Rorug01G0254200

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
36357276 .. 36358597
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0254200.1

Sequence Viewer

Length: 1029 bp
ATGGCAGATCAACAATCCTCAATCGACCCCTACAAGTTCCTCAAAATCGTTCCCAACCCAGATGGCTCACTCACCCGCCACGCCCCACTCCCATTCGCACCCACAACCGAGTCAATCCCCGCCGATTCTCACCCCAACTCACCCCAACTCGTCCTCTCTAAGGACATCCCTCTCGACCCAAAATCCCAAACCTTCCTCCGCCTCTTCAAACCCCACAATCTCCCCCCAAACCCAAACCCTAACCTCCCTCTCCTCATCTACTTCCACGGCGGCGGCTTCGTTCTCTTCAGCGCCGCCTCTCAGCCTTTCCACAACTCCTGCTCTCGCCTCGCCCTCTCTATCCCAGCCCTAGTCCTCTCCGTCGAGTACCGTCTCGCCCCCGAGCACCGCCTCCCCGCCGCCTACGACGACGCCGTTTCGGCCATCACCTGGCTCAAAAACCAGGCCTCCTCTATCGACGGAGATTCGTGGCTGAAAAACTCCGTAGATTTCTCCAAGTGTATCCTGATGGGAGGTAGCGCCGGGGCTAATATCGCCTACCACGCGGCTCTACGCGCTTCCGATGTGGACCTCTCCCCGATCAAGATCCGAGGGCTGATATTGCACCAAGCGTATTTCGGTGGGGTCAACAGGACCGAATCCGAGATCAGGTTCATCAACGACCGGGTGCTGCCGTTAGTCGCTAACGACTTGATGTGGGCCCTGAGTCTGCCGGAGGGGGTTGATCGTGACCACGAGTATTGTAATCCGTTTATGAACGGGGGTGATGGAAGGATCGGACGGTTGCCGTGGTGTTTGGTGAGCGGGAATGGCGGGGACCCACTGGTGGATAGGCAGAAGGAGATGGCGGCATTGTTGGAGTCACGCGGGGTGCACGTGATGGCCCGGTTTAATGAGGGTGGTTTTCATGCTGTGGAGCTATTTGACCCGAGTGAGGCCGAGGCTTTGTATGAGATTGTTAAGGAATTTATCGGCTCTTGTTGCGCTCACGGTAGCGATGATGTTGCCGTGGCAAAATCAGCCATGTGA

Protein Analysis

342

Amino Acids

37.25

Weight (kDa)

5.61

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 74 - 187 2e-13 BD-FAE
Abhydrolase_3 PF07859 85 - 305 6.5e-54 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 804
AccII CGCG 3 cut(s) 545, 555, 867
AclWI GGATC 2 cut(s) 580, 782
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 1 cut(s) 965
AcuI CTGAAG 1 cut(s) 271
AcvI CACGTG 1 cut(s) 877
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 5 cut(s) 160, 429, 648, 826, 934
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 2 cut(s) 428, 441
AluBI AGCT 1 cut(s) 919
AluI AGCT 1 cut(s) 919
Alw21I GWGCWC 2 cut(s) 387, 876
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 872
AlwI GGATC 2 cut(s) 580, 782
Ama87I CYCGRG 2 cut(s) 380, 928
AoxI GGCC 5 cut(s) 420, 444, 699, 882, 936
ApaI GGGCCC 1 cut(s) 703
ApaLI GTGCAC 1 cut(s) 872
ApeKI GCWGC 1 cut(s) 670
ApoI RAATTY 1 cut(s) 965
AspLEI GCGC 4 cut(s) 293, 521, 557, 986
AspS9I GGNCC 6 cut(s) 568, 633, 699, 700, 817, 883
AsuC2I CCSGG 3 cut(s) 523, 665, 886
AsuHPI GGTGA 6 cut(s) 64, 122, 132, 418, 776, 811
AvaI CYCGRG 2 cut(s) 380, 928
AvaII GGWCC 3 cut(s) 568, 633, 817
BaeGI GKGCMC 2 cut(s) 703, 876
BanII GRGCYC 1 cut(s) 703
BauI CACGAG 1 cut(s) 734
BbrPI CACGTG 1 cut(s) 877
Bbv12I GWGCWC 2 cut(s) 387, 876
BbvI GCAGC 1 cut(s) 657
BccI CCATC 6 cut(s) 56, 431, 502, 761, 838, 874
BceAI ACGGC 5 cut(s) 283, 398, 658, 772, 992
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 2 cut(s) 430, 443
BciVI GTATCC 1 cut(s) 512
BcnI CCSGG 3 cut(s) 523, 665, 886
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 1 cut(s) 350
BfoI RGCGCY 2 cut(s) 294, 522
BfuI GTATCC 1 cut(s) 512
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 7 cut(s) 271, 274, 294, 399, 546, 671, 849
BlsI GCNGC 7 cut(s) 272, 275, 295, 400, 547, 672, 850
Bme1390I CCNGG 5 cut(s) 430, 443, 523, 665, 886
Bme18I GGWCC 3 cut(s) 568, 633, 817
BmeT110I CYCGRG 2 cut(s) 380, 928
BmgT120I GGNCC 6 cut(s) 568, 633, 699, 700, 817, 883
BmiI GGNNCC 3 cut(s) 701, 818, 819
BmrFI CCNGG 5 cut(s) 430, 443, 523, 665, 886
BpuMI CCSGG 3 cut(s) 523, 665, 886
BsaAI YACGTR 1 cut(s) 877
BsaBI GATNNNNATC 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 6 cut(s) 265, 522, 589, 788, 939, 1008
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 429, 648, 826, 934
Bse1I ACTGG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 584
BseBI CCWGG 2 cut(s) 430, 443
BseDI CCNNGG 6 cut(s) 265, 522, 589, 788, 939, 1008
BseGI GGATG 1 cut(s) 165
BseJI GATNNNNATC 1 cut(s) 584
BseLI CCNNNNNNNGG 5 cut(s) 160, 429, 648, 826, 934
BseMII CTCAG 2 cut(s) 314, 695
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 2 cut(s) 242, 439
BseSI GKGCMC 2 cut(s) 703, 876
BseXI GCAGC 1 cut(s) 657
BseYI CCCAGC 1 cut(s) 343
Bsh1236I CGCG 3 cut(s) 545, 555, 867
Bsh1285I CGRYCG 1 cut(s) 664
BshFI GGCC 5 cut(s) 422, 446, 701, 884, 938
BsiEI CGRYCG 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 387, 876
BsiHKCI CYCGRG 2 cut(s) 380, 928
BsiSI CCGG 4 cut(s) 522, 664, 713, 886
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 5 cut(s) 160, 429, 648, 826, 934
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 830
BsnI GGCC 5 cut(s) 422, 446, 701, 884, 938
BsoBI CYCGRG 2 cut(s) 380, 928
Bsp120I GGGCCC 1 cut(s) 699
Bsp1286I GDGCHC 3 cut(s) 387, 703, 876
Bsp143I GATC 6 cut(s) 7, 579, 585, 645, 724, 774
BspANI GGCC 5 cut(s) 422, 446, 701, 884, 938
BspCNI CTCAG 2 cut(s) 313, 696
BspFNI CGCG 3 cut(s) 545, 555, 867
BspLI GGNNCC 3 cut(s) 701, 818, 819
BspPI GGATC 2 cut(s) 580, 782
BsrBI CCGCTC 1 cut(s) 804
BsrI ACTGG 1 cut(s) 828
BssECI CCNNGG 6 cut(s) 265, 522, 589, 788, 939, 1008
BssMI GATC 6 cut(s) 7, 579, 585, 645, 724, 774
BssNI GRCGYC 1 cut(s) 411
BssSI CACGAG 1 cut(s) 734
Bst2BI CACGAG 1 cut(s) 734
Bst2UI CCWGG 2 cut(s) 430, 443
Bst4CI ACNGT 3 cut(s) 371, 783, 992
Bst6I CTCTTC 2 cut(s) 209, 290
BstACI GRCGYC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 877
BstDEI CTNAG 3 cut(s) 159, 300, 704
BstDSI CCRYGG 3 cut(s) 265, 788, 1008
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 3 cut(s) 545, 555, 867
BstH2I RGCGCY 2 cut(s) 294, 522
BstHHI GCGC 4 cut(s) 293, 521, 557, 986
BstKTI GATC 6 cut(s) 10, 582, 588, 648, 727, 777
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 6 cut(s) 7, 579, 585, 645, 724, 774
BstMCI CGRYCG 1 cut(s) 664
BstMWI GCNNNNNNNGC 8 cut(s) 419, 533, 542, 554, 601, 810, 981, 1019
BstNI CCWGG 2 cut(s) 430, 443
BstSCI CCNGG 5 cut(s) 428, 441, 521, 663, 884
BstSLI GKGCMC 2 cut(s) 703, 876
BstUI CGCG 3 cut(s) 545, 555, 867
BstV1I GCAGC 1 cut(s) 657
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BsuI GTATCC 1 cut(s) 512
BsuRI GGCC 5 cut(s) 422, 446, 701, 884, 938
BtgI CCRYGG 3 cut(s) 265, 788, 1008
BtgZI GCGATG 1 cut(s) 1011
BtsCI GGATG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 821
CfoI GCGC 4 cut(s) 293, 521, 557, 986
Cfr13I GGNCC 6 cut(s) 568, 633, 699, 700, 817, 883
CseI GACGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 367
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CviAII CATG 2 cut(s) 908, 1024
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 3 cut(s) 159, 300, 704
DpnI GATC 6 cut(s) 9, 581, 587, 647, 726, 776
DpnII GATC 6 cut(s) 7, 579, 585, 645, 724, 774
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 209, 290
EarI CTCTTC 2 cut(s) 209, 290
EciI GGCGGA 1 cut(s) 188
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 3 cut(s) 568, 633, 817
Eco57I CTGAAG 1 cut(s) 271
Eco72I CACGTG 1 cut(s) 877
Eco88I CYCGRG 2 cut(s) 380, 928
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO109I RGGNCCY 2 cut(s) 700, 817
EcoRII CCWGG 2 cut(s) 428, 441
EcoT38I GRGCYC 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 2 cut(s) 911, 1027
FaiI YATR 4 cut(s) 755, 909, 951, 1025
FaqI GGGAC 1 cut(s) 830
FatI CATG 2 cut(s) 907, 1023
FauI CCCGC 6 cut(s) 83, 127, 403, 797, 806, 860
Fnu4HI GCNGC 7 cut(s) 271, 274, 294, 399, 546, 671, 849
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 7 cut(s) 271, 274, 294, 399, 546, 671, 849
FspBI CTAG 1 cut(s) 350
GlaI GCGC 4 cut(s) 292, 520, 556, 985
GluI GCNGC 7 cut(s) 271, 274, 294, 399, 546, 671, 849
GsaI CCCAGC 1 cut(s) 347
HaeII RGCGCY 2 cut(s) 294, 522
HaeIII GGCC 5 cut(s) 422, 446, 701, 884, 938
HapII CCGG 4 cut(s) 522, 664, 713, 886
HgaI GACGC 1 cut(s) 419
HhaI GCGC 4 cut(s) 293, 521, 557, 986
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 2 cut(s) 911, 1027
Hin6I GCGC 4 cut(s) 291, 519, 555, 984
HinP1I GCGC 4 cut(s) 291, 519, 555, 984
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 6 cut(s) 110, 125, 464, 638, 706, 860
HpaII CCGG 4 cut(s) 522, 664, 713, 886
HphI GGTGA 6 cut(s) 64, 122, 132, 418, 776, 811
Hpy166II GTNNAC 3 cut(s) 568, 628, 874
Hpy188I TCNGA 4 cut(s) 562, 590, 643, 779
Hpy188III TCNNGA 4 cut(s) 173, 505, 583, 728
Hpy8I GTNNAC 3 cut(s) 568, 628, 874
Hpy99I CGWCG 4 cut(s) 365, 410, 413, 461
HpyAV CCTTC 3 cut(s) 202, 765, 832
HpyCH4III ACNGT 3 cut(s) 371, 783, 992
HpyCH4IV ACGT 1 cut(s) 876
HpyCH4V TGCA 2 cut(s) 604, 874
HpyF10VI GCNNNNNNNGC 8 cut(s) 419, 533, 542, 554, 601, 810, 981, 1019
HpyF3I CTNAG 3 cut(s) 159, 300, 704
HpySE526I ACGT 1 cut(s) 876
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 2 cut(s) 911, 1027
HspAI GCGC 4 cut(s) 291, 519, 555, 984
KflI GGGWCCC 1 cut(s) 817
Kzo9I GATC 6 cut(s) 7, 579, 585, 645, 724, 774
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 1 cut(s) 657
MaeI CTAG 1 cut(s) 350
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 2 cut(s) 728, 861
MalI GATC 6 cut(s) 9, 581, 587, 647, 726, 776
MbiI CCGCTC 1 cut(s) 804
MboI GATC 6 cut(s) 7, 579, 585, 645, 724, 774
MboII GAAGA 2 cut(s) 196, 277
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 3 cut(s) 387, 703, 876
MluCI AATT 1 cut(s) 965
MlyI GAGTC 3 cut(s) 119, 715, 869
MmeI TCCRAC 1 cut(s) 837
MseI TTAA 2 cut(s) 891, 960
MspI CCGG 4 cut(s) 522, 664, 713, 886
MspR9I CCNGG 5 cut(s) 430, 443, 523, 665, 886
MvaI CCWGG 2 cut(s) 430, 443
MvnI CGCG 3 cut(s) 545, 555, 867
MwoI GCNNNNNNNGC 8 cut(s) 419, 533, 542, 554, 601, 810, 981, 1019
NciI CCSGG 3 cut(s) 523, 665, 886
NdeII GATC 6 cut(s) 7, 579, 585, 645, 724, 774
NlaIII CATG 2 cut(s) 911, 1027
NlaIV GGNNCC 3 cut(s) 701, 818, 819
NmeAIII GCCGAG 1 cut(s) 964
NmuCI GTSAC 2 cut(s) 728, 861
PceI AGGCCT 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfeI GAWTC 3 cut(s) 125, 464, 638
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 7 cut(s) 272, 275, 295, 400, 547, 672, 850
PleI GAGTC 3 cut(s) 118, 714, 868
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 3 cut(s) 118, 714, 868
Ppu21I YACGTR 1 cut(s) 877
PpuMI RGGWCCY 1 cut(s) 817
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 2 cut(s) 428, 441
PspCI CACGTG 1 cut(s) 877
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 2 cut(s) 428, 441
PspN4I GGNNCC 3 cut(s) 701, 818, 819
PspOMI GGGCCC 1 cut(s) 699
PspPI GGNCC 6 cut(s) 568, 633, 699, 700, 817, 883
PspPPI RGGWCCY 1 cut(s) 817
PsuI RGATCY 1 cut(s) 585
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 891, 960
SatI GCNGC 7 cut(s) 271, 274, 294, 399, 546, 671, 849
Sau3AI GATC 6 cut(s) 7, 579, 585, 645, 724, 774
Sau96I GGNCC 6 cut(s) 568, 633, 699, 700, 817, 883
SchI GAGTC 3 cut(s) 119, 715, 869
ScrFI CCNGG 5 cut(s) 430, 443, 523, 665, 886
SduI GDGCHC 3 cut(s) 387, 703, 876
SetI ASST 8 cut(s) 194, 246, 431, 517, 573, 653, 879, 921
SinI GGWCC 3 cut(s) 568, 633, 817
Sse9I AATT 1 cut(s) 965
SseBI AGGCCT 1 cut(s) 446
SspMI CTAG 1 cut(s) 350
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 5 cut(s) 428, 441, 521, 663, 884
TaaI ACNGT 3 cut(s) 371, 783, 992
TaiI ACGT 1 cut(s) 879
TaqI TCGA 4 cut(s) 24, 174, 363, 456
TaqII GACCGA 1 cut(s) 650
TasI AATT 1 cut(s) 965
TauI GCSGC 6 cut(s) 273, 276, 296, 401, 548, 851
TfiI GAWTC 3 cut(s) 125, 464, 638
Tru1I TTAA 2 cut(s) 891, 960
Tru9I TTAA 2 cut(s) 891, 960
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 2 cut(s) 728, 861
TseI GCWGC 1 cut(s) 670
Tsp45I GTSAC 2 cut(s) 728, 861
TspDTI ATGAA 3 cut(s) 643, 770, 896
TspGWI ACGGA 4 cut(s) 349, 472, 474, 738
TspRI CASTG 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 429
VneI GTGCAC 1 cut(s) 872
VpaK11BI GGWCC 3 cut(s) 568, 633, 817
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 1 cut(s) 965
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.