Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000166.1

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

277548 .. 278623

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000166.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgctctcgcggctgtctgaactgttcctccgctacgagcatgatccccatgtcaagttggtcattctcaaagctaacggtgtttcaatacacggtagttttcatgtggcaacggagaagacggtgtttgccatgccggaagcagctatcggagggtttcctgatgttggttcctcttatttcctatcaagacttcctggattctttggagagtatcttggtcttacaggtgccagattggacggtcctgaaatgcttgctttgggtctagcaactcacttttttccctcaacgaaattggcttcggtagaagaagccctagtaagaactctcggtgcttttcctaatacaagctcaagtgatgaccatgcttttatttcagccattctagatgcatactctgagcaaccagctctgaaagtgaacagtgcttaccaccgtatggatgttattgacaagtgcttttctcaatccacagtggaagagattttaagccttgaaaaggagtttgctacattaaccaacataagtgatcatgatgaatggttatcttcatcaattcagtcaatgaaaaatgcatcgccatcaagtttgaagattgctttgagatcgattcgagaaggaaggcggctgcaaggagttggtgagtgcattgttcgcgaatataggattatttgtcatgttttgcgtggggaaatcagcaaggatttcatggagggttgtagagctatactgttggacaaggataagaacccaaagtggaagccttctagattagagcttgtcactgacgagatggttggccactacttctctaggttgcatgatgacgaagaattaaagctccctcaaagatccaaattgtctacaactgccatttccaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

296

Amino Acids

33.04

Weight (kDa)

6.13

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	866
AccII	CGCG	2 cut(s)	10, 660
AciI	CCGC	3 cut(s)	10, 31, 628
AclWI	GGATC	2 cut(s)	38, 849
AcoI	YGGCCR	1 cut(s)	802
AfiI	CCNNNNNNNGG	3 cut(s)	167, 442, 502
AgsI	TTSAA	3 cut(s)	87, 500, 595
AjnI	CCWGG	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	7 cut(s)	74, 146, 354, 413, 728, 781, 844
AluI	AGCT	7 cut(s)	74, 146, 354, 413, 728, 781, 844
AlwI	GGATC	2 cut(s)	38, 849
AoxI	GGCC	1 cut(s)	802
ApeKI	GCWGC	2 cut(s)	143, 631
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	155, 618
BccI	CCATC	2 cut(s)	592, 790
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	532
BfaI	CTAG	5 cut(s)	269, 320, 389, 771, 816
BisI	GCNGC	4 cut(s)	11, 144, 629, 632
BlsI	GCNGC	4 cut(s)	12, 145, 630, 633
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	172, 232
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	382, 587
BpiI	GAAGAC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	340
Bsa29I	ATCGAT	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 442, 502
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	611
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	167, 442, 502
BseMII	CTCAG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	155, 618
Bsh1236I	CGCG	2 cut(s)	10, 660
BshFI	GGCC	1 cut(s)	804
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	167, 442, 502
BsnI	GGCC	1 cut(s)	804
Bsp143I	GATC	4 cut(s)	43, 532, 608, 854
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	3 cut(s)	10, 31, 628
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	611
BspFNI	CGCG	2 cut(s)	10, 660
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	172, 232
BspPI	GGATC	2 cut(s)	38, 849
BspT107I	GGYRCC	1 cut(s)	230
BssMI	GATC	4 cut(s)	43, 532, 608, 854
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	9 cut(s)	24, 80, 95, 124, 245, 428, 440, 478, 735
Bst6I	CTCTTC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	2 cut(s)	10, 660
BstKTI	GATC	4 cut(s)	46, 535, 611, 857
BstMBI	GATC	4 cut(s)	43, 532, 608, 854
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 657
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	2 cut(s)	10, 660
BstV1I	GCAGC	2 cut(s)	155, 618
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
Bsu15I	ATCGAT	1 cut(s)	611
BsuRI	GGCC	1 cut(s)	804
BsuTUI	ATCGAT	1 cut(s)	611
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	433, 483, 786
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	611
CviAII	CATG	9 cut(s)	41, 50, 104, 133, 368, 536, 680, 712, 824
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	45, 534, 610, 856
DpnII	GATC	4 cut(s)	43, 532, 608, 854
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	245
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	196
EcoT22I	ATGCAT	2 cut(s)	397, 580
FaeI	CATG	9 cut(s)	44, 53, 107, 136, 371, 539, 683, 715, 827
FatI	CATG	9 cut(s)	40, 49, 103, 132, 367, 535, 679, 711, 823
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	866
Fnu4HI	GCNGC	4 cut(s)	11, 144, 629, 632
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	11, 144, 629, 632
FspBI	CTAG	5 cut(s)	269, 320, 389, 771, 816
GluI	GCNGC	4 cut(s)	11, 144, 629, 632
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	9 cut(s)	44, 53, 107, 136, 371, 539, 683, 715, 827
HinfI	GANTC	2 cut(s)	201, 613
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	2 cut(s)	424, 867
Hpy188I	TCNGA	4 cut(s)	19, 152, 403, 417
Hpy188III	TCNNGA	8 cut(s)	161, 189, 248, 389, 536, 617, 659, 771
Hpy8I	GTNNAC	2 cut(s)	424, 867
HpyAV	CCTTC	3 cut(s)	614, 618, 777
HpyCH4III	ACNGT	9 cut(s)	24, 80, 95, 124, 245, 428, 440, 478, 735
HpyCH4V	TGCA	5 cut(s)	395, 578, 634, 651, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 657
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	9 cut(s)	44, 53, 107, 136, 371, 539, 683, 715, 827
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	43, 532, 608, 854
LmnI	GCTCC	1 cut(s)	849
LpnPI	CCDG	8 cut(s)	150, 174, 183, 210, 213, 247, 261, 423
Lsp1109I	GCAGC	2 cut(s)	155, 618
LweI	GCATC	2 cut(s)	382, 587
MaeI	CTAG	5 cut(s)	269, 320, 389, 771, 816
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	4 cut(s)	45, 534, 610, 856
MboI	GATC	4 cut(s)	43, 532, 608, 854
MboII	GAAGA	6 cut(s)	130, 323, 494, 543, 607, 845
MflI	RGATCY	1 cut(s)	854
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	4 cut(s)	296, 558, 836, 860
MluNI	TGGCCA	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	717
MnlI	CCTC	6 cut(s)	38, 146, 184, 298, 709, 858
Mox20I	TGGCCA	1 cut(s)	804
Mph1103I	ATGCAT	2 cut(s)	397, 580
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	3 cut(s)	491, 518, 839
Msp20I	TGGCCA	1 cut(s)	804
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	2 cut(s)	10, 660
MwoI	GCNNNNNNNGC	2 cut(s)	10, 657
NdeII	GATC	4 cut(s)	43, 532, 608, 854
NlaIII	CATG	9 cut(s)	44, 53, 107, 136, 371, 539, 683, 715, 827
NlaIV	GGNNCC	2 cut(s)	172, 232
NmuCI	GTSAC	1 cut(s)	784
NruI	TCGCGA	1 cut(s)	660
NsiI	ATGCAT	2 cut(s)	397, 580
PagI	TCATGA	1 cut(s)	535
PfeI	GAWTC	2 cut(s)	201, 613
PflMI	CCANNNNNTGG	1 cut(s)	442
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	12, 145, 630, 633
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	172, 232
PspPI	GGNCC	1 cut(s)	245
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PsuI	RGATCY	1 cut(s)	854
RruI	TCGCGA	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	491, 518, 839
SatI	GCNGC	4 cut(s)	11, 144, 629, 632
Sau3AI	GATC	4 cut(s)	43, 532, 608, 854
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	9 cut(s)	76, 148, 232, 356, 415, 730, 783, 821, 846
SfaNI	GCATC	2 cut(s)	382, 587
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	4 cut(s)	296, 558, 836, 860
SsiI	CCGC	3 cut(s)	10, 31, 628
SspMI	CTAG	5 cut(s)	269, 320, 389, 771, 816
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	9 cut(s)	24, 80, 95, 124, 245, 428, 440, 478, 735
TaqI	TCGA	2 cut(s)	611, 616
TasI	AATT	4 cut(s)	296, 558, 836, 860
TauI	GCSGC	2 cut(s)	13, 631
TfiI	GAWTC	2 cut(s)	201, 613
Tru1I	TTAA	3 cut(s)	491, 518, 839
Tru9I	TTAA	3 cut(s)	491, 518, 839
TscAI	CASTG	3 cut(s)	433, 483, 793
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	2 cut(s)	143, 631
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	5 cut(s)	92, 543, 555, 584, 700
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	3 cut(s)	433, 483, 793
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	500
XbaI	TCTAGA	2 cut(s)	388, 770
XmiI	GTMKAC	1 cut(s)	866
XspI	CTAG	5 cut(s)	269, 320, 389, 771, 816
Zsp2I	ATGCAT	2 cut(s)	397, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.