MD07G1169300.v1.1

3-hydroxyisobutyryl-CoA hydrolase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
24396238 .. 24397142
905 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1169300.v1.1.491

Sequence Viewer

Length: 843 bp
ATGCTGAACTCGCGTAGAGGCTCTGCCTGCTCAATCTCGTCCGTGAAGGGTGACCTGCTTATGTTGGGAGCTGGCGTTTGTATTTCAATATACTGTAAATTCCGTGTAGCAACAGAGAATTCAGTCTTTGCAATGCTGGAAGCAGCTCTAGGATTGTTTGCCGGTGCCTCTTTTTTCTTGCCAAGACTTCCTGGATTTTTTTGTGAGTATTTGGGTCTTACAGGTGCAAGATTAGATGGTGCTGAAATGCTTGCATGTGGTCTAGCGACTCACTATGTGCCCTCAGCCAAATTGTCTTTATTGGAAGCAACTCTAACATGCCGAGTAGCTTCATCTACTTCGTCAAGCTGTGATTTTGATTCTACTATTTCAACAATTATAGATGAATACTCGCTGAAGAAATCAACTTTAGTGAAAAAAAGTGCTTATTATAAAAAAAAGGAACTTGCTAAGGCAAACACTAGGGAAGCTGGTGATCATAATGAATGGTTAGCGGCAACAATTCAATCTTTGAAGAAGGCGTTGCCGATGAGTTTGAAGATTACTTTAAGATTGTTTAGAGAAGGACAGGTGCAAGGAATTGGTGAATGCCTCTTCCGCGAGTACCGAATAAGTTGTCGTGTTAAGCAAGGGAAAATCAGCAAGGACTTCAGAGAGGGTTGTAGAGCTACTTTGTCAAACATGGATAAGAAACCAAAATGGAAGCCTTCTAAGTTGGAGCTCATCACTGATCATATGGTTGAGCACTACTTCTCTAAGCTGGATGGTGATGATAAAGAATGGAAAGAATTTAAGTTTCCTACAAGATCCAAATTTCCTGTATTTGCCAATTCCAAACTTTGA

Protein Analysis

281

Amino Acids

31.17

Weight (kDa)

9.32

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 12 - 105 2.2e-07 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 20 - 251 3.7e-57 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc36I ACCTGC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 2 cut(s) 13, 600
AciI CCGC 2 cut(s) 494, 598
AclWI GGATC 1 cut(s) 801
AcsI RAATTY 4 cut(s) 98, 118, 788, 812
AcuI CTGAAG 2 cut(s) 416, 634
AdeI CACNNNGTG 1 cut(s) 277
AfaI GTAC 1 cut(s) 605
AgsI TTSAA 5 cut(s) 87, 372, 506, 514, 538
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 8 cut(s) 71, 146, 329, 348, 470, 668, 721, 760
AluI AGCT 8 cut(s) 71, 146, 329, 348, 470, 668, 721, 760
Alw21I GWGCWC 2 cut(s) 723, 747
AlwI GGATC 1 cut(s) 801
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 4 cut(s) 98, 118, 788, 812
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AsuHPI GGTGA 4 cut(s) 62, 485, 596, 779
BaeGI GKGCMC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 723
Bbv12I GWGCWC 2 cut(s) 723, 747
BbvCI CCTCAGC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 230, 758
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 2 cut(s) 475, 730
BfaI CTAG 3 cut(s) 149, 263, 462
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 2 cut(s) 144, 495
BlsI GCNGC 2 cut(s) 145, 496
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 192
Bpu10I CCTNAGC 2 cut(s) 283, 450
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bse118I RCCGGY 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 769
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 13, 600
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 723, 747
BsiSI CCGG 1 cut(s) 162
BsmI GAATGC 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 282, 723, 747
Bsp143I GATC 3 cut(s) 475, 730, 806
BspACI CCGC 2 cut(s) 494, 598
BspCNI CTCAG 1 cut(s) 296
BspFNI CGCG 2 cut(s) 13, 600
BspLI GGNNCC 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssMI GATC 3 cut(s) 475, 730, 806
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 599
BstC8I GCNNGC 3 cut(s) 28, 73, 252
BstDEI CTNAG 4 cut(s) 283, 450, 711, 756
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 2 cut(s) 13, 600
BstKTI GATC 3 cut(s) 478, 733, 809
BstMBI GATC 3 cut(s) 475, 730, 806
BstMWI GCNNNNNNNGC 3 cut(s) 10, 27, 597
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 2 cut(s) 258, 321
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 2 cut(s) 13, 600
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 806
BstYI RGATCY 1 cut(s) 806
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 1 cut(s) 726
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 28, 73, 252
Cfr10I RCCGGY 1 cut(s) 161
Csp6I GTAC 1 cut(s) 604
CviAII CATG 3 cut(s) 255, 318, 682
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 4 cut(s) 283, 450, 711, 756
DpnI GATC 3 cut(s) 477, 732, 808
DpnII GATC 3 cut(s) 475, 730, 806
DraIII CACNNNGTG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Ecl136II GAGCTC 1 cut(s) 721
Eco24I GRGCYC 1 cut(s) 723
Eco53kI GAGCTC 1 cut(s) 721
Eco57I CTGAAG 2 cut(s) 416, 634
Eco91I GGTNACC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 721
EcoO65I GGTNACC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 723
FaeI CATG 3 cut(s) 258, 321, 685
FatI CATG 3 cut(s) 254, 317, 681
FauNDI CATATG 1 cut(s) 735
FbaI TGATCA 2 cut(s) 475, 730
Fnu4HI GCNGC 2 cut(s) 144, 495
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 2 cut(s) 144, 495
FspBI CTAG 3 cut(s) 149, 263, 462
GluI GCNGC 2 cut(s) 144, 495
HapII CCGG 1 cut(s) 162
Hin1II CATG 3 cut(s) 258, 321, 685
HinfI GANTC 2 cut(s) 268, 359
HpaII CCGG 1 cut(s) 162
HphI GGTGA 4 cut(s) 62, 485, 596, 779
Hpy188I TCNGA 1 cut(s) 653
HpyAV CCTTC 4 cut(s) 40, 511, 557, 717
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 131, 227, 254, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 27, 597
HpyF3I CTNAG 4 cut(s) 283, 450, 711, 756
Hsp92II CATG 3 cut(s) 258, 321, 685
Ksp22I TGATCA 2 cut(s) 475, 730
Kzo9I GATC 3 cut(s) 475, 730, 806
LmnI GCTCC 2 cut(s) 68, 718
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 3 cut(s) 149, 263, 462
MaeIII GTNAC 1 cut(s) 50
MalI GATC 3 cut(s) 477, 732, 808
MboI GATC 3 cut(s) 475, 730, 806
MboII GAAGA 4 cut(s) 409, 526, 550, 586
MflI RGATCY 1 cut(s) 806
MhlI GDGCHC 3 cut(s) 282, 723, 747
MluCI AATT 9 cut(s) 98, 118, 290, 375, 501, 579, 788, 812, 829
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 5 cut(s) 11, 178, 292, 602, 649
MseI TTAA 3 cut(s) 548, 624, 792
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 593
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 2 cut(s) 13, 600
MwoI GCNNNNNNNGC 3 cut(s) 10, 27, 597
NdeI CATATG 1 cut(s) 735
NdeII GATC 3 cut(s) 475, 730, 806
NlaIII CATG 3 cut(s) 258, 321, 685
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 347
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 2 cut(s) 258, 321
PctI GAATGC 1 cut(s) 593
PfeI GAWTC 1 cut(s) 359
PfoI TCCNGGA 1 cut(s) 190
PkrI GCNGC 2 cut(s) 145, 496
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 806
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 3 cut(s) 548, 624, 792
SatI GCNGC 2 cut(s) 144, 495
Sau3AI GATC 3 cut(s) 475, 730, 806
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 3 cut(s) 282, 723, 747
Sse9I AATT 9 cut(s) 98, 118, 290, 375, 501, 579, 788, 812, 829
SsiI CCGC 2 cut(s) 494, 598
SspMI CTAG 3 cut(s) 149, 263, 462
SstI GAGCTC 1 cut(s) 723
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 95
TasI AATT 9 cut(s) 98, 118, 290, 375, 501, 579, 788, 812, 829
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 548, 624, 792
Tru9I TTAA 3 cut(s) 548, 624, 792
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 321, 399, 498
TspGWI ACGGA 2 cut(s) 31, 92
TspRI CASTG 1 cut(s) 733
XapI RAATTY 4 cut(s) 98, 118, 788, 812
XceI RCATGY 2 cut(s) 258, 321
XspI CTAG 3 cut(s) 149, 263, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.