Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005967.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

56771 .. 57970

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005967.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggcttctttcagctcagatcatcatgatcatgggaatccagagattctagtacaagagaataatccattcattaggacattgacactccacaagcctcaaaaattgaatgttatctccaattccatgatcttccggttgatcgagctattcctcaactacgagcacgatgcctttgtcaagttagtcattctcaaaggtagcggaaaagctttttgtgccggtggtgatgttgtgtatgtagcacagcatctctacaatggcaatttgagacctgctctcaaatttttcaaaattggatacactctaatgtatttgctagcaacaaaaactacactgcaagtttcatttcttaatggaatcactatggggagtggggcaggtgtttctatacccggtaggtttcgtgtagcaacggagaagacagtgtttgctatgccagaaacagcaattggagggtttcctgatgttggttcctcttactacctttcaagacttcctggattctttggagagtatcttggtcttacaggtgccagattggacggtcctgagatgcttgctttgggtctagcaactcactatgttccctcatctaacttgggtttgctagaagaagccttaataagaaaactaggctcttcttcaactaatacaagctcaactgatgattatgctattatttcagctattctagatgaatactctgagcaaccagctccaaaaacgaagagtgcttaccactatatggatgttattgacaagtgtttttctcaatcaacagtggaagacatattaagtagcctagagaatgagcttgctaccataatcaacataactgatcaccatgaatggttatcgtcagcaattcagtcactaagacaggcctcaccaacaagtttgaagattactttaagatctattcgaggaggaaggtggcttcaaggagttggtgagtgcattgttctcgaatatagaattatttctcatgttttgagtggggaaattaacaaggacttcatggagggttgcagagctatgttgttggacaaagataagaacccaaagtggaatccttctagattggagctcgtcacagaccaaatggttgagcactacttctctaggttggatgatgatgaagaattaaacctccctcaaacattcaatttgcctgtcactgccatttccaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

399

Amino Acids

44.3

Weight (kDa)

5.75

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	2 cut(s)	283, 371
AccB1I	GGYRCC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	748
AciI	CCGC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	470, 748
AgsI	TTSAA	7 cut(s)	109, 292, 492, 648, 904, 944, 1168
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	9 cut(s)	15, 148, 212, 660, 689, 719, 817, 1037, 1090
AluI	AGCT	9 cut(s)	15, 148, 212, 660, 689, 719, 817, 1037, 1090
Alw21I	GWGCWC	3 cut(s)	168, 1092, 1116
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	885
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	982
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	239, 836, 882, 965
AsuNHI	GCTAGC	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	1092
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	2 cut(s)	428, 795
Bbv12I	GWGCWC	3 cut(s)	168, 1092, 1116
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 949, 983
BciT130I	CCWGG	1 cut(s)	501
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	28, 841
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
BfuAI	ACCTGC	2 cut(s)	283, 371
BfuI	GTATCC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	917
Bme1390I	CCNGG	2 cut(s)	396, 501
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	2 cut(s)	475, 535
BmrFI	CCNGG	2 cut(s)	396, 501
BmsI	GCATC	3 cut(s)	160, 259, 546
BmtI	GCTAGC	1 cut(s)	323
BpiI	GAAGAC	2 cut(s)	428, 795
BplI	GAGNNNNNCTC	2 cut(s)	262, 294
BpuMI	CCSGG	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 748
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	501
BseGI	GGATG	2 cut(s)	757, 1138
BseLI	CCNNNNNNNGG	2 cut(s)	470, 748
BseMII	CTCAG	3 cut(s)	30, 543, 699
BseRI	GAGGAG	1 cut(s)	942
BshFI	GGCC	1 cut(s)	887
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	3 cut(s)	168, 1092, 1116
BsiSI	CCGG	3 cut(s)	136, 222, 396
BslI	CCNNNNNNNGG	2 cut(s)	470, 748
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	887
Bso31I	GGTCTC	1 cut(s)	265
Bsp1286I	GDGCHC	3 cut(s)	168, 1092, 1116
Bsp143I	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	887
BspCNI	CTCAG	3 cut(s)	29, 544, 700
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	475, 535
BspMI	ACCTGC	2 cut(s)	283, 371
BspOI	GCTAGC	1 cut(s)	323
BspQI	GCTCTTC	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	427, 548, 784
Bst6I	CTCTTC	2 cut(s)	646, 725
BstC8I	GCNNGC	3 cut(s)	321, 561, 819
BstDEI	CTNAG	4 cut(s)	16, 552, 708, 878
BstF5I	GGATG	2 cut(s)	757, 1138
BstKTI	GATC	6 cut(s)	22, 31, 132, 144, 844, 920
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	394, 499
BstV2I	GAAGAC	2 cut(s)	428, 795
BstX2I	RGATCY	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	917
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	887
BtsCI	GGATG	2 cut(s)	757, 1138
BtsI	GCAGTG	2 cut(s)	335, 1179
BtsIMutI	CAGTG	4 cut(s)	335, 432, 789, 1179
BveI	ACCTGC	2 cut(s)	283, 371
Cac8I	GCNNGC	3 cut(s)	321, 561, 819
CciI	TCATGA	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	6 cut(s)	26, 32, 127, 848, 989, 1021
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	4 cut(s)	16, 552, 708, 878
DpnI	GATC	6 cut(s)	21, 30, 131, 143, 843, 919
DpnII	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
Eam1104I	CTCTTC	2 cut(s)	646, 725
EarI	CTCTTC	2 cut(s)	646, 725
Ecl136II	GAGCTC	1 cut(s)	1090
Eco147I	AGGCCT	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	1092
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	1090
EcoICRI	GAGCTC	1 cut(s)	1090
EcoRII	CCWGG	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	1092
FaeI	CATG	6 cut(s)	29, 35, 130, 851, 992, 1024
FatI	CATG	6 cut(s)	25, 31, 126, 847, 988, 1020
FbaI	TGATCA	2 cut(s)	28, 841
FokI	GGATG	2 cut(s)	764, 1145
FriOI	GRGCYC	1 cut(s)	1092
FspBI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
HaeIII	GGCC	1 cut(s)	887
HapII	CCGG	3 cut(s)	136, 222, 396
Hin1II	CATG	6 cut(s)	29, 35, 130, 851, 992, 1024
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	5 cut(s)	37, 46, 360, 504, 1072
HpaII	CCGG	3 cut(s)	136, 222, 396
HphI	GGTGA	4 cut(s)	239, 836, 882, 965
Hpy188I	TCNGA	2 cut(s)	19, 709
Hpy188III	TCNNGA	8 cut(s)	26, 41, 464, 492, 551, 695, 968, 1080
HpyAV	CCTTC	2 cut(s)	927, 1086
HpyCH4III	ACNGT	3 cut(s)	427, 548, 784
HpyCH4V	TGCA	3 cut(s)	340, 960, 1032
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	4 cut(s)	16, 552, 708, 878
Hsp92II	CATG	6 cut(s)	29, 35, 130, 851, 992, 1024
Ksp22I	TGATCA	2 cut(s)	28, 841
Kzo9I	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
LguI	GCTCTTC	1 cut(s)	646
LmnI	GCTCC	2 cut(s)	724, 1087
LweI	GCATC	3 cut(s)	160, 259, 546
MaeI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
MaeIII	GTNAC	3 cut(s)	873, 1093, 1177
MalI	GATC	6 cut(s)	21, 30, 131, 143, 843, 919
MboI	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
MboII	GAAGA	9 cut(s)	124, 433, 626, 633, 636, 742, 800, 916, 1154
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	3 cut(s)	168, 1092, 1116
MmeI	TCCRAC	2 cut(s)	1026, 1110
MroXI	GAANNNNTTC	1 cut(s)	982
MseI	TTAA	6 cut(s)	354, 623, 797, 914, 1008, 1148
MslI	CAYNNNNRTG	2 cut(s)	30, 308
MspI	CCGG	3 cut(s)	136, 222, 396
MspR9I	CCNGG	2 cut(s)	396, 501
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	6 cut(s)	29, 35, 130, 851, 992, 1024
NlaIV	GGNNCC	2 cut(s)	475, 535
NmuCI	GTSAC	3 cut(s)	873, 1093, 1177
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	887
PciSI	GCTCTTC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	982
PfeI	GAWTC	5 cut(s)	37, 46, 360, 504, 1072
PflMI	CCANNNNNTGG	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	1092
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	475, 535
PspPI	GGNCC	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	917
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	2 cut(s)	30, 308
SacI	GAGCTC	1 cut(s)	1092
SapI	GCTCTTC	1 cut(s)	646
SaqAI	TTAA	6 cut(s)	354, 623, 797, 914, 1008, 1148
Sau3AI	GATC	6 cut(s)	19, 28, 129, 141, 841, 917
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	396, 501
SduI	GDGCHC	3 cut(s)	168, 1092, 1116
SfaNI	GCATC	3 cut(s)	160, 259, 546
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	2 cut(s)	30, 308
SseBI	AGGCCT	1 cut(s)	887
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125
SstI	GAGCTC	1 cut(s)	1092
StuI	AGGCCT	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	394, 499
TaaI	ACNGT	3 cut(s)	427, 548, 784
TaqI	TCGA	3 cut(s)	144, 925, 969
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	5 cut(s)	37, 46, 360, 504, 1072
Tru1I	TTAA	6 cut(s)	354, 623, 797, 914, 1008, 1148
Tru9I	TTAA	6 cut(s)	354, 623, 797, 914, 1008, 1148
TscAI	CASTG	4 cut(s)	342, 432, 789, 1186
TseFI	GTSAC	3 cut(s)	873, 1093, 1177
Tsp45I	GTSAC	3 cut(s)	873, 1093, 1177
TspDTI	ATGAA	6 cut(s)	61, 336, 714, 864, 1009, 1155
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	4 cut(s)	342, 432, 789, 1186
Van91I	CCANNNNNTGG	1 cut(s)	748
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	2 cut(s)	694, 1079
XmnI	GAANNNNTTC	1 cut(s)	982
XspI	CTAG	9 cut(s)	50, 320, 572, 611, 635, 695, 806, 1080, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.