Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024834.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 5351

Gene Structure 5351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024834.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggcttctctcaactcaacccgacgcgacgacgacgattcggtggttttggtacgagaggatttctttgcgaggacgttgacattgaacaggcctcggcaactgaatgcccttaactttgaaatgatttctcgactgttggaacttttccttgcatatgaggaggatgctaatgtcaagttggtgattctcaaggggaaaggaagagcattttgtgctggtggtgatgtagcagctgtggttcgtgacattaatgaaggaaattggagattaggtgcaattttttttcgaaaggagtttaccttaaactacttaatggcaacatacagtaaaccacaggtttcaattctgaatggaattgtcatgggaggtggggctggtgcttccatccatggtagattccgtgttgcaactgagaattcagtttttgcaatgccagaaacagctctgggactttttccagatgtaggtgcctcttattatttgtccaggcttcctggattctttggagaatatgttggtcttacaggtgccagattggatggtgctgaaatgcttgcttgtggtcttgcaactcactttgttccctcaacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

198

Amino Acids

21.64

Weight (kDa)

6.14

Isoelectric Point (pI)

25.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	470, 530
AccII	CGCG	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	88, 122, 345
AjnI	CCWGG	2 cut(s)	488, 496
AluBI	AGCT	2 cut(s)	236, 446
AluI	AGCT	2 cut(s)	236, 446
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	418
AseI	ATTAAT	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	196, 236
AsuII	TTCGAA	1 cut(s)	289
BanI	GGYRCC	2 cut(s)	470, 530
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	395, 536
BciT130I	CCWGG	2 cut(s)	490, 498
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	490, 498
BmiI	GGNNCC	2 cut(s)	472, 532
BmrFI	CCNGG	2 cut(s)	490, 498
BmsI	GCATC	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	95, 391
BsaXI	ACNNNNNCTCC	4 cut(s)	259, 289, 501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	490, 498
BseDI	CCNNGG	2 cut(s)	95, 391
BseGI	GGATG	3 cut(s)	172, 387, 547
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	94
BshNI	GGYRCC	2 cut(s)	470, 530
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	391
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	472, 532
BspQI	GCTCTTC	1 cut(s)	199
BspT104I	TTCGAA	1 cut(s)	289
BspT107I	GGYRCC	2 cut(s)	470, 530
BsrDI	GCAATG	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	95, 391
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	490, 498
Bst4CI	ACNGT	2 cut(s)	138, 329
Bst6I	CTCTTC	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	172, 387, 547
BstFNI	CGCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	490, 498
BstSCI	CCNGG	2 cut(s)	488, 496
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	172, 387, 547
Cac8I	GCNNGC	1 cut(s)	558
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	364, 392
CviJI	RGCY	6 cut(s)	5, 94, 236, 377, 446, 493
CviKI_1	RGCY	6 cut(s)	5, 94, 236, 377, 446, 493
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	488, 496
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	367, 395
FaiI	YATR	6 cut(s)	157, 159, 325, 365, 393, 516
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	2 cut(s)	363, 391
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	179, 374, 554
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	94
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	367, 395
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	4 cut(s)	38, 187, 399, 501
HphI	GGTGA	2 cut(s)	196, 236
Hpy166II	GTNNAC	3 cut(s)	81, 300, 332
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	3 cut(s)	132, 245, 461
Hpy8I	GTNNAC	3 cut(s)	81, 300, 332
Hpy99I	CGWCG	4 cut(s)	27, 32, 35, 38
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	138, 329
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	5 cut(s)	155, 278, 410, 431, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	367, 395
LguI	GCTCTTC	1 cut(s)	199
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	216
MluCI	AATT	5 cut(s)	262, 279, 345, 357, 418
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	52, 66, 105, 154, 157, 362, 484
MseI	TTAA	4 cut(s)	114, 252, 305, 314
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	490, 498
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	490, 498
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	391
NdeI	CATATG	1 cut(s)	157
NlaIII	CATG	2 cut(s)	367, 395
NlaIV	GGNNCC	2 cut(s)	472, 532
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	38, 187, 399, 501
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	488, 496
PspGI	CCWGG	2 cut(s)	488, 496
PspN4I	GGNNCC	2 cut(s)	472, 532
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	4 cut(s)	114, 252, 305, 314
SatI	GCNGC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	490, 498
SetI	ASST	9 cut(s)	80, 238, 277, 305, 342, 373, 448, 472, 532
SfaNI	GCATC	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	5 cut(s)	262, 279, 345, 357, 418
SseBI	AGGCCT	1 cut(s)	94
StuI	AGGCCT	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	488, 496
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	138, 329
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	133, 289
TasI	AATT	5 cut(s)	262, 279, 345, 357, 418
TfiI	GAWTC	4 cut(s)	38, 187, 399, 501
Tru1I	TTAA	4 cut(s)	114, 252, 305, 314
Tru9I	TTAA	4 cut(s)	114, 252, 305, 314
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.