AT5G65940

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
26376578 .. 26379681
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65940.3

Sequence Viewer

Length: 1137 bp
ATGGCAGTCGAGATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTAAACAGACCAAAGCAGCTGAATGCTCTGTCCTTCCACATGATCTCTCGATTGCTGCAACTGTTCCTTGCATTTGAGGAGGACCCTAGTGTGAAACTTGTCATCCTAAAGGGTCATGGGAGAGCCTTTTGTGCTGGTGGCGATGTTGCAGCTGTTGTTCGTGACATCAATCAAGGTAACTGGAGACTCGGTGCCAATTACTTCTCATCTGAATACATGCTCAACTATGTTATGGCCACATATAGCAAAGCTCAGGTTTCAATCTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGTATCCGTCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGACAGCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGTTTTTTTGGGGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGTGCTGAAATGCTTGCTTGTGGCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCATTAGAAGCAGATCTTTGCAGAATTAATTCAAATGATCCAACTTTTGCCTCAACAATTCTCGATGCATACACCCAGCATCCGCGCCTGAAACAGCAGAGTGCTTACCGCAGGTTAGATGTTATTGATAGGTGTTTCTCAAGGAGAACAGTCGAAGAAATTATATCTGCACTTGAGAGAGAGGCCACTCAAGAAGCAGATGGTTGGATCTCAGCTACCATTCAAGCATTGAAGAAGGGTTCACCAGCAAGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGATTGCAGGGGGTGGGGCAGTGTCTTATCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGAAATCAGCAAAGATTTTGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACCCAAAGTGGGAGCCAAGGCGACTGGAGGACATGAAGGATAGCATGGTGGAGCAGTACTTCGAGAGAGTGGAACGGGAGGATGATCTAAAGCTTCCGCCAAGGAATAACTTGCCTGCTTTAGGGATCGCAAAGCTGTGA

Protein Analysis

378

Amino Acids

42.07

Weight (kDa)

8.4

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 14 - 237 7.8e-32 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 19 - 335 5.9e-123 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 690
AccB1I GGYRCC 2 cut(s) 260, 455
AccI GTMKAC 1 cut(s) 984
AccII CGCG 2 cut(s) 673, 906
AciI CCGC 5 cut(s) 357, 671, 697, 904, 1094
AclWI GGATC 3 cut(s) 620, 803, 1130
AcoI YGGCCR 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 1 cut(s) 1055
AfiI CCNNNNNNNGG 3 cut(s) 452, 1006, 1118
AgsI TTSAA 6 cut(s) 330, 337, 576, 621, 812, 820
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 9 cut(s) 88, 221, 320, 362, 431, 518, 803, 1090, 1132
AluI AGCT 9 cut(s) 88, 221, 320, 362, 431, 518, 803, 1090, 1132
Alw26I GTCTC 3 cut(s) 30, 247, 419
AlwI GGATC 3 cut(s) 620, 803, 1130
AoxI GGCC 5 cut(s) 15, 303, 505, 550, 771
ApeKI GCWGC 3 cut(s) 85, 124, 218
AseI ATTAAT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 2 cut(s) 458, 675
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 822
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 305
BanI GGYRCC 2 cut(s) 260, 455
BanII GRGCYC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 97, 111, 230
BccI CCATC 3 cut(s) 7, 521, 782
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 3 cut(s) 30, 247, 419
BfaI CTAG 2 cut(s) 156, 519
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 690
BfuI GTATCC 1 cut(s) 379
BglII AGATCT 1 cut(s) 601
BisI GCNGC 3 cut(s) 86, 125, 219
BlsI GCNGC 3 cut(s) 87, 126, 220
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 5 cut(s) 153, 262, 457, 479, 1011
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 643, 676
BplI GAGNNNNNCTC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 271, 1043
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 3 cut(s) 712, 762, 782
Bsa29I ATCGAT 1 cut(s) 860
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 376, 481, 1013, 1097
BsaXI ACNNNNNCTCC 4 cut(s) 244, 274, 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 1006, 1118
Bse1I ACTGG 2 cut(s) 254, 1026
BseBI CCWGG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 860
BseDI CCNNGG 4 cut(s) 376, 481, 1013, 1097
BseGI GGATG 3 cut(s) 171, 667, 1084
BseLI CCNNNNNNNGG 3 cut(s) 452, 1006, 1118
BseMII CTCAG 6 cut(s) 35, 41, 335, 390, 414, 813
BseNI ACTGG 2 cut(s) 254, 1026
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 3 cut(s) 97, 111, 230
BseYI CCCAGC 1 cut(s) 663
BsgI GTGCAG 2 cut(s) 741, 988
Bsh1236I CGCG 2 cut(s) 673, 906
BshFI GGCC 5 cut(s) 17, 305, 507, 552, 773
BshNI GGYRCC 2 cut(s) 260, 455
BshVI ATCGAT 1 cut(s) 860
BslI CCNNNNNNNGG 3 cut(s) 452, 1006, 1118
BsmAI GTCTC 3 cut(s) 30, 247, 419
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 5 cut(s) 17, 305, 507, 552, 773
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
Bsp19I CCATGG 1 cut(s) 376
BspACI CCGC 5 cut(s) 357, 671, 697, 904, 1094
BspANI GGCC 5 cut(s) 17, 305, 507, 552, 773
BspCNI CTCAG 6 cut(s) 34, 40, 334, 391, 415, 812
BspDI ATCGAT 1 cut(s) 860
BspFNI CGCG 2 cut(s) 673, 906
BspLI GGNNCC 5 cut(s) 153, 262, 457, 479, 1011
BspMI ACCTGC 1 cut(s) 690
BspPI GGATC 3 cut(s) 620, 803, 1130
BspT107I GGYRCC 2 cut(s) 260, 455
BsrI ACTGG 2 cut(s) 254, 1026
BssECI CCNNGG 4 cut(s) 376, 481, 1013, 1097
BssMI GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 376, 1013, 1097
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 132, 409, 739
Bst6I CTCTTC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 543, 838, 1113
BstDEI CTNAG 7 cut(s) 21, 27, 321, 399, 423, 799, 854
BstDSI CCRYGG 1 cut(s) 376
BstENI CCTNNNNNAGG 1 cut(s) 1116
BstF5I GGATG 3 cut(s) 171, 667, 1084
BstFNI CGCG 2 cut(s) 673, 906
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 2 cut(s) 458, 675
BstKTI GATC 7 cut(s) 114, 604, 628, 798, 860, 1084, 1125
BstMAI GTCTC 3 cut(s) 30, 247, 419
BstMBI GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
BstMWI GCNNNNNNNGC 2 cut(s) 200, 596
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 2 cut(s) 673, 906
BstV1I GCAGC 3 cut(s) 97, 111, 230
BstX2I RGATCY 2 cut(s) 601, 795
BstYI RGATCY 2 cut(s) 601, 795
Bsu15I ATCGAT 1 cut(s) 860
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 5 cut(s) 17, 305, 507, 552, 773
BsuTUI ATCGAT 1 cut(s) 860
BtgI CCRYGG 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 171, 667, 1084
BtsI GCAGTG 1 cut(s) 899
BtsIMutI CAGTG 1 cut(s) 899
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 543, 838, 1113
CfoI GCGC 2 cut(s) 458, 675
Cfr13I GGNCC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 860
Csp6I GTAC 1 cut(s) 1054
CviAII CATG 9 cut(s) 109, 185, 286, 349, 377, 418, 926, 1030, 1042
CviQI GTAC 1 cut(s) 1054
DdeI CTNAG 7 cut(s) 21, 27, 321, 399, 423, 799, 854
DinI GGCGCC 1 cut(s) 457
DpnI GATC 7 cut(s) 113, 603, 627, 797, 859, 1083, 1124
DpnII GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 2 cut(s) 372, 1083
Eco130I CCWWGG 3 cut(s) 376, 1013, 1097
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 1116
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 3 cut(s) 376, 1013, 1097
EcoT22I ATGCAT 1 cut(s) 658
EcoT38I GRGCYC 1 cut(s) 441
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
ErhI CCWWGG 3 cut(s) 376, 1013, 1097
FaeI CATG 9 cut(s) 112, 188, 289, 352, 380, 421, 929, 1033, 1045
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 9 cut(s) 108, 184, 285, 348, 376, 417, 925, 1029, 1041
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 3 cut(s) 86, 125, 219
FokI GGATG 3 cut(s) 158, 654, 1091
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 3 cut(s) 86, 125, 219
FspBI CTAG 2 cut(s) 156, 519
GlaI GCGC 2 cut(s) 457, 674
GluI GCNGC 3 cut(s) 86, 125, 219
GsaI CCCAGC 1 cut(s) 667
GsuI CTGGAG 2 cut(s) 271, 1043
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 5 cut(s) 17, 305, 507, 552, 773
HhaI GCGC 2 cut(s) 458, 675
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 9 cut(s) 112, 188, 289, 352, 380, 421, 929, 1033, 1045
Hin6I GCGC 2 cut(s) 456, 673
HinP1I GCGC 2 cut(s) 456, 673
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 2 cut(s) 60, 255
HphI GGTGA 1 cut(s) 822
Hpy166II GTNNAC 3 cut(s) 585, 830, 985
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 9 cut(s) 10, 64, 117, 230, 334, 446, 650, 779, 1060
Hpy8I GTNNAC 3 cut(s) 585, 830, 985
HpyAV CCTTC 6 cut(s) 112, 582, 817, 863, 928, 1027
HpyCH4III ACNGT 3 cut(s) 132, 409, 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 596
HpyF3I CTNAG 7 cut(s) 21, 27, 321, 399, 423, 799, 854
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 9 cut(s) 112, 188, 289, 352, 380, 421, 929, 1033, 1045
HspAI GCGC 2 cut(s) 456, 673
KasI GGCGCC 1 cut(s) 455
Kzo9I GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
LmnI GCTCC 5 cut(s) 359, 483, 515, 1009, 1048
Lsp1109I GCAGC 3 cut(s) 97, 111, 230
LweI GCATC 2 cut(s) 643, 676
MaeI CTAG 2 cut(s) 156, 519
MaeIII GTNAC 2 cut(s) 230, 245
MalI GATC 7 cut(s) 113, 603, 627, 797, 859, 1083, 1124
MboI GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
MboII GAAGA 3 cut(s) 53, 755, 832
MflI RGATCY 2 cut(s) 601, 795
MhlI GDGCHC 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 5 cut(s) 265, 612, 616, 645, 747
MluNI TGGCCA 1 cut(s) 305
Mly113I GGCGCC 1 cut(s) 456
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 653, 773
Mox20I TGGCCA 1 cut(s) 305
Mph1103I ATGCAT 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 616
MscI TGGCCA 1 cut(s) 305
MseI TTAA 2 cut(s) 615, 843
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 2 cut(s) 88, 221
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 2 cut(s) 673, 906
MwoI GCNNNNNNNGC 2 cut(s) 200, 596
NarI GGCGCC 1 cut(s) 456
NcoI CCATGG 1 cut(s) 376
NdeII GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
NlaIII CATG 9 cut(s) 112, 188, 289, 352, 380, 421, 929, 1033, 1045
NlaIV GGNNCC 5 cut(s) 153, 262, 457, 479, 1011
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 289
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 616
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 87, 126, 220
PleI GAGTC 1 cut(s) 249
PluTI GGCGCC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 663
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 5 cut(s) 153, 262, 457, 479, 1011
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 2 cut(s) 601, 795
PvuII CAGCTG 2 cut(s) 88, 221
RsaI GTAC 1 cut(s) 1055
RsaNI GTAC 1 cut(s) 1054
SaqAI TTAA 2 cut(s) 615, 843
SatI GCNGC 3 cut(s) 86, 125, 219
Sau3AI GATC 7 cut(s) 111, 601, 625, 795, 857, 1081, 1122
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 643, 676
SfoI GGCGCC 1 cut(s) 457
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 3 cut(s) 727, 761, 777
SmoI CTYRAG 3 cut(s) 727, 761, 777
Sse9I AATT 5 cut(s) 265, 612, 616, 645, 747
SsiI CCGC 5 cut(s) 357, 671, 697, 904, 1094
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 2 cut(s) 156, 519
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 3 cut(s) 376, 1013, 1097
TaaI ACNGT 3 cut(s) 132, 409, 739
TaqI TCGA 8 cut(s) 9, 50, 118, 382, 651, 741, 860, 1059
TasI AATT 5 cut(s) 265, 612, 616, 645, 747
TatI WGTACW 1 cut(s) 1053
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 615, 843
Tru9I TTAA 2 cut(s) 615, 843
TscAI CASTG 1 cut(s) 899
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 85, 124, 218
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 947, 1046
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 899
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 1116
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 2 cut(s) 156, 519
ZrmI AGTACT 1 cut(s) 1055
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.