Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000464

Physical Location & Seq

Genomic Coordinates Reverse (-)

49483204 .. 49484397

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58240

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTTCCTTCATCTCAGATCATCATTACAACGATCCAGAGATACTGGTACGGAAGAATAATCGATCCGTGACAACGTTGACACTCAACAGACCTCGAAAATTAAACGCCCTCTCAGTTTCCATGCTCTCGCAGCTGTCTGAACTGTTCCTCCGCTACGAGCACGATCCCCATGTCAAGTTGGTCATTCTCAAAGCTAACGGTAAGGCATTTTCGCCGGGGGGCGACGTTGCGTCTGTAGCTCATCATCTCTACAATGGCAATTTAAGAGCTGCTTTCAAAAGTTTCGCAACTGCATACACCTTAATATACTTGGTGGCAACAAAGACTACACCCCAGGTTTCATTTCTCAATGGAATGACCATGGGGACCGGGGCAGGTGTTTCAATACACGGTACCTTTCGTGTGGCAACGGAGAAGACGGTGTTTGCCATGCCAGAAGCAGCTATCGGAGGGTTTCCTGATGTTGGTTCCTCTTATTTCCTATCAAGACTTCCTGGATTCTTTGGGGAGTATCTTGGTCTTACAGGTGCCAGATTGGACGGTCCTGAAATGCTTGCTTTGGGTCTAGCAACTCACTTTTTTCCCTCATCGAAATTGGCTTCTGTAGAAGAAGCCCTAGTAAGAACTCTCGGTGCTTTTCCTAATACAAGCTCAAGTGATGACCATGCTTTTATTTCAGCCATTCTAGATGCATACTCTGAGCAACCAGCTCTGAAAGTGAACAGTGCTTTCCACCTTATGGATGTTATTGACAAGTGCTTTTCTCAATCCACAGTGGAAGAGATTTTAAGTAGCCTTGAAAAGGAGTTTGCTACATTAACCAACATAAGTGATCATCATGAATGGTTATCTTCATCAATTCAGTCAATGAAAAATGCATCGCCATTAAGTTTGAAGATTGCTTTGAGATCGATTCGAGAAGGAAGGCGGCTGCAAGGAGTTGGTGAGTGCATTGTTCTTGAATATAGGATTATTTGTCATGTTTTGCGTGGGGAAATCAGCAAGGATTTCATGGAGGGTTGCAGAGCTATACTGTTGGACAAGGATAAGAACCCAAAGTGGAAGCCTTCTAGATTAGAGCTTGTAACTGACGAGATGGTTGGCCACTACTTCTCTAGGTTGCATGATGACGAAGAATTAAAGCTCCCTCAAAGATGCAAATTGTCTGCAACTGCCATTTCCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

397

Amino Acids

43.81

Weight (kDa)

7.26

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	21 - 238	4e-25	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	25 - 372	4.7e-112	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30650 AT2G30650 AT2G30660 AT2G30660 AT5G65940 AT5G65940 AT5G65940 AT5G65940
fragaria_vesca	FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g08010 FvH4_7g09160 FvH4_7g15030 FvH4_7g18470
malus_domestica	MD00G1098500.v1.1 MD02G1229900.v1.1 MD07G1169300.v1.1 MD07G1169400.v1.1
prunus_persica	Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G109100_v2.0.a1 Prupe.2G207200_v2.0.a1 Prupe.2G207400_v2.0.a1 Prupe.2G207600_v2.0.a1 Prupe.2G207700_v2.0.a1 Prupe.2G207800_v2.0.a1
pyrus_communis	pycom02g19850 pycom07g06680 pycom07g16310
rosa_chinensis	RchiOBHm_Chr1g0341301 RchiOBHm_Chr1g0345221 RchiOBHm_Chr1g0357091 RchiOBHm_Chr1g0357121 RchiOBHm_Chr1g0357151
rosa_laevigata	RLG00000027659 RLG00000028049 RLG00000028052 RLG00000029082 RLG00000029626
rosa_multiflora	Rmu_sc0000117.1_g000042 Rmu_sc0000166.1_g000050 Rmu_sc0004092.1_g000048 Rmu_sc0005967.1_g000013 Rmu_sc0006896.1_g000007 Rmu_sc0011699.1_g000007 Rmu_sc0013980.1_g000002 Rmu_sc0021527.1_g000001 Rmu_sc0024834.1_g000001 Rmu_ssc0000009.1_g000009
rosa_roxburghii	Rroxscaffold_4G00294310 Rroxscaffold_4G00299050 Rroxscaffold_4G00311940
rosa_rugosa	Rorug01G0157800.1 Rorug01G0254200 Rorug01G0254300.1 Rorug01G0296600.1 Rorug01G0296800 Rorug01G0296900 Rorug06G0065700
rosa_samantha	Rh1AG129700 Rh1AG162000 Rh1AG172400 Rh1AG268500 Rh1AG268600 Rh1AG305700 Rh1BG140400 Rh1BG236100 Rh1BG236200 Rh1BG269000 Rh1BG269100 Rh1CG123500 Rh1CG151300 Rh1CG160500 Rh1CG252100 Rh1CG252300 Rh1CG286900 Rh1DG172700 Rh1DG263300 Rh1DG263400 Rh1DG299000 Rh1DG299100
rosa_wichuraiana	Rw0G018900 Rw0G022950 Rw1G013330 Rw1G014380 Rw1G023680 Rw1G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	395, 530
AccB7I	CCANNNNNTGG	1 cut(s)	742
AciI	CCGC	2 cut(s)	154, 931
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	3 cut(s)	29, 60, 161
AcoI	YGGCCR	1 cut(s)	1105
AfaI	GTAC	2 cut(s)	51, 397
AfiI	CCNNNNNNNGG	3 cut(s)	467, 742, 805
AgsI	TTSAA	5 cut(s)	280, 387, 803, 898, 965
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	2 cut(s)	336, 496
AloI	GAACNNNNNNTCC	2 cut(s)	135, 167
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	3 cut(s)	29, 60, 161
AoxI	GGCC	1 cut(s)	1105
ApeKI	GCWGC	4 cut(s)	133, 272, 443, 934
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	369, 545
AsuC2I	CCSGG	2 cut(s)	219, 373
AsuHPI	GGTGA	1 cut(s)	959
AvaII	GGWCC	2 cut(s)	369, 545
BalI	TGGCCA	1 cut(s)	1107
BanI	GGYRCC	2 cut(s)	395, 530
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	4 cut(s)	145, 259, 455, 921
BccI	CCATC	1 cut(s)	1093
BciT130I	CCWGG	2 cut(s)	338, 498
BclI	TGATCA	1 cut(s)	835
BcnI	CCSGG	2 cut(s)	219, 373
BfaI	CTAG	5 cut(s)	569, 620, 689, 1074, 1119
BfmI	CTRYAG	2 cut(s)	237, 606
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	5 cut(s)	134, 273, 444, 932, 935
BlsI	GCNGC	5 cut(s)	135, 274, 445, 933, 936
Bme1390I	CCNGG	4 cut(s)	219, 338, 373, 498
Bme18I	GGWCC	2 cut(s)	369, 545
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	369, 545
BmiI	GGNNCC	4 cut(s)	370, 397, 472, 532
BmrFI	CCNGG	4 cut(s)	219, 338, 373, 498
BmsI	GCATC	3 cut(s)	682, 890, 1148
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	2 cut(s)	219, 373
Bsa29I	ATCGAT	2 cut(s)	64, 914
BsaJI	CCNNGG	4 cut(s)	218, 336, 363, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 742, 805
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	338, 498
BseCI	ATCGAT	2 cut(s)	64, 914
BseDI	CCNNGG	4 cut(s)	218, 336, 363, 372
BseGI	GGATG	1 cut(s)	751
BseLI	CCNNNNNNNGG	3 cut(s)	467, 742, 805
BseMII	CTCAG	3 cut(s)	30, 129, 693
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	145, 259, 455, 921
BshFI	GGCC	1 cut(s)	1107
BshNI	GGYRCC	2 cut(s)	395, 530
BshVI	ATCGAT	2 cut(s)	64, 914
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	218, 372
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	467, 742, 805
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	1107
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	2 cut(s)	154, 931
BspANI	GGCC	1 cut(s)	1107
BspCNI	CTCAG	3 cut(s)	29, 128, 694
BspDI	ATCGAT	2 cut(s)	64, 914
BspHI	TCATGA	1 cut(s)	841
BspLI	GGNNCC	4 cut(s)	370, 397, 472, 532
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	3 cut(s)	29, 60, 161
BspT107I	GGYRCC	2 cut(s)	395, 530
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	218, 336, 363, 372
BssMI	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	338, 498
Bst4CI	ACNGT	8 cut(s)	147, 203, 395, 424, 545, 728, 778, 1038
Bst6I	CTCTTC	1 cut(s)	777
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	16, 115, 702
BstDSI	CCRYGG	1 cut(s)	363
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstF5I	GGATG	1 cut(s)	751
BstKTI	GATC	6 cut(s)	22, 37, 68, 169, 838, 914
BstMBI	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 239
BstNI	CCWGG	2 cut(s)	338, 498
BstSCI	CCNGG	4 cut(s)	217, 336, 371, 496
BstSFI	CTRYAG	2 cut(s)	237, 606
BstV1I	GCAGC	4 cut(s)	145, 259, 455, 921
BstV2I	GAAGAC	1 cut(s)	425
Bsu15I	ATCGAT	2 cut(s)	64, 914
BsuRI	GGCC	1 cut(s)	1107
BsuTUI	ATCGAT	2 cut(s)	64, 914
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	867
BtsCI	GGATG	1 cut(s)	751
BtsIMutI	CAGTG	2 cut(s)	733, 783
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	558
CciI	TCATGA	1 cut(s)	841
Cfr13I	GGNCC	2 cut(s)	369, 545
ClaI	ATCGAT	2 cut(s)	64, 914
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	50, 396
CviAII	CATG	9 cut(s)	124, 173, 364, 433, 668, 842, 983, 1015, 1127
CviQI	GTAC	2 cut(s)	50, 396
DdeI	CTNAG	3 cut(s)	16, 115, 702
DpnI	GATC	6 cut(s)	21, 36, 67, 168, 837, 913
DpnII	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	1105
Eam1104I	CTCTTC	1 cut(s)	777
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	369, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoRII	CCWGG	2 cut(s)	336, 496
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	2 cut(s)	697, 883
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	9 cut(s)	127, 176, 367, 436, 671, 845, 986, 1018, 1130
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	9 cut(s)	123, 172, 363, 432, 667, 841, 982, 1014, 1126
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	5 cut(s)	134, 273, 444, 932, 935
FokI	GGATG	1 cut(s)	758
Fsp4HI	GCNGC	5 cut(s)	134, 273, 444, 932, 935
FspBI	CTAG	5 cut(s)	569, 620, 689, 1074, 1119
GluI	GCNGC	5 cut(s)	134, 273, 444, 932, 935
HaeIII	GGCC	1 cut(s)	1107
HapII	CCGG	2 cut(s)	218, 372
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	9 cut(s)	127, 176, 367, 436, 671, 845, 986, 1018, 1130
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	1187
HinfI	GANTC	2 cut(s)	501, 916
HpaII	CCGG	2 cut(s)	218, 372
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	2 cut(s)	81, 724
Hpy188I	TCNGA	5 cut(s)	19, 142, 452, 703, 717
Hpy188III	TCNNGA	9 cut(s)	38, 461, 489, 548, 689, 842, 920, 962, 1074
Hpy8I	GTNNAC	2 cut(s)	81, 724
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	19, 917, 921, 1080
HpyCH4III	ACNGT	8 cut(s)	147, 203, 395, 424, 545, 728, 778, 1038
HpyCH4IV	ACGT	2 cut(s)	77, 228
HpyCH4V	TGCA	9 cut(s)	296, 695, 881, 937, 954, 1026, 1126, 1161, 1172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 239
HpyF3I	CTNAG	3 cut(s)	16, 115, 702
HpySE526I	ACGT	2 cut(s)	77, 228
Hsp92II	CATG	9 cut(s)	127, 176, 367, 436, 671, 845, 986, 1018, 1130
KpnI	GGTACC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
LmnI	GCTCC	1 cut(s)	1152
Lsp1109I	GCAGC	4 cut(s)	145, 259, 455, 921
LweI	GCATC	3 cut(s)	682, 890, 1148
MaeI	CTAG	5 cut(s)	569, 620, 689, 1074, 1119
MaeII	ACGT	2 cut(s)	77, 228
MaeIII	GTNAC	2 cut(s)	70, 1087
MalI	GATC	6 cut(s)	21, 36, 67, 168, 837, 913
MboI	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
MboII	GAAGA	7 cut(s)	67, 430, 623, 794, 846, 910, 1148
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	1107
MluCI	AATT	6 cut(s)	101, 262, 596, 861, 1139, 1163
MluNI	TGGCCA	1 cut(s)	1107
MmeI	TCCRAC	1 cut(s)	1020
MnlI	CCTC	8 cut(s)	105, 122, 161, 446, 484, 598, 1012, 1161
Mox20I	TGGCCA	1 cut(s)	1107
Mph1103I	ATGCAT	2 cut(s)	697, 883
MscI	TGGCCA	1 cut(s)	1107
MseI	TTAA	7 cut(s)	104, 266, 305, 791, 821, 890, 1142
Msp20I	TGGCCA	1 cut(s)	1107
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	2 cut(s)	218, 372
MspR9I	CCNGG	4 cut(s)	219, 338, 373, 498
MvaI	CCWGG	2 cut(s)	338, 498
MwoI	GCNNNNNNNGC	2 cut(s)	133, 239
NciI	CCSGG	2 cut(s)	219, 373
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
NlaIII	CATG	9 cut(s)	127, 176, 367, 436, 671, 845, 986, 1018, 1130
NlaIV	GGNNCC	4 cut(s)	370, 397, 472, 532
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	2 cut(s)	697, 883
PagI	TCATGA	1 cut(s)	841
PaqCI	CACCTGC	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	501, 916
PflMI	CCANNNNNTGG	1 cut(s)	742
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	135, 274, 445, 933, 936
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	336, 496
PspGI	CCWGG	2 cut(s)	336, 496
PspN4I	GGNNCC	4 cut(s)	370, 397, 472, 532
PspPI	GGNCC	2 cut(s)	369, 545
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	51, 397
RsaNI	GTAC	2 cut(s)	50, 396
SaqAI	TTAA	7 cut(s)	104, 266, 305, 791, 821, 890, 1142
SatI	GCNGC	5 cut(s)	134, 273, 444, 932, 935
Sau3AI	GATC	6 cut(s)	19, 34, 65, 166, 835, 911
Sau96I	GGNCC	2 cut(s)	369, 545
ScrFI	CCNGG	4 cut(s)	219, 338, 373, 498
SduI	GDGCHC	1 cut(s)	165
SfaNI	GCATC	3 cut(s)	682, 890, 1148
SfcI	CTRYAG	2 cut(s)	237, 606
SinI	GGWCC	2 cut(s)	369, 545
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	6 cut(s)	101, 262, 596, 861, 1139, 1163
SsiI	CCGC	2 cut(s)	154, 931
SspMI	CTAG	5 cut(s)	569, 620, 689, 1074, 1119
StyD4I	CCNGG	4 cut(s)	217, 336, 371, 496
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	8 cut(s)	147, 203, 395, 424, 545, 728, 778, 1038
TaiI	ACGT	2 cut(s)	80, 231
TaqI	TCGA	5 cut(s)	64, 97, 593, 914, 919
TasI	AATT	6 cut(s)	101, 262, 596, 861, 1139, 1163
TauI	GCSGC	1 cut(s)	934
TfiI	GAWTC	2 cut(s)	501, 916
Tru1I	TTAA	7 cut(s)	104, 266, 305, 791, 821, 890, 1142
Tru9I	TTAA	7 cut(s)	104, 266, 305, 791, 821, 890, 1142
TscAI	CASTG	2 cut(s)	733, 783
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	4 cut(s)	133, 272, 443, 934
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	333, 846, 858, 887, 1003
TspGWI	ACGGA	3 cut(s)	58, 67, 428
TspRI	CASTG	2 cut(s)	733, 783
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	2 cut(s)	369, 545
XagI	CCTNNNNNAGG	1 cut(s)	803
XbaI	TCTAGA	2 cut(s)	688, 1073
XspI	CTAG	5 cut(s)	569, 620, 689, 1074, 1119
Zsp2I	ATGCAT	2 cut(s)	697, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.