Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006896.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Forward (+)

52362 .. 53561

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006896.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgacttctttcagctcagattatcatgatcatgggaatccagagattctagtacaagagaataatccattcattaggacattgacactccacaagcctcaaaaattgaatgttctctccactctcatgatcttgcagctgtttgagctattcctcaactatgagcatgatgcctttgtcaagttagtcattctcaaaagtagcggaaaagctttttctgccggtggtgatattgcaaatatagcacatcatctctacaatggcaatttgagacatgctctcaaattgtacaaaactgcatacaccctaatgtatttcctagcaataaaaactacacctcaggtttcatttcttaatggaatcactatggggatgggggcaggtgtttctatacacggtagctttcgtgtagcaacagagaagacagtgtttgctatgcccgaaacagctatcggatcgtttcctgatattggttcctcttactacctttcaagacttcttggattctttggagagtatcttggtcttacaggtgccaaattggacggtcctgaaatgcttgctttgggtctagcaactcactttgttccgtcatctaaattggctttgctagaagaagccttggtaagaaaactagactcttcttcaactaatacaagctcagctgacgattgtgctattatttcagctattctagatgaatactctgagcaaccagctccaaaaacgaagagtgcttaccactatatggatgttattgacaagtgcttttctcaatcaacagtggaagaaatattaagtagcctggagaaggagcttgctaccataatcaacataactgatcaccatgaatggttattgtcagcaattcagtcgctaagacaggcatcaccaacaagtttgaagattgctttaagatcgattcgaggaggaaggcggcttcaaggagttggtgagtgcattgttcgcgaatatagaattatttatcatgttttgtgtggggaaatcagcaatgatttcatggagggttgcagagctatactgttggacaaggataagaacccaaagtggaagccttctagattagagcttgtcactgaccagatggtaggccactacttctctagattgcatgatgacgaagaattacagctccctcaaatatctaaattgtctgcaacggccatttccaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

399

Amino Acids

44.35

Weight (kDa)

6.31

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccII	CGCG	1 cut(s)	969
AciI	CCGC	2 cut(s)	204, 937
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	1182
AfaI	GTAC	2 cut(s)	54, 290
AfiI	CCNNNNNNNGG	3 cut(s)	470, 748, 811
AgsI	TTSAA	5 cut(s)	109, 492, 648, 904, 944
AjnI	CCWGG	1 cut(s)	804
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	2 cut(s)	1111, 1182
ApeKI	GCWGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	239, 836, 882, 965
AvaII	GGWCC	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	367, 1099
BceAI	ACGGC	1 cut(s)	1197
BcgI	CGANNNNNNTGC	2 cut(s)	855, 889
BciT130I	CCWGG	1 cut(s)	806
BclI	TGATCA	2 cut(s)	28, 841
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	8 cut(s)	50, 320, 572, 611, 635, 695, 1080, 1125
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	137, 938
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	2 cut(s)	138, 939
Bme1390I	CCNGG	1 cut(s)	806
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	475, 535
BmrFI	CCNGG	1 cut(s)	806
BmsI	GCATC	2 cut(s)	160, 896
BpiI	GAAGAC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpmI	CTGGAG	1 cut(s)	827
Bpu1102I	GCTNAGC	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	920
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 748, 811
Bse118I	RCCGGY	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	1018
BseBI	CCWGG	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	920
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	2 cut(s)	378, 757
BseLI	CCNNNNNNNGG	3 cut(s)	470, 748, 811
BseMI	GCAATG	1 cut(s)	1018
BseMII	CTCAG	4 cut(s)	30, 353, 675, 699
BseRI	GAGGAG	1 cut(s)	942
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	969
BshFI	GGCC	2 cut(s)	1113, 1184
BshNI	GGYRCC	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	920
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	470, 748, 811
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	1113, 1184
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	5 cut(s)	28, 129, 455, 841, 917
Bsp1720I	GCTNAGC	1 cut(s)	661
Bsp68I	TCGCGA	1 cut(s)	969
BspACI	CCGC	2 cut(s)	204, 937
BspANI	GGCC	2 cut(s)	1113, 1184
BspCNI	CTCAG	4 cut(s)	29, 352, 674, 700
BspDI	ATCGAT	1 cut(s)	920
BspFNI	CGCG	1 cut(s)	969
BspHI	TCATGA	2 cut(s)	25, 126
BspLI	GGNNCC	2 cut(s)	475, 535
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	1018
BsrFI	RCCGGY	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	5 cut(s)	28, 129, 455, 841, 917
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	5 cut(s)	398, 427, 548, 784, 1044
Bst6I	CTCTTC	2 cut(s)	646, 725
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	561, 819
BstDEI	CTNAG	5 cut(s)	16, 339, 661, 708, 878
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	378, 757
BstFNI	CGCG	1 cut(s)	969
BstKTI	GATC	5 cut(s)	31, 132, 458, 844, 920
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	5 cut(s)	28, 129, 455, 841, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 218, 242, 966
BstNI	CCWGG	1 cut(s)	806
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	969
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	428
Bsu15I	ATCGAT	1 cut(s)	920
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	1113, 1184
BsuTUI	ATCGAT	1 cut(s)	920
BtsCI	GGATG	2 cut(s)	378, 757
BtsIMutI	CAGTG	3 cut(s)	432, 789, 1095
BtuMI	TCGCGA	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	561, 819
CciI	TCATGA	2 cut(s)	25, 126
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	548
ClaI	ATCGAT	1 cut(s)	920
Csp6I	GTAC	2 cut(s)	53, 289
CviAII	CATG	9 cut(s)	26, 32, 127, 167, 275, 848, 989, 1021, 1133
CviQI	GTAC	2 cut(s)	53, 289
DdeI	CTNAG	5 cut(s)	16, 339, 661, 708, 878
DpnI	GATC	5 cut(s)	30, 131, 457, 843, 919
DpnII	GATC	5 cut(s)	28, 129, 455, 841, 917
EaeI	YGGCCR	1 cut(s)	1182
Eam1104I	CTCTTC	2 cut(s)	646, 725
EarI	CTCTTC	2 cut(s)	646, 725
Eco130I	CCWWGG	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	548
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	804
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	9 cut(s)	29, 35, 130, 170, 278, 851, 992, 1024, 1136
FatI	CATG	9 cut(s)	25, 31, 126, 166, 274, 847, 988, 1020, 1132
FbaI	TGATCA	2 cut(s)	28, 841
Fnu4HI	GCNGC	2 cut(s)	137, 938
FokI	GGATG	2 cut(s)	385, 764
Fsp4HI	GCNGC	2 cut(s)	137, 938
FspBI	CTAG	8 cut(s)	50, 320, 572, 611, 635, 695, 1080, 1125
GluI	GCNGC	2 cut(s)	137, 938
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	2 cut(s)	1113, 1184
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	9 cut(s)	29, 35, 130, 170, 278, 851, 992, 1024, 1136
HindIII	AAGCTT	2 cut(s)	210, 1193
HinfI	GANTC	6 cut(s)	37, 46, 360, 504, 638, 922
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	239, 836, 882, 965
Hpy188I	TCNGA	3 cut(s)	19, 455, 709
HpyAV	CCTTC	3 cut(s)	805, 927, 1086
HpyCH4III	ACNGT	5 cut(s)	398, 427, 548, 784, 1044
HpyCH4V	TGCA	7 cut(s)	136, 236, 299, 960, 1032, 1132, 1178
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 218, 242, 966
HpyF3I	CTNAG	5 cut(s)	16, 339, 661, 708, 878
Hsp92II	CATG	9 cut(s)	29, 35, 130, 170, 278, 851, 992, 1024, 1136
Ksp22I	TGATCA	2 cut(s)	28, 841
Kzo9I	GATC	5 cut(s)	28, 129, 455, 841, 917
LmnI	GCTCC	3 cut(s)	724, 814, 1158
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	160, 896
MaeI	CTAG	8 cut(s)	50, 320, 572, 611, 635, 695, 1080, 1125
MaeIII	GTNAC	1 cut(s)	1093
MalI	GATC	5 cut(s)	30, 131, 457, 843, 919
MboI	GATC	5 cut(s)	28, 129, 455, 841, 917
MboII	GAAGA	8 cut(s)	433, 626, 633, 636, 742, 800, 916, 1154
MluCI	AATT	9 cut(s)	104, 265, 284, 539, 599, 867, 978, 1145, 1169
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	1026
MnlI	CCTC	8 cut(s)	108, 164, 348, 487, 920, 923, 1018, 1167
MseI	TTAA	3 cut(s)	354, 797, 914
MslI	CAYNNNNRTG	3 cut(s)	30, 125, 308
MspA1I	CMGCKG	2 cut(s)	139, 665
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	806
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	1 cut(s)	969
MwoI	GCNNNNNNNGC	4 cut(s)	145, 218, 242, 966
NdeII	GATC	5 cut(s)	28, 129, 455, 841, 917
NlaIII	CATG	9 cut(s)	29, 35, 130, 170, 278, 851, 992, 1024, 1136
NlaIV	GGNNCC	2 cut(s)	475, 535
NmuCI	GTSAC	1 cut(s)	1093
NruI	TCGCGA	1 cut(s)	969
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	2 cut(s)	25, 126
PaqCI	CACCTGC	1 cut(s)	371
PfeI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
PflMI	CCANNNNNTGG	1 cut(s)	748
PkrI	GCNGC	2 cut(s)	138, 939
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
Psp6I	CCWGG	1 cut(s)	804
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	2 cut(s)	475, 535
PspPI	GGNCC	1 cut(s)	548
PvuII	CAGCTG	2 cut(s)	139, 665
RruI	TCGCGA	1 cut(s)	969
RsaI	GTAC	2 cut(s)	54, 290
RsaNI	GTAC	2 cut(s)	53, 289
RseI	CAYNNNNRTG	3 cut(s)	30, 125, 308
SaqAI	TTAA	3 cut(s)	354, 797, 914
SatI	GCNGC	2 cut(s)	137, 938
Sau3AI	GATC	5 cut(s)	28, 129, 455, 841, 917
Sau96I	GGNCC	1 cut(s)	548
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	806
SfaNI	GCATC	2 cut(s)	160, 896
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	3 cut(s)	30, 125, 308
Sse9I	AATT	9 cut(s)	104, 265, 284, 539, 599, 867, 978, 1145, 1169
SsiI	CCGC	2 cut(s)	204, 937
SspI	AATATT	1 cut(s)	795
SspMI	CTAG	8 cut(s)	50, 320, 572, 611, 635, 695, 1080, 1125
StyD4I	CCNGG	1 cut(s)	804
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	5 cut(s)	398, 427, 548, 784, 1044
TaqI	TCGA	2 cut(s)	920, 925
TasI	AATT	9 cut(s)	104, 265, 284, 539, 599, 867, 978, 1145, 1169
TatI	WGTACW	2 cut(s)	52, 288
TauI	GCSGC	1 cut(s)	940
TfiI	GAWTC	5 cut(s)	37, 46, 360, 504, 922
Tru1I	TTAA	3 cut(s)	354, 797, 914
Tru9I	TTAA	3 cut(s)	354, 797, 914
TscAI	CASTG	3 cut(s)	432, 789, 1102
TseFI	GTSAC	1 cut(s)	1093
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	1093
TspDTI	ATGAA	5 cut(s)	61, 336, 714, 864, 1009
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	3 cut(s)	432, 789, 1102
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	809
XbaI	TCTAGA	3 cut(s)	694, 1079, 1124
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	8 cut(s)	50, 320, 572, 611, 635, 695, 1080, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.