Rroxscaffold_4G00294310

Belongs to the enoyl-CoA hydratase isomerase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
14422146 .. 14430030
7885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294310.1

Sequence Viewer

Length: 567 bp
ATGCTTAATGGAATTGTCATGGGAGGTGGCGCTGGAATTTCTATACACGGCAGGTTTAGTGTAGCAACCGAGAACTCGGTGTTTGCTATGCCGGAAAATCTCTTGTCTATAAAAGAGAAAAGTGCTTGCCACAAAATGGATGTTATTGACGAGTGCTTTTCTAAGAGAACAGTGGAGGAAATTTTAAGTGCTCTTGAGAAGGAGCTTGCTACCATTGGTTTAAATGGTCGTGAATGGTTGTCTTCATCGATTGAATCCCCGAAGAAGGCATCGCCGATAAGTTTGAAGATTACATTGAGATCGATTCGAGAAGGAAGGATGAAAGGAGTTGGCGAGTGCCTTGTTCGTGAGGGAAATCAGCAAGGATTTCGTGAGGGTTGTAGAGCTATATTGTTGGATAAGGATAAGAACCCGAAATGGGAGCCTTCTAAGTTGGAGCTCATCACCGATGAGATGGTTGATCACTACTTCTCGAAGTTAGATGATGATGAAGAATGGGAAGAGTTAAAGTCGCTCGAAAGATCTAAAACTCGCCATTGCCAAGATTTAACCGATGATCGCTTGTGA

Protein Analysis

188

Amino Acids

21.2

Weight (kDa)

5.38

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 2 - 33 1.1e-12 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 41 - 157 4.2e-25 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 136
AcsI RAATTY 2 cut(s) 36, 180
AfiI CCNNNNNNNGG 3 cut(s) 136, 265, 418
AgsI TTSAA 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 205, 386, 439
AluI AGCT 3 cut(s) 205, 386, 439
Alw21I GWGCWC 2 cut(s) 193, 441
ApoI RAATTY 2 cut(s) 36, 180
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 436
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 193, 441
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BclI TGATCA 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 42
BglII AGATCT 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 423
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 215
Bsa29I ATCGAT 2 cut(s) 248, 302
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 265, 418
Bse3DI GCAATG 1 cut(s) 535
BseCI ATCGAT 2 cut(s) 248, 302
BseGI GGATG 2 cut(s) 145, 324
BseLI CCNNNNNNNGG 3 cut(s) 136, 265, 418
BseMI GCAATG 1 cut(s) 535
BshVI ATCGAT 2 cut(s) 248, 302
BsiHKAI GWGCWC 2 cut(s) 193, 441
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 3 cut(s) 136, 265, 418
Bsp1286I GDGCHC 2 cut(s) 193, 441
Bsp143I GATC 4 cut(s) 299, 460, 521, 556
BspDI ATCGAT 2 cut(s) 248, 302
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 535
BssMI GATC 4 cut(s) 299, 460, 521, 556
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 127, 207
BstDEI CTNAG 2 cut(s) 162, 429
BstF5I GGATG 2 cut(s) 145, 324
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 302, 463, 524, 559
BstMBI GATC 4 cut(s) 299, 460, 521, 556
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
Bsu15I ATCGAT 2 cut(s) 248, 302
BsuTUI ATCGAT 2 cut(s) 248, 302
BtgZI GCGATG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 145, 324
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 127, 207
CfoI GCGC 1 cut(s) 32
ClaI ATCGAT 2 cut(s) 248, 302
CviAII CATG 1 cut(s) 19
CviJI RGCY 4 cut(s) 205, 386, 424, 439
CviKI_1 RGCY 4 cut(s) 205, 386, 424, 439
DdeI CTNAG 2 cut(s) 162, 429
DpnI GATC 4 cut(s) 301, 462, 523, 558
DpnII GATC 4 cut(s) 299, 460, 521, 556
DraI TTTAAA 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 441
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 44, 89, 110, 389
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 460
FokI GGATG 2 cut(s) 152, 331
FriOI GRGCYC 1 cut(s) 441
GlaI GCGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 2 cut(s) 254, 304
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 436
Hpy188III TCNNGA 6 cut(s) 194, 230, 308, 347, 371, 472
HpyAV CCTTC 5 cut(s) 193, 259, 305, 309, 435
HpyCH4III ACNGT 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 162, 429
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 299, 460, 521, 556
LmnI GCTCC 3 cut(s) 202, 421, 436
LpnPI CCDG 3 cut(s) 18, 37, 105
LweI GCATC 1 cut(s) 278
MalI GATC 4 cut(s) 301, 462, 523, 558
MboI GATC 4 cut(s) 299, 460, 521, 556
MboII GAAGA 5 cut(s) 234, 274, 298, 503, 512
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 2 cut(s) 193, 441
MluCI AATT 3 cut(s) 12, 36, 180
MmeI TCCRAC 2 cut(s) 375, 414
MnlI CCTC 4 cut(s) 17, 169, 343, 367
MseI TTAA 5 cut(s) 6, 185, 221, 506, 548
MspI CCGG 1 cut(s) 92
NdeII GATC 4 cut(s) 299, 460, 521, 556
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 254, 304
PflMI CCANNNNNTGG 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 521
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 5 cut(s) 6, 185, 221, 506, 548
Sau3AI GATC 4 cut(s) 299, 460, 521, 556
SduI GDGCHC 2 cut(s) 193, 441
SetI ASST 5 cut(s) 28, 56, 207, 388, 441
SfaNI GCATC 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 3 cut(s) 12, 36, 180
SstI GAGCTC 1 cut(s) 441
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 5 cut(s) 248, 302, 307, 473, 516
TasI AATT 3 cut(s) 12, 36, 180
TfiI GAWTC 2 cut(s) 254, 304
Tru1I TTAA 5 cut(s) 6, 185, 221, 506, 548
Tru9I TTAA 5 cut(s) 6, 185, 221, 506, 548
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 3 cut(s) 234, 335, 504
TspRI CASTG 1 cut(s) 177
Van91I CCANNNNNTGG 1 cut(s) 136
XapI RAATTY 2 cut(s) 36, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.