 5 cut(s) 183, 372, 534, 548, 1388
MluCI AATT 8 cut(s) 167, 623, 748, 919, 928, 1219, 1409, 1470
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 2 cut(s) 320, 1329
Mph1103I ATGCAT 1 cut(s) 1374
MroNI GCCGGC 2 cut(s) 508, 808
MseI TTAA 6 cut(s) 798, 918, 939, 978, 1316, 1562
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 339
MspCI CTTAAG 2 cut(s) 797, 1561
MspI CCGG 5 cut(s) 256, 394, 509, 809, 1307
MspR9I CCNGG 4 cut(s) 331, 395, 815, 1458
Mva1269I GAATGC 1 cut(s) 1562
MvaI CCWGG 3 cut(s) 331, 815, 1458
MvnI CGCG 6 cut(s) 216, 243, 362, 364, 490, 492
MwoI GCNNNNNNNGC 4 cut(s) 518, 685, 892, 922
NaeI GCCGGC 2 cut(s) 510, 810
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 525
NdeII GATC 4 cut(s) 49, 958, 1030, 1571
NgoMIV GCCGGC 2 cut(s) 508, 808
NlaIII CATG 6 cut(s) 520, 529, 1084, 1165, 1189, 1247
NlaIV GGNNCC 6 cut(s) 29, 149, 260, 335, 466, 960
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 2 cut(s) 346, 1180
NsiI ATGCAT 1 cut(s) 1374
NspI RCATGY 1 cut(s) 1165
OliI CACNNNNGTG 1 cut(s) 363
PaeR7I CTCGAG 2 cut(s) 617, 1073
PciSI GCTCTTC 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 4 cut(s) 54, 231, 318, 608
PctI GAATGC 1 cut(s) 1562
PdiI GCCGGC 2 cut(s) 510, 810
PfeI GAWTC 5 cut(s) 613, 710, 1069, 1155, 1597
PflFI GACNNNGTC 2 cut(s) 104, 563
PkrI GCNGC 6 cut(s) 341, 523, 915, 1008, 1048, 1584
PleI GAGTC 2 cut(s) 320, 1328
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 2 cut(s) 320, 1328
Psp124BI GAGCTC 2 cut(s) 372, 548
Psp6I CCWGG 3 cut(s) 329, 813, 1456
PspGI CCWGG 3 cut(s) 329, 813, 1456
PspN4I GGNNCC 6 cut(s) 29, 149, 260, 335, 466, 960
PspPI GGNCC 6 cut(s) 147, 258, 334, 577, 811, 1252
PsrI GAACNNNNNNTAC 2 cut(s) 1003, 1035
PsuI RGATCY 1 cut(s) 958
PsyI GACNNNGTC 2 cut(s) 104, 563
RsaI GTAC 4 cut(s) 401, 434, 1444, 1497
RsaNI GTAC 4 cut(s) 400, 433, 1443, 1496
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 2 cut(s) 372, 548
SalI GTCGAC 3 cut(s) 236, 323, 494
SapI GCTCTTC 1 cut(s) 1393
SaqAI TTAA 6 cut(s) 798, 918, 939, 978, 1316, 1562
SatI GCNGC 6 cut(s) 340, 522, 914, 1007, 1047, 1583
Sau3AI GATC 4 cut(s) 49, 958, 1030, 1571
Sau96I GGNCC 6 cut(s) 147, 258, 334, 577, 811, 1252
ScaI AGTACT 1 cut(s) 1444
SchI GAGTC 2 cut(s) 320, 1329
ScrFI CCNGG 4 cut(s) 331, 395, 815, 1458
SduI GDGCHC 5 cut(s) 183, 372, 534, 548, 1388
SfaNI GCATC 1 cut(s) 1471
SfcI CTRYAG 1 cut(s) 775
SfoI GGCGCC 1 cut(s) 466
Sfr274I CTCGAG 2 cut(s) 617, 1073
SinI GGWCC 4 cut(s) 147, 334, 577, 1252
SlaI CTCGAG 2 cut(s) 617, 1073
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 6 cut(s) 617, 797, 890, 1055, 1073, 1561
SmoI CTYRAG 6 cut(s) 617, 797, 890, 1055, 1073, 1561
Sse9I AATT 8 cut(s) 167, 623, 748, 919, 928, 1219, 1409, 1470
SsiI CCGC 9 cut(s) 127, 151, 157, 200, 214, 241, 307, 337, 522
SspDI GGCGCC 1 cut(s) 464
SspI AATATT 1 cut(s) 1231
SspMI CTAG 3 cut(s) 1256, 1449, 1603
SstI GAGCTC 2 cut(s) 372, 548
StyD4I CCNGG 4 cut(s) 329, 393, 813, 1456
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 3 cut(s) 641, 776, 789
TaiI ACGT 1 cut(s) 324
TaqII GACCGA 1 cut(s) 425
TasI AATT 8 cut(s) 167, 623, 748, 919, 928, 1219, 1409, 1470
TatI WGTACW 2 cut(s) 1442, 1495
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 5 cut(s) 613, 710, 1069, 1155, 1597
Tru1I TTAA 6 cut(s) 798, 918, 939, 978, 1316, 1562
Tru9I TTAA 6 cut(s) 798, 918, 939, 978, 1316, 1562
TscAI CASTG 1 cut(s) 1056
TseFI GTSAC 2 cut(s) 346, 1180
TseI GCWGC 5 cut(s) 339, 913, 1006, 1046, 1582
Tsp45I GTSAC 2 cut(s) 346, 1180
TspDTI ATGAA 5 cut(s) 283, 376, 674, 1202, 1380
TspGWI ACGGA 1 cut(s) 590
TspRI CASTG 1 cut(s) 1056
Tth111I GACNNNGTC 2 cut(s) 104, 563
Vha464I CTTAAG 2 cut(s) 797, 1561
VpaK11BI GGWCC 4 cut(s) 147, 334, 577, 1252
XapI RAATTY 3 cut(s) 167, 748, 1470
XceI RCATGY 1 cut(s) 1165
XhoI CTCGAG 2 cut(s) 617, 1073
XmiI GTMKAC 5 cut(s) 237, 324, 495, 567, 1019
XspI CTAG 3 cut(s) 1256, 1449, 1603
ZrmI AGTACT 1 cut(s) 1444
Zsp2I ATGCAT 1 cut(s) 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.