Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

52440678 .. 52441316

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG299100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTCGCTTGTGGTTTAGCAACTCATTTTGTTCCCTCAGCCAAATTGGCCTCATTAGAAGAAGCTCTAGTATCGCAAATTGCTTCAACAAATATATCAAGCGGTGACCTTGCTGATAATATTTCAGCTATTATTAATCAATACTCGATGCAACCAGCTATAAAAGAGAAAAGTGCTTGCTACAAAATGGATGTTATTGATGAGTGCTTTTCTAAGAGATCAGTGGAGGAAATATTAAGTGCTCTTGAGAAGGAGCTTGCTACTATTGGTCTAAATGGTTGTGAATGGTTGTCTTCATCGATTGAATCCCTGAAGAAGGCGTCGCCGATAAGTTTGAAGATTACATTGAGATCGATTCGAGAAGGAAGGATGCAAGGAGTTGGCGAGTGCCTTGTTCGTGAGTACAGAATGGTTTGCCATGTTGTGAGAGGAGAAATCAGCAAGGACTTCAGGGAGGGTTGTAGAGCTATATTGTTGGATAAGGATAAGAACCCGAAATGGGAGCCTTGTAAGTTGGAACTCATCACTGACGAGATGGTTGATCACTACTTCTCGAAGTTGGATGGTGATGAAGAATTGGAAGAGTTAAAGCTCCCTGAAAGATCCAATTTGTATGGTATTGCCATTGCCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

5.18

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 184	1.1e-44	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	597
AcuI	CTGAAG	2 cut(s)	332, 433
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	2 cut(s)	316, 499
AgsI	TTSAA	3 cut(s)	87, 305, 337
AluBI	AGCT	7 cut(s)	65, 128, 158, 256, 467, 592, 634
AluI	AGCT	7 cut(s)	65, 128, 158, 256, 467, 592, 634
Alw21I	GWGCWC	1 cut(s)	244
AlwI	GGATC	1 cut(s)	597
AoxI	GGCC	1 cut(s)	48
AseI	ATTAAT	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	116, 578
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	529, 557
BclI	TGATCA	1 cut(s)	541
BfaI	CTAG	1 cut(s)	68
BglI	GCCNNNNNGGC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	504
BmsI	GCATC	2 cut(s)	138, 360
BpiI	GAAGAC	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	266
Bsa29I	ATCGAT	2 cut(s)	299, 353
BsaHI	GRCGYC	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 499
Bse3DI	GCAATG	1 cut(s)	624
BseCI	ATCGAT	2 cut(s)	299, 353
BseGI	GGATG	3 cut(s)	196, 375, 568
BseLI	CCNNNNNNNGG	2 cut(s)	316, 499
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	2 cut(s)	299, 353
BsiHKAI	GWGCWC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	316, 499
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	218, 350, 541, 602
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	50
BspDI	ATCGAT	2 cut(s)	299, 353
BspLI	GGNNCC	1 cut(s)	504
BspPI	GGATC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	624
BssMI	GATC	4 cut(s)	218, 350, 541, 602
BssNI	GRCGYC	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	576
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	6, 178, 258
BstDEI	CTNAG	2 cut(s)	37, 213
BstEII	GGTNACC	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	196, 375, 568
BstKTI	GATC	4 cut(s)	221, 353, 544, 605
BstMBI	GATC	4 cut(s)	218, 350, 541, 602
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
Bsu15I	ATCGAT	2 cut(s)	299, 353
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	2 cut(s)	299, 353
BtsCI	GGATG	3 cut(s)	196, 375, 568
BtsIMutI	CAGTG	2 cut(s)	228, 525
Cac8I	GCNNGC	3 cut(s)	6, 178, 258
ClaI	ATCGAT	2 cut(s)	299, 353
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	37, 213
DpnI	GATC	4 cut(s)	220, 352, 543, 604
DpnII	GATC	4 cut(s)	218, 350, 541, 602
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco57I	CTGAAG	2 cut(s)	332, 433
Eco91I	GGTNACC	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	104
FaeI	CATG	1 cut(s)	422
FaiI	YATR	5 cut(s)	95, 161, 420, 470, 615
FatI	CATG	1 cut(s)	418
FbaI	TGATCA	1 cut(s)	541
FokI	GGATG	3 cut(s)	203, 382, 575
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	1 cut(s)	309
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	2 cut(s)	305, 355
HphI	GGTGA	2 cut(s)	116, 578
Hpy188III	TCNNGA	4 cut(s)	245, 359, 398, 553
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	244, 310, 356, 360
HpyCH4V	TGCA	2 cut(s)	151, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	37, 213
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	4 cut(s)	218, 350, 541, 602
LmnI	GCTCC	3 cut(s)	253, 502, 597
LpnPI	CCDG	4 cut(s)	168, 323, 436, 609
LweI	GCATC	2 cut(s)	138, 360
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	4 cut(s)	220, 352, 543, 604
MboI	GATC	4 cut(s)	218, 350, 541, 602
MboII	GAAGA	6 cut(s)	71, 285, 325, 349, 584, 593
MflI	RGATCY	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	4 cut(s)	44, 78, 575, 607
MmeI	TCCRAC	3 cut(s)	456, 495, 540
MnlI	CCTC	5 cut(s)	46, 61, 220, 422, 448
MseI	TTAA	4 cut(s)	135, 236, 587, 637
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	4 cut(s)	218, 350, 541, 602
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	305, 355
PshBI	ATTAAT	1 cut(s)	135
PspEI	GGTNACC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	602
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	4 cut(s)	135, 236, 587, 637
Sau3AI	GATC	4 cut(s)	218, 350, 541, 602
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	8 cut(s)	67, 111, 130, 160, 258, 469, 594, 636
SfaNI	GCATC	2 cut(s)	138, 360
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	44, 78, 575, 607
SsiI	CCGC	1 cut(s)	102
SspI	AATATT	2 cut(s)	121, 234
SspMI	CTAG	1 cut(s)	68
TaqI	TCGA	5 cut(s)	146, 299, 353, 358, 554
TasI	AATT	4 cut(s)	44, 78, 575, 607
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	305, 355
Tru1I	TTAA	4 cut(s)	135, 236, 587, 637
Tru9I	TTAA	4 cut(s)	135, 236, 587, 637
TscAI	CASTG	2 cut(s)	228, 532
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	285, 585
TspRI	CASTG	2 cut(s)	228, 532
VspI	ATTAAT	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	314
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.