Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

32979278 .. 32988203

Gene Structure 8926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56800

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCTTCTCTCAACTCAACCCGACGCGACGACGACGATTCGGTGGTTTTGGTACGAGAGGATTTCTTTGCGAGGACGTTGACATTGAACAGGCCTCGGCAACTGAATGCCCTTAACTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAGGAGGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTGGTGGTGATGTAGCGGCTGTGGTTCGAAATTGGAGATTAGGTGCAATTTTTTTTCGAAAGGAGTTTACCTTGAACTACTTAATGGCAACATACAGTAAACCACAGGTTTCAATTCTGAATGGAATTGTCATGGGAGGTGGGGCTGGTGCTTCCATCCATGGTAGATTCCGTGTTGCAACTGAGAATTCAGTTTTCGCAATGCCAGAAACAGCTCTGGGACTTTTTCCAGATGTAGGTGCCTCTTATTATTTGTCCAGGCTTCCTGGATTCTTTGGAGAATATGTTGGTCTTACAGGTGCCAGATTGGATGGTGCTGAAATGCTTGCTTGTGGTCTTGCAACTCACTTTGTTCCCTCAACGAGGCTGTCCTCTCTTGAAGCAGATCTATGCAAAGTTGATTCAAGTGAGTTTGCAACAATTCAAGCTATTTTGGATCAATACTCGCAGCATCCAGCTCTAAAAGAGAAAAGTGCTTATTACCGGATGGATGTTATTGACAAGTGCTTTTCTAGAAGAACAGTGGAAGAAATTTTATCTGCCCTCGAGGAGGAGGCTGCAAAGAGGGCAAATGATTGGTTATCGACAACAATTCAATCTCTAAAAAAGGCATCACCAATGAGTTTGAAGATTTCTTTGAGATCAATTAGAGAAGGAAGGCTTCAGGGAGTTGGTCAATGCCTTGTTCGTGAATATAGAATGGTTTCTCATGTTCTGCGAGGAGAAGTCAGCAAGGATTTCAGAGAGGGTTGCAGAGCTATATTGTTGGACAAGGATAGGAACCCAAAGTGGGAGCCTTCTAAATTGGAGCTTATCAATGATCATATGGTTGAGCAGTACTTCTCTAAGTTGGATGATGAAGAATGGGAAGAGTTAAAGCTCCCCGCAAGATTCAACTTGCCTGTAACTGCCATTGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

380

Amino Acids

42.69

Weight (kDa)

6.97

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	25 - 353	8.5e-127	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	27 - 252	2.8e-30	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	761
AccB1I	GGYRCC	2 cut(s)	455, 515
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	233, 1101
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	403, 747
AcuI	CTGAAG	1 cut(s)	863
AfaI	GTAC	2 cut(s)	54, 1055
AfiI	CCNNNNNNNGG	4 cut(s)	452, 579, 766, 1006
AjnI	CCWGG	2 cut(s)	473, 481
AluBI	AGCT	7 cut(s)	431, 644, 674, 974, 1027, 1096, 1138
AluI	AGCT	7 cut(s)	431, 644, 674, 974, 1027, 1096, 1138
AlwI	GGATC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	664, 773
ApoI	RAATTY	2 cut(s)	403, 747
Asp700I	GAANNNNTTC	1 cut(s)	919
AsuHPI	GGTGA	3 cut(s)	196, 236, 822
AsuII	TTCGAA	2 cut(s)	244, 274
AvaI	CYCGRG	1 cut(s)	761
BanI	GGYRCC	2 cut(s)	455, 515
BbvI	GCAGC	2 cut(s)	676, 760
BccI	CCATC	3 cut(s)	380, 521, 697
BciT130I	CCWGG	2 cut(s)	475, 483
BclI	TGATCA	1 cut(s)	1036
BfaI	CTAG	1 cut(s)	729
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	3 cut(s)	234, 665, 774
BlsI	GCNGC	3 cut(s)	235, 666, 775
BmcAI	AGTACT	1 cut(s)	1055
Bme1390I	CCNGG	2 cut(s)	475, 483
BmeT110I	CYCGRG	1 cut(s)	761
BmiI	GGNNCC	4 cut(s)	457, 517, 998, 1011
BmrFI	CCNGG	2 cut(s)	475, 483
BmsI	GCATC	3 cut(s)	157, 676, 836
Bpu14I	TTCGAA	2 cut(s)	244, 274
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	95, 376
BsaWI	WCCGGW	1 cut(s)	699
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 486, 516
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 579, 766, 1006
Bse3DI	GCAATG	2 cut(s)	423, 1128
BseBI	CCWGG	2 cut(s)	475, 483
BseDI	CCNNGG	2 cut(s)	95, 376
BseGI	GGATG	7 cut(s)	172, 372, 532, 667, 708, 712, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	452, 579, 766, 1006
BseMI	GCAATG	2 cut(s)	423, 1128
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	4 cut(s)	176, 779, 782, 951
BseXI	GCAGC	2 cut(s)	676, 760
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	2 cut(s)	455, 515
BsiHKCI	CYCGRG	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	700
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	4 cut(s)	452, 579, 766, 1006
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	761
Bsp119I	TTCGAA	2 cut(s)	244, 274
Bsp143I	GATC	4 cut(s)	601, 652, 857, 1036
Bsp19I	CCATGG	1 cut(s)	376
BspACI	CCGC	2 cut(s)	233, 1101
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	4 cut(s)	457, 517, 998, 1011
BspPI	GGATC	1 cut(s)	660
BspQI	GCTCTTC	1 cut(s)	199
BspT104I	TTCGAA	2 cut(s)	244, 274
BspT107I	GGYRCC	2 cut(s)	455, 515
BsrDI	GCAATG	2 cut(s)	423, 1128
BssECI	CCNNGG	2 cut(s)	95, 376
BssMI	GATC	4 cut(s)	601, 652, 857, 1036
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	475, 483
Bst4CI	ACNGT	3 cut(s)	138, 314, 739
Bst6I	CTCTTC	2 cut(s)	199, 1080
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBI	TTCGAA	2 cut(s)	244, 274
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	2 cut(s)	399, 1062
BstDSI	CCRYGG	1 cut(s)	376
BstENI	CCTNNNNNAGG	2 cut(s)	577, 764
BstF5I	GGATG	7 cut(s)	172, 372, 532, 667, 708, 712, 1075
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	604, 655, 860, 1039
BstMBI	GATC	4 cut(s)	601, 652, 857, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 782
BstNI	CCWGG	2 cut(s)	475, 483
BstSCI	CCNGG	2 cut(s)	473, 481
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	676, 760
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	7 cut(s)	172, 372, 532, 667, 708, 712, 1075
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	1 cut(s)	543
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	53, 1054
CviAII	CATG	3 cut(s)	349, 377, 926
CviQI	GTAC	2 cut(s)	53, 1054
DdeI	CTNAG	2 cut(s)	399, 1062
DpnI	GATC	4 cut(s)	603, 654, 859, 1038
DpnII	GATC	4 cut(s)	601, 652, 857, 1036
Eam1104I	CTCTTC	2 cut(s)	199, 1080
EarI	CTCTTC	2 cut(s)	199, 1080
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	863
Eco88I	CYCGRG	1 cut(s)	761
EcoNI	CCTNNNNNAGG	2 cut(s)	577, 764
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	473, 481
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	352, 380, 929
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	348, 376, 925
FauI	CCCGC	1 cut(s)	1108
FauNDI	CATATG	2 cut(s)	157, 1041
FbaI	TGATCA	1 cut(s)	1036
Fnu4HI	GCNGC	3 cut(s)	234, 665, 774
FokI	GGATG	7 cut(s)	179, 359, 539, 654, 715, 719, 1082
Fsp4HI	GCNGC	3 cut(s)	234, 665, 774
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	3 cut(s)	234, 665, 774
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	700
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	352, 380, 929
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	1136
HinfI	GANTC	6 cut(s)	38, 187, 384, 486, 617, 1107
HpaII	CCGG	1 cut(s)	700
HphI	GGTGA	3 cut(s)	196, 236, 822
Hpy166II	GTNNAC	3 cut(s)	81, 285, 317
Hpy188I	TCNGA	2 cut(s)	336, 959
Hpy188III	TCNNGA	5 cut(s)	132, 446, 593, 729, 905
Hpy8I	GTNNAC	3 cut(s)	81, 285, 317
Hpy99I	CGWCG	4 cut(s)	27, 32, 35, 38
HpyAV	CCTTC	3 cut(s)	863, 867, 1023
HpyCH4III	ACNGT	3 cut(s)	138, 314, 739
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	9 cut(s)	155, 263, 395, 557, 609, 632, 776, 969, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 782
HpyF3I	CTNAG	2 cut(s)	399, 1062
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	352, 380, 929
Ksp22I	TGATCA	1 cut(s)	1036
Kzo9I	GATC	4 cut(s)	601, 652, 857, 1036
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	3 cut(s)	1009, 1024, 1101
Lsp1109I	GCAGC	2 cut(s)	676, 760
LweI	GCATC	3 cut(s)	157, 676, 836
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	1120
MalI	GATC	4 cut(s)	603, 654, 859, 1038
MboI	GATC	4 cut(s)	601, 652, 857, 1036
MboII	GAAGA	6 cut(s)	216, 744, 755, 856, 1088, 1097
MflI	RGATCY	1 cut(s)	601
MmeI	TCCRAC	3 cut(s)	120, 963, 1047
MroXI	GAANNNNTTC	1 cut(s)	919
MseI	TTAA	3 cut(s)	114, 299, 1091
MspI	CCGG	1 cut(s)	700
MspR9I	CCNGG	2 cut(s)	475, 483
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	475, 483
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	215, 782
NcoI	CCATGG	1 cut(s)	376
NdeI	CATATG	2 cut(s)	157, 1041
NdeII	GATC	4 cut(s)	601, 652, 857, 1036
NlaIII	CATG	3 cut(s)	352, 380, 929
NlaIV	GGNNCC	4 cut(s)	457, 517, 998, 1011
NmeAIII	GCCGAG	1 cut(s)	76
NspV	TTCGAA	2 cut(s)	244, 274
PaeR7I	CTCGAG	1 cut(s)	761
PceI	AGGCCT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	919
PfeI	GAWTC	6 cut(s)	38, 187, 384, 486, 617, 1107
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	235, 666, 775
Psp6I	CCWGG	2 cut(s)	473, 481
PspGI	CCWGG	2 cut(s)	473, 481
PspN4I	GGNNCC	4 cut(s)	457, 517, 998, 1011
PspXI	VCTCGAGB	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	2 cut(s)	54, 1055
RsaNI	GTAC	2 cut(s)	53, 1054
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	3 cut(s)	114, 299, 1091
SatI	GCNGC	3 cut(s)	234, 665, 774
Sau3AI	GATC	4 cut(s)	601, 652, 857, 1036
ScaI	AGTACT	1 cut(s)	1055
ScrFI	CCNGG	2 cut(s)	475, 483
SfaNI	GCATC	3 cut(s)	157, 676, 836
Sfr274I	CTCGAG	1 cut(s)	761
SfuI	TTCGAA	2 cut(s)	244, 274
SlaI	CTCGAG	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	191, 761
SmoI	CTYRAG	2 cut(s)	191, 761
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	233, 1101
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	473, 481
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	3 cut(s)	138, 314, 739
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	5 cut(s)	133, 244, 274, 762, 800
TatI	WGTACW	1 cut(s)	1053
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	6 cut(s)	38, 187, 384, 486, 617, 1107
Tru1I	TTAA	3 cut(s)	114, 299, 1091
Tru9I	TTAA	3 cut(s)	114, 299, 1091
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	2 cut(s)	664, 773
TspDTI	ATGAA	1 cut(s)	1089
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	744
XagI	CCTNNNNNAGG	2 cut(s)	577, 764
XapI	RAATTY	2 cut(s)	403, 747
XbaI	TCTAGA	1 cut(s)	728
XhoI	CTCGAG	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	919
XspI	CTAG	1 cut(s)	729
ZrmI	AGTACT	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.